Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01208

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
1,330,262	+		MIT1002_01206	0.72	-0.3
1,330,275	+		MIT1002_01206	0.73	+0.3
1,330,358	+		MIT1002_01206	0.81	+0.0
1,330,358	+		MIT1002_01206	0.81	+0.9
1,330,366	-		MIT1002_01206	0.82	+0.0
1,330,371	-		MIT1002_01206	0.82	-1.2
1,330,435	+		MIT1002_01206	0.88	+1.3
1,330,445	+		MIT1002_01206	0.89	+1.8
1,330,453	-				+0.2
1,330,461	-				+0.6
1,330,469	-				-0.2
1,330,475	+				-0.1
1,330,481	+				-0.8
1,330,481	+				-0.5
1,330,522	-				+0.9
1,330,558	+				-0.2
1,330,639	-				+1.9
1,330,703	+		MIT1002_01207	0.17	+0.6
1,330,734	-		MIT1002_01207	0.25	-0.3
1,330,960	+		MIT1002_01207	0.84	+0.3
1,330,982	-		MIT1002_01207	0.89	-1.2
1,330,988	+				+1.5
1,331,037	+				-0.0
1,331,141	-				-0.3
1,331,164	+				-2.1
1,331,225	-				-0.7
1,331,298	-				+0.7
1,331,306	-				-0.4
1,331,306	-				+0.3
1,331,327	-				+0.4
1,331,341	+				+0.9
1,331,349	-		MIT1002_01208	0.11	+0.7
1,331,428	+		MIT1002_01208	0.19	+0.1
1,331,428	+		MIT1002_01208	0.19	+0.3
1,331,428	+		MIT1002_01208	0.19	-0.1
1,331,436	-		MIT1002_01208	0.20	+0.2
1,331,451	+		MIT1002_01208	0.22	-1.2
1,331,482	+		MIT1002_01208	0.25	+0.3
1,331,491	+		MIT1002_01208	0.26	+0.3
1,331,491	+		MIT1002_01208	0.26	-0.2
1,331,499	-		MIT1002_01208	0.27	+0.4
1,331,499	-		MIT1002_01208	0.27	-0.3
1,331,541	-		MIT1002_01208	0.32	-0.8
1,331,546	-		MIT1002_01208	0.32	+1.6
1,331,551	-		MIT1002_01208	0.33	+0.4
1,331,556	-		MIT1002_01208	0.33	-0.7
1,331,611	+		MIT1002_01208	0.39	-0.9
1,331,616	+		MIT1002_01208	0.40	+1.7
1,331,617	+		MIT1002_01208	0.40	+1.6
1,331,624	-		MIT1002_01208	0.41	+2.1
1,331,624	-		MIT1002_01208	0.41	+0.6
1,331,625	-		MIT1002_01208	0.41	+0.9
1,331,625	-		MIT1002_01208	0.41	+0.1
1,331,792	-		MIT1002_01208	0.59	+1.6
1,331,893	+		MIT1002_01208	0.70	+0.2
1,331,937	+		MIT1002_01208	0.75	+0.5
1,331,977	+		MIT1002_01208	0.79	+1.2
1,331,987	+		MIT1002_01208	0.80	+1.3
1,332,026	+		MIT1002_01208	0.85	-0.2
1,332,026	+		MIT1002_01208	0.85	+0.1
1,332,034	-		MIT1002_01208	0.86	+0.9
1,332,034	-		MIT1002_01208	0.86	+0.9
1,332,034	-		MIT1002_01208	0.86	+1.9
1,332,034	-		MIT1002_01208	0.86	-0.0
1,332,053	+		MIT1002_01208	0.88	-0.5
1,332,061	-		MIT1002_01208	0.89	-0.2
1,332,184	+				-1.7
1,332,283	+				-1.2
1,332,328	+				-0.6
1,332,336	-				-0.4
1,332,336	-				+0.1
1,332,336	-				-1.1
1,332,375	-		MIT1002_01209	0.12	+0.9
1,332,390	+		MIT1002_01209	0.14	+0.5
1,332,390	+		MIT1002_01209	0.14	+0.3
1,332,398	-		MIT1002_01209	0.15	+0.1
1,332,398	-		MIT1002_01209	0.15	+0.7
1,332,398	-		MIT1002_01209	0.15	-0.2
1,332,398	-		MIT1002_01209	0.15	+0.6
1,332,398	-		MIT1002_01209	0.15	+0.2
1,332,445	+		MIT1002_01209	0.20	-0.9
1,332,473	-		MIT1002_01209	0.23	-1.2
1,332,492	+		MIT1002_01209	0.26	-3.0
1,332,518	-		MIT1002_01209	0.29	+0.9
1,332,518	-		MIT1002_01209	0.29	-0.0
1,332,520	+		MIT1002_01209	0.29	+0.8
1,332,563	-		MIT1002_01209	0.34	+1.0
1,332,563	-		MIT1002_01209	0.34	-0.7
1,332,569	+		MIT1002_01209	0.35	+0.5
1,332,569	+		MIT1002_01209	0.35	+0.1
1,332,569	+		MIT1002_01209	0.35	-0.1
1,332,569	+		MIT1002_01209	0.35	-0.9
1,332,591	-		MIT1002_01209	0.37	-0.0
1,332,602	+		MIT1002_01209	0.38	+0.4
1,332,602	+		MIT1002_01209	0.38	-1.2
1,332,610	-		MIT1002_01209	0.39	+0.5
1,332,750	+		MIT1002_01209	0.56	-1.5
1,332,750	+		MIT1002_01209	0.56	+0.9
1,332,772	-		MIT1002_01209	0.58	+0.6
1,332,853	+		MIT1002_01209	0.68	+0.4
1,332,861	-		MIT1002_01209	0.69	-1.7
1,332,877	-		MIT1002_01209	0.71	+0.5
1,332,899	-		MIT1002_01209	0.73	+0.5
1,332,944	-		MIT1002_01209	0.78	-1.4
1,332,967	+		MIT1002_01209	0.81	-1.6
1,332,967	+		MIT1002_01209	0.81	-0.8
1,332,967	+		MIT1002_01209	0.81	-0.2
1,332,975	-		MIT1002_01209	0.82	-2.0
1,332,982	+		MIT1002_01209	0.83	-0.4
1,332,990	-		MIT1002_01209	0.84	+0.7
1,332,990	-		MIT1002_01209	0.84	-0.6
1,333,094	-				+1.0
1,333,094	-				-0.1
1,333,094	-				-0.6
1,333,106	-				-0.1
1,333,106	-				-0.2