Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01255

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01254 and MIT1002_01255 overlap by 1 nucleotidesMIT1002_01255 and MIT1002_01256 are separated by 5 nucleotidesMIT1002_01256 and MIT1002_01257 overlap by 1 nucleotides MIT1002_01254: MIT1002_01254 - Nitrogen fixation protein RnfD, at 1,379,781 to 1,380,863 _01254 MIT1002_01255: MIT1002_01255 - Nitrogen fixation protein RnfC, at 1,380,863 to 1,383,754 _01255 MIT1002_01256: MIT1002_01256 - Nitrogen fixation protein rnfB, at 1,383,760 to 1,384,341 _01256 MIT1002_01257: MIT1002_01257 - Electron transport complex protein RnfA, at 1,384,341 to 1,384,922 _01257 Position (kb) 1380 1381 1382 1383 1384Strain fitness (log2 ratio) -2 -1 0 1at 1381.023 kb on - strandat 1381.056 kb on - strandat 1381.313 kb on - strand, within MIT1002_01255at 1381.313 kb on - strand, within MIT1002_01255at 1381.478 kb on - strand, within MIT1002_01255at 1381.668 kb on - strand, within MIT1002_01255at 1381.854 kb on - strand, within MIT1002_01255at 1382.042 kb on - strand, within MIT1002_01255at 1383.796 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
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1,381,023 - +0.2
1,381,056 - +0.5
1,381,313 - MIT1002_01255 0.16 +0.4
1,381,313 - MIT1002_01255 0.16 -0.0
1,381,478 - MIT1002_01255 0.21 +0.9
1,381,668 - MIT1002_01255 0.28 -2.6
1,381,854 - MIT1002_01255 0.34 +0.5
1,382,042 - MIT1002_01255 0.41 +1.1
1,383,796 - -0.5

Or see this region's nucleotide sequence