Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00689 and MIT1002_00690 are separated by 317 nucleotides MIT1002_00690 and MIT1002_00691 are separated by 5 nucleotides MIT1002_00691 and MIT1002_00692 are separated by 31 nucleotides
MIT1002_00689: MIT1002_00689 - Ribosomal RNA large subunit methyltransferase G, at 753,305 to 754,537
_00689
MIT1002_00690: MIT1002_00690 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 754,855 to 755,496
_00690
MIT1002_00691: MIT1002_00691 - transcriptional regulator BolA, at 755,502 to 755,822
_00691
MIT1002_00692: MIT1002_00692 - PAP2 superfamily protein, at 755,854 to 756,546
_00692
Position (kb) 754
755
756 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 753.872 kb on - strand, within MIT1002_00689 at 753.893 kb on - strand, within MIT1002_00689 at 753.893 kb on - strand, within MIT1002_00689 at 753.967 kb on - strand, within MIT1002_00689 at 754.096 kb on + strand, within MIT1002_00689 at 754.096 kb on + strand, within MIT1002_00689 at 754.104 kb on - strand, within MIT1002_00689 at 754.104 kb on - strand, within MIT1002_00689 at 754.113 kb on + strand, within MIT1002_00689 at 754.153 kb on + strand, within MIT1002_00689 at 754.172 kb on + strand, within MIT1002_00689 at 754.232 kb on + strand, within MIT1002_00689 at 754.246 kb on - strand, within MIT1002_00689 at 754.420 kb on - strand at 754.421 kb on - strand at 754.443 kb on + strand at 754.443 kb on + strand at 754.443 kb on + strand at 754.448 kb on + strand at 754.638 kb on + strand at 754.638 kb on + strand at 754.646 kb on - strand at 754.674 kb on + strand at 754.679 kb on + strand at 754.895 kb on - strand at 754.950 kb on + strand, within MIT1002_00690 at 754.950 kb on + strand, within MIT1002_00690 at 754.991 kb on - strand, within MIT1002_00690 at 755.001 kb on - strand, within MIT1002_00690 at 755.053 kb on + strand, within MIT1002_00690 at 755.084 kb on + strand, within MIT1002_00690 at 755.091 kb on - strand, within MIT1002_00690 at 755.149 kb on - strand, within MIT1002_00690 at 755.156 kb on + strand, within MIT1002_00690 at 755.186 kb on - strand, within MIT1002_00690 at 755.190 kb on + strand, within MIT1002_00690 at 755.224 kb on + strand, within MIT1002_00690 at 755.224 kb on + strand, within MIT1002_00690 at 755.232 kb on - strand, within MIT1002_00690 at 755.279 kb on + strand, within MIT1002_00690 at 755.295 kb on + strand, within MIT1002_00690 at 755.382 kb on + strand, within MIT1002_00690 at 755.385 kb on - strand, within MIT1002_00690 at 755.428 kb on - strand, within MIT1002_00690 at 755.440 kb on - strand at 755.453 kb on + strand at 755.486 kb on + strand at 755.571 kb on - strand, within MIT1002_00691 at 755.571 kb on - strand, within MIT1002_00691 at 755.640 kb on + strand, within MIT1002_00691 at 755.715 kb on + strand, within MIT1002_00691 at 755.723 kb on - strand, within MIT1002_00691 at 755.730 kb on + strand, within MIT1002_00691 at 755.735 kb on + strand, within MIT1002_00691 at 755.760 kb on + strand, within MIT1002_00691 at 755.768 kb on - strand, within MIT1002_00691 at 755.794 kb on + strand at 755.802 kb on + strand at 755.802 kb on - strand at 755.899 kb on - strand at 755.921 kb on + strand at 755.923 kb on + strand at 755.931 kb on - strand, within MIT1002_00692 at 755.931 kb on - strand, within MIT1002_00692 at 755.931 kb on - strand, within MIT1002_00692 at 755.945 kb on - strand, within MIT1002_00692 at 755.971 kb on + strand, within MIT1002_00692 at 755.979 kb on - strand, within MIT1002_00692 at 756.000 kb on - strand, within MIT1002_00692 at 756.004 kb on + strand, within MIT1002_00692 at 756.076 kb on + strand, within MIT1002_00692 at 756.094 kb on - strand, within MIT1002_00692 at 756.135 kb on - strand, within MIT1002_00692 at 756.136 kb on - strand, within MIT1002_00692 at 756.254 kb on + strand, within MIT1002_00692 at 756.262 kb on - strand, within MIT1002_00692 at 756.274 kb on + strand, within MIT1002_00692 at 756.281 kb on + strand, within MIT1002_00692 at 756.284 kb on + strand, within MIT1002_00692 at 756.289 kb on - strand, within MIT1002_00692 at 756.367 kb on + strand, within MIT1002_00692 at 756.409 kb on + strand, within MIT1002_00692 at 756.409 kb on + strand, within MIT1002_00692
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3 remove 753,872 - MIT1002_00689 0.46 -0.4 753,893 - MIT1002_00689 0.48 -0.1 753,893 - MIT1002_00689 0.48 -0.1 753,967 - MIT1002_00689 0.54 -0.0 754,096 + MIT1002_00689 0.64 +0.1 754,096 + MIT1002_00689 0.64 -3.7 754,104 - MIT1002_00689 0.65 -2.4 754,104 - MIT1002_00689 0.65 -0.2 754,113 + MIT1002_00689 0.66 -2.2 754,153 + MIT1002_00689 0.69 +1.4 754,172 + MIT1002_00689 0.70 -0.4 754,232 + MIT1002_00689 0.75 +0.0 754,246 - MIT1002_00689 0.76 +0.3 754,420 - -0.7 754,421 - +0.4 754,443 + +0.3 754,443 + +0.3 754,443 + -0.7 754,448 + +0.1 754,638 + -0.2 754,638 + +0.3 754,646 - -0.1 754,674 + -2.8 754,679 + -0.1 754,895 - +0.0 754,950 + MIT1002_00690 0.15 +0.3 754,950 + MIT1002_00690 0.15 +0.9 754,991 - MIT1002_00690 0.21 +0.9 755,001 - MIT1002_00690 0.23 +0.2 755,053 + MIT1002_00690 0.31 +0.7 755,084 + MIT1002_00690 0.36 +0.9 755,091 - MIT1002_00690 0.37 +0.0 755,149 - MIT1002_00690 0.46 -0.4 755,156 + MIT1002_00690 0.47 +0.8 755,186 - MIT1002_00690 0.52 +0.4 755,190 + MIT1002_00690 0.52 +0.6 755,224 + MIT1002_00690 0.57 -1.2 755,224 + MIT1002_00690 0.57 +0.0 755,232 - MIT1002_00690 0.59 +0.7 755,279 + MIT1002_00690 0.66 -0.1 755,295 + MIT1002_00690 0.69 +0.4 755,382 + MIT1002_00690 0.82 +0.9 755,385 - MIT1002_00690 0.83 -0.5 755,428 - MIT1002_00690 0.89 -1.5 755,440 - +1.3 755,453 + -0.1 755,486 + +2.0 755,571 - MIT1002_00691 0.21 +0.2 755,571 - MIT1002_00691 0.21 -0.7 755,640 + MIT1002_00691 0.43 -0.2 755,715 + MIT1002_00691 0.66 -2.0 755,723 - MIT1002_00691 0.69 +1.7 755,730 + MIT1002_00691 0.71 +1.5 755,735 + MIT1002_00691 0.73 -0.3 755,760 + MIT1002_00691 0.80 +0.6 755,768 - MIT1002_00691 0.83 -0.3 755,794 + -0.2 755,802 + +1.8 755,802 - -1.9 755,899 - -0.0 755,921 + -0.1 755,923 + -1.2 755,931 - MIT1002_00692 0.11 +0.9 755,931 - MIT1002_00692 0.11 -0.2 755,931 - MIT1002_00692 0.11 +0.6 755,945 - MIT1002_00692 0.13 -1.6 755,971 + MIT1002_00692 0.17 +1.1 755,979 - MIT1002_00692 0.18 -0.0 756,000 - MIT1002_00692 0.21 +0.3 756,004 + MIT1002_00692 0.22 -0.3 756,076 + MIT1002_00692 0.32 -0.2 756,094 - MIT1002_00692 0.35 -0.4 756,135 - MIT1002_00692 0.41 -0.2 756,136 - MIT1002_00692 0.41 +0.3 756,254 + MIT1002_00692 0.58 +0.4 756,262 - MIT1002_00692 0.59 +1.4 756,274 + MIT1002_00692 0.61 -0.3 756,281 + MIT1002_00692 0.62 +0.1 756,284 + MIT1002_00692 0.62 +2.1 756,289 - MIT1002_00692 0.63 +0.3 756,367 + MIT1002_00692 0.74 -0.3 756,409 + MIT1002_00692 0.80 -0.1 756,409 + MIT1002_00692 0.80 +0.1
Or see this region's nucleotide sequence