Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01586

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01585 and MIT1002_01586 are separated by 14 nucleotidesMIT1002_01586 and MIT1002_01587 are separated by 131 nucleotides MIT1002_01585: MIT1002_01585 - Autoinducer 2 sensor kinase/phosphatase LuxQ, at 1,743,885 to 1,745,888 _01585 MIT1002_01586: MIT1002_01586 - hypothetical protein, at 1,745,903 to 1,747,039 _01586 MIT1002_01587: MIT1002_01587 - Fe(III)-pyochelin receptor, at 1,747,171 to 1,749,606 _01587 Position (kb) 1745 1746 1747 1748Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1744.935 kb on + strand, within MIT1002_01585at 1745.047 kb on + strand, within MIT1002_01585at 1745.047 kb on + strand, within MIT1002_01585at 1745.047 kb on + strand, within MIT1002_01585at 1745.054 kb on + strand, within MIT1002_01585at 1745.054 kb on + strand, within MIT1002_01585at 1745.055 kb on - strand, within MIT1002_01585at 1745.062 kb on - strand, within MIT1002_01585at 1745.062 kb on - strand, within MIT1002_01585at 1745.062 kb on - strand, within MIT1002_01585at 1745.084 kb on + strand, within MIT1002_01585at 1745.108 kb on - strand, within MIT1002_01585at 1745.152 kb on + strand, within MIT1002_01585at 1745.204 kb on - strand, within MIT1002_01585at 1745.208 kb on + strand, within MIT1002_01585at 1745.236 kb on + strand, within MIT1002_01585at 1745.244 kb on - strand, within MIT1002_01585at 1745.308 kb on + strand, within MIT1002_01585at 1745.308 kb on + strand, within MIT1002_01585at 1745.332 kb on + strand, within MIT1002_01585at 1745.339 kb on - strand, within MIT1002_01585at 1745.340 kb on - strand, within MIT1002_01585at 1745.340 kb on - strand, within MIT1002_01585at 1745.485 kb on + strand, within MIT1002_01585at 1745.485 kb on + strand, within MIT1002_01585at 1745.485 kb on + strand, within MIT1002_01585at 1745.485 kb on + strand, within MIT1002_01585at 1745.485 kb on + strand, within MIT1002_01585at 1745.485 kb on + strand, within MIT1002_01585at 1745.485 kb on + strand, within MIT1002_01585at 1745.493 kb on - strand, within MIT1002_01585at 1745.493 kb on - strand, within MIT1002_01585at 1745.493 kb on - strand, within MIT1002_01585at 1745.493 kb on - strand, within MIT1002_01585at 1745.493 kb on - strand, within MIT1002_01585at 1745.493 kb on - strand, within MIT1002_01585at 1745.495 kb on + strand, within MIT1002_01585at 1745.746 kb on - strandat 1745.844 kb on + strandat 1745.844 kb on - strandat 1745.850 kb on - strandat 1745.867 kb on + strandat 1745.891 kb on - strandat 1745.891 kb on - strandat 1745.897 kb on - strandat 1745.913 kb on + strandat 1745.962 kb on - strandat 1745.965 kb on - strandat 1746.030 kb on - strand, within MIT1002_01586at 1746.059 kb on + strand, within MIT1002_01586at 1746.127 kb on + strand, within MIT1002_01586at 1746.127 kb on + strand, within MIT1002_01586at 1746.132 kb on + strand, within MIT1002_01586at 1746.145 kb on + strand, within MIT1002_01586at 1746.290 kb on + strand, within MIT1002_01586at 1746.342 kb on - strand, within MIT1002_01586at 1746.344 kb on + strand, within MIT1002_01586at 1746.414 kb on + strand, within MIT1002_01586at 1746.422 kb on - strand, within MIT1002_01586at 1746.422 kb on - strand, within MIT1002_01586at 1746.426 kb on + strand, within MIT1002_01586at 1746.434 kb on - strand, within MIT1002_01586at 1746.610 kb on - strand, within MIT1002_01586at 1746.673 kb on + strand, within MIT1002_01586at 1746.681 kb on - strand, within MIT1002_01586at 1746.745 kb on - strand, within MIT1002_01586at 1746.758 kb on + strand, within MIT1002_01586at 1746.791 kb on - strand, within MIT1002_01586at 1746.799 kb on - strand, within MIT1002_01586at 1746.965 kb on - strandat 1746.992 kb on - strandat 1747.102 kb on + strandat 1747.104 kb on + strandat 1747.111 kb on - strandat 1747.150 kb on - strandat 1747.219 kb on - strandat 1747.232 kb on + strandat 1747.334 kb on + strandat 1747.385 kb on - strandat 1747.392 kb on + strandat 1747.393 kb on + strandat 1747.398 kb on + strandat 1747.414 kb on - strandat 1747.416 kb on - strand, within MIT1002_01587at 1747.446 kb on - strand, within MIT1002_01587at 1747.521 kb on + strand, within MIT1002_01587at 1747.521 kb on + strand, within MIT1002_01587at 1747.521 kb on + strand, within MIT1002_01587at 1747.521 kb on + strand, within MIT1002_01587at 1747.529 kb on - strand, within MIT1002_01587at 1747.529 kb on - strand, within MIT1002_01587at 1747.529 kb on - strand, within MIT1002_01587at 1747.530 kb on - strand, within MIT1002_01587at 1747.661 kb on - strand, within MIT1002_01587at 1747.729 kb on + strand, within MIT1002_01587at 1747.744 kb on - strand, within MIT1002_01587at 1747.744 kb on - strand, within MIT1002_01587at 1747.793 kb on - strand, within MIT1002_01587at 1747.793 kb on - strand, within MIT1002_01587at 1747.839 kb on + strand, within MIT1002_01587at 1747.847 kb on - strand, within MIT1002_01587at 1747.847 kb on - strand, within MIT1002_01587at 1747.865 kb on + strand, within MIT1002_01587at 1747.879 kb on + strand, within MIT1002_01587at 1747.911 kb on - strand, within MIT1002_01587at 1747.942 kb on + strand, within MIT1002_01587at 1748.026 kb on - strand, within MIT1002_01587

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
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1,744,935 + MIT1002_01585 0.52 -0.9
1,745,047 + MIT1002_01585 0.58 -0.1
1,745,047 + MIT1002_01585 0.58 -0.4
1,745,047 + MIT1002_01585 0.58 -0.1
1,745,054 + MIT1002_01585 0.58 +0.5
1,745,054 + MIT1002_01585 0.58 -1.0
1,745,055 - MIT1002_01585 0.58 +0.7
1,745,062 - MIT1002_01585 0.59 -0.1
1,745,062 - MIT1002_01585 0.59 -1.8
1,745,062 - MIT1002_01585 0.59 -0.7
1,745,084 + MIT1002_01585 0.60 -0.0
1,745,108 - MIT1002_01585 0.61 +1.3
1,745,152 + MIT1002_01585 0.63 -2.5
1,745,204 - MIT1002_01585 0.66 -0.0
1,745,208 + MIT1002_01585 0.66 +0.0
1,745,236 + MIT1002_01585 0.67 -1.9
1,745,244 - MIT1002_01585 0.68 +0.4
1,745,308 + MIT1002_01585 0.71 -0.4
1,745,308 + MIT1002_01585 0.71 +0.1
1,745,332 + MIT1002_01585 0.72 -2.2
1,745,339 - MIT1002_01585 0.73 -2.3
1,745,340 - MIT1002_01585 0.73 +0.3
1,745,340 - MIT1002_01585 0.73 -0.8
1,745,485 + MIT1002_01585 0.80 -2.1
1,745,485 + MIT1002_01585 0.80 -0.6
1,745,485 + MIT1002_01585 0.80 +0.8
1,745,485 + MIT1002_01585 0.80 -2.5
1,745,485 + MIT1002_01585 0.80 +0.0
1,745,485 + MIT1002_01585 0.80 +0.7
1,745,485 + MIT1002_01585 0.80 -1.6
1,745,493 - MIT1002_01585 0.80 +0.7
1,745,493 - MIT1002_01585 0.80 +1.0
1,745,493 - MIT1002_01585 0.80 +0.8
1,745,493 - MIT1002_01585 0.80 -1.2
1,745,493 - MIT1002_01585 0.80 +0.0
1,745,493 - MIT1002_01585 0.80 +0.1
1,745,495 + MIT1002_01585 0.80 +0.4
1,745,746 - -0.0
1,745,844 + -0.2
1,745,844 - -2.6
1,745,850 - +0.0
1,745,867 + -0.5
1,745,891 - -1.0
1,745,891 - -0.0
1,745,897 - +0.7
1,745,913 + -0.2
1,745,962 - -0.0
1,745,965 - +0.6
1,746,030 - MIT1002_01586 0.11 -1.5
1,746,059 + MIT1002_01586 0.14 +0.7
1,746,127 + MIT1002_01586 0.20 -2.2
1,746,127 + MIT1002_01586 0.20 -0.1
1,746,132 + MIT1002_01586 0.20 +0.2
1,746,145 + MIT1002_01586 0.21 +1.9
1,746,290 + MIT1002_01586 0.34 -0.8
1,746,342 - MIT1002_01586 0.39 +0.6
1,746,344 + MIT1002_01586 0.39 -1.0
1,746,414 + MIT1002_01586 0.45 +0.2
1,746,422 - MIT1002_01586 0.46 -1.0
1,746,422 - MIT1002_01586 0.46 -1.0
1,746,426 + MIT1002_01586 0.46 +1.2
1,746,434 - MIT1002_01586 0.47 -0.9
1,746,610 - MIT1002_01586 0.62 -2.8
1,746,673 + MIT1002_01586 0.68 -0.9
1,746,681 - MIT1002_01586 0.68 -0.9
1,746,745 - MIT1002_01586 0.74 -0.3
1,746,758 + MIT1002_01586 0.75 +1.1
1,746,791 - MIT1002_01586 0.78 -0.8
1,746,799 - MIT1002_01586 0.79 +0.9
1,746,965 - +0.7
1,746,992 - -1.3
1,747,102 + -0.4
1,747,104 + -1.7
1,747,111 - +0.1
1,747,150 - +0.4
1,747,219 - +0.6
1,747,232 + +0.8
1,747,334 + -0.9
1,747,385 - -1.6
1,747,392 + +0.6
1,747,393 + -1.7
1,747,398 + -0.2
1,747,414 - -0.1
1,747,416 - MIT1002_01587 0.10 +1.2
1,747,446 - MIT1002_01587 0.11 -0.8
1,747,521 + MIT1002_01587 0.14 +1.1
1,747,521 + MIT1002_01587 0.14 +0.3
1,747,521 + MIT1002_01587 0.14 +0.6
1,747,521 + MIT1002_01587 0.14 +0.3
1,747,529 - MIT1002_01587 0.15 +2.4
1,747,529 - MIT1002_01587 0.15 -3.6
1,747,529 - MIT1002_01587 0.15 +0.8
1,747,530 - MIT1002_01587 0.15 -0.1
1,747,661 - MIT1002_01587 0.20 -0.7
1,747,729 + MIT1002_01587 0.23 -0.7
1,747,744 - MIT1002_01587 0.24 +0.7
1,747,744 - MIT1002_01587 0.24 +0.2
1,747,793 - MIT1002_01587 0.26 -0.6
1,747,793 - MIT1002_01587 0.26 +0.7
1,747,839 + MIT1002_01587 0.27 +0.2
1,747,847 - MIT1002_01587 0.28 +1.0
1,747,847 - MIT1002_01587 0.28 +0.5
1,747,865 + MIT1002_01587 0.28 -0.3
1,747,879 + MIT1002_01587 0.29 -0.2
1,747,911 - MIT1002_01587 0.30 -0.1
1,747,942 + MIT1002_01587 0.32 -1.5
1,748,026 - MIT1002_01587 0.35 +0.5

Or see this region's nucleotide sequence