Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00637 and MIT1002_00638 are separated by 260 nucleotides MIT1002_00638 and MIT1002_00639 overlap by 4 nucleotides
MIT1002_00637: MIT1002_00637 - Bifunctional protein PutA, at 685,561 to 689,358
_00637
MIT1002_00638: MIT1002_00638 - Outer membrane protein OprM precursor, at 689,619 to 691,061
_00638
MIT1002_00639: MIT1002_00639 - putative efflux pump membrane fusion protein, at 691,058 to 692,536
_00639
Position (kb) 689
690
691
692 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 688.642 kb on + strand, within MIT1002_00637 at 688.707 kb on - strand, within MIT1002_00637 at 688.786 kb on - strand, within MIT1002_00637 at 688.798 kb on + strand, within MIT1002_00637 at 688.798 kb on + strand, within MIT1002_00637 at 688.806 kb on + strand, within MIT1002_00637 at 688.806 kb on - strand, within MIT1002_00637 at 688.841 kb on - strand, within MIT1002_00637 at 688.872 kb on - strand, within MIT1002_00637 at 688.907 kb on + strand, within MIT1002_00637 at 688.907 kb on + strand, within MIT1002_00637 at 688.907 kb on + strand, within MIT1002_00637 at 688.942 kb on - strand, within MIT1002_00637 at 688.955 kb on + strand, within MIT1002_00637 at 688.963 kb on - strand, within MIT1002_00637 at 688.986 kb on - strand at 689.006 kb on - strand at 689.020 kb on - strand at 689.025 kb on - strand at 689.118 kb on + strand at 689.118 kb on + strand at 689.151 kb on - strand at 689.174 kb on - strand at 689.190 kb on + strand at 689.198 kb on - strand at 689.203 kb on - strand at 689.322 kb on - strand at 689.425 kb on - strand at 689.443 kb on + strand at 689.443 kb on + strand at 689.448 kb on + strand at 689.451 kb on - strand at 689.451 kb on - strand at 689.451 kb on - strand at 689.473 kb on - strand at 689.521 kb on + strand at 689.521 kb on + strand at 689.521 kb on + strand at 689.521 kb on + strand at 689.521 kb on + strand at 689.521 kb on + strand at 689.529 kb on - strand at 689.529 kb on - strand at 689.529 kb on - strand at 689.529 kb on - strand at 689.529 kb on - strand at 689.529 kb on - strand at 689.569 kb on + strand at 689.592 kb on - strand at 689.626 kb on + strand at 689.634 kb on - strand at 689.647 kb on + strand at 689.647 kb on + strand at 689.647 kb on + strand at 689.647 kb on + strand at 689.647 kb on + strand at 689.655 kb on - strand at 689.655 kb on - strand at 689.655 kb on - strand at 689.655 kb on - strand at 689.655 kb on - strand at 689.655 kb on - strand at 689.677 kb on - strand at 689.683 kb on + strand at 689.697 kb on + strand at 689.705 kb on - strand at 689.727 kb on + strand at 689.747 kb on + strand at 689.747 kb on + strand at 689.755 kb on - strand at 689.802 kb on + strand, within MIT1002_00638 at 689.860 kb on - strand, within MIT1002_00638 at 689.862 kb on + strand, within MIT1002_00638 at 689.888 kb on - strand, within MIT1002_00638 at 689.930 kb on - strand, within MIT1002_00638 at 689.930 kb on - strand, within MIT1002_00638 at 689.959 kb on - strand, within MIT1002_00638 at 689.969 kb on - strand, within MIT1002_00638 at 690.033 kb on + strand, within MIT1002_00638 at 690.043 kb on + strand, within MIT1002_00638 at 690.049 kb on + strand, within MIT1002_00638 at 690.050 kb on + strand, within MIT1002_00638 at 690.051 kb on - strand, within MIT1002_00638 at 690.057 kb on - strand, within MIT1002_00638 at 690.232 kb on + strand, within MIT1002_00638 at 690.290 kb on + strand, within MIT1002_00638 at 690.333 kb on + strand, within MIT1002_00638 at 690.360 kb on + strand, within MIT1002_00638 at 690.408 kb on + strand, within MIT1002_00638 at 690.414 kb on + strand, within MIT1002_00638 at 690.414 kb on + strand, within MIT1002_00638 at 690.414 kb on + strand, within MIT1002_00638 at 690.500 kb on - strand, within MIT1002_00638 at 690.609 kb on - strand, within MIT1002_00638 at 690.625 kb on + strand, within MIT1002_00638 at 690.635 kb on + strand, within MIT1002_00638 at 690.635 kb on + strand, within MIT1002_00638 at 690.642 kb on - strand, within MIT1002_00638 at 690.716 kb on + strand, within MIT1002_00638 at 690.759 kb on - strand, within MIT1002_00638 at 690.832 kb on + strand, within MIT1002_00638 at 690.860 kb on - strand, within MIT1002_00638 at 690.963 kb on + strand at 690.963 kb on + strand at 690.985 kb on - strand at 690.995 kb on - strand at 691.000 kb on + strand at 691.032 kb on - strand at 691.036 kb on + strand at 691.036 kb on + strand at 691.042 kb on + strand at 691.050 kb on - strand at 691.050 kb on - strand at 691.052 kb on + strand at 691.071 kb on + strand at 691.132 kb on + strand at 691.268 kb on + strand, within MIT1002_00639 at 691.268 kb on + strand, within MIT1002_00639 at 691.276 kb on - strand, within MIT1002_00639 at 691.289 kb on + strand, within MIT1002_00639 at 691.356 kb on - strand, within MIT1002_00639 at 691.430 kb on - strand, within MIT1002_00639 at 691.437 kb on - strand, within MIT1002_00639 at 691.491 kb on - strand, within MIT1002_00639 at 691.491 kb on - strand, within MIT1002_00639 at 691.491 kb on - strand, within MIT1002_00639 at 691.491 kb on - strand, within MIT1002_00639 at 691.560 kb on + strand, within MIT1002_00639 at 691.560 kb on + strand, within MIT1002_00639 at 691.560 kb on + strand, within MIT1002_00639 at 691.594 kb on - strand, within MIT1002_00639 at 691.604 kb on - strand, within MIT1002_00639 at 691.619 kb on + strand, within MIT1002_00639 at 691.661 kb on - strand, within MIT1002_00639 at 691.680 kb on + strand, within MIT1002_00639 at 691.687 kb on - strand, within MIT1002_00639 at 691.688 kb on - strand, within MIT1002_00639 at 691.688 kb on - strand, within MIT1002_00639 at 691.695 kb on - strand, within MIT1002_00639 at 691.733 kb on - strand, within MIT1002_00639 at 691.740 kb on - strand, within MIT1002_00639 at 691.750 kb on - strand, within MIT1002_00639 at 691.760 kb on - strand, within MIT1002_00639 at 691.769 kb on - strand, within MIT1002_00639 at 691.830 kb on + strand, within MIT1002_00639 at 691.835 kb on + strand, within MIT1002_00639 at 691.907 kb on - strand, within MIT1002_00639 at 691.942 kb on - strand, within MIT1002_00639 at 691.948 kb on - strand, within MIT1002_00639 at 691.960 kb on - strand, within MIT1002_00639 at 691.960 kb on - strand, within MIT1002_00639 at 691.976 kb on + strand, within MIT1002_00639
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3 remove 688,642 + MIT1002_00637 0.81 -0.1 688,707 - MIT1002_00637 0.83 -0.5 688,786 - MIT1002_00637 0.85 +0.1 688,798 + MIT1002_00637 0.85 -0.1 688,798 + MIT1002_00637 0.85 +0.9 688,806 + MIT1002_00637 0.85 -0.8 688,806 - MIT1002_00637 0.85 -1.0 688,841 - MIT1002_00637 0.86 -0.5 688,872 - MIT1002_00637 0.87 -0.0 688,907 + MIT1002_00637 0.88 -0.1 688,907 + MIT1002_00637 0.88 -0.1 688,907 + MIT1002_00637 0.88 +1.8 688,942 - MIT1002_00637 0.89 -2.0 688,955 + MIT1002_00637 0.89 -0.5 688,963 - MIT1002_00637 0.90 +0.3 688,986 - -2.7 689,006 - -0.1 689,020 - -0.4 689,025 - +0.7 689,118 + +1.6 689,118 + -0.5 689,151 - -0.8 689,174 - -0.2 689,190 + -1.0 689,198 - -2.2 689,203 - -0.1 689,322 - +0.8 689,425 - +0.7 689,443 + -2.6 689,443 + -0.1 689,448 + +0.7 689,451 - -0.1 689,451 - +0.7 689,451 - -0.2 689,473 - -1.2 689,521 + +0.1 689,521 + +0.4 689,521 + +0.8 689,521 + +0.3 689,521 + +1.7 689,521 + -0.4 689,529 - -4.1 689,529 - +0.0 689,529 - +1.6 689,529 - -0.2 689,529 - +0.7 689,529 - -0.5 689,569 + +0.3 689,592 - +0.1 689,626 + +0.0 689,634 - -0.1 689,647 + -0.4 689,647 + -0.4 689,647 + +0.6 689,647 + +0.7 689,647 + -0.4 689,655 - -0.5 689,655 - +0.1 689,655 - +0.6 689,655 - +0.2 689,655 - +0.9 689,655 - -1.4 689,677 - -0.7 689,683 + +0.1 689,697 + +0.8 689,705 - +1.5 689,727 + -1.9 689,747 + -0.3 689,747 + -0.4 689,755 - +0.3 689,802 + MIT1002_00638 0.13 +0.3 689,860 - MIT1002_00638 0.17 +1.4 689,862 + MIT1002_00638 0.17 -1.0 689,888 - MIT1002_00638 0.19 +0.8 689,930 - MIT1002_00638 0.22 +0.4 689,930 - MIT1002_00638 0.22 +2.3 689,959 - MIT1002_00638 0.24 -0.2 689,969 - MIT1002_00638 0.24 -0.3 690,033 + MIT1002_00638 0.29 -0.4 690,043 + MIT1002_00638 0.29 -0.0 690,049 + MIT1002_00638 0.30 +0.1 690,050 + MIT1002_00638 0.30 -0.1 690,051 - MIT1002_00638 0.30 -0.1 690,057 - MIT1002_00638 0.30 -2.0 690,232 + MIT1002_00638 0.42 -2.4 690,290 + MIT1002_00638 0.47 +0.2 690,333 + MIT1002_00638 0.49 -0.9 690,360 + MIT1002_00638 0.51 +0.1 690,408 + MIT1002_00638 0.55 +0.4 690,414 + MIT1002_00638 0.55 -0.8 690,414 + MIT1002_00638 0.55 -0.3 690,414 + MIT1002_00638 0.55 -0.6 690,500 - MIT1002_00638 0.61 +1.2 690,609 - MIT1002_00638 0.69 +1.4 690,625 + MIT1002_00638 0.70 -0.4 690,635 + MIT1002_00638 0.70 -1.4 690,635 + MIT1002_00638 0.70 +1.0 690,642 - MIT1002_00638 0.71 +0.1 690,716 + MIT1002_00638 0.76 +0.7 690,759 - MIT1002_00638 0.79 +0.0 690,832 + MIT1002_00638 0.84 -1.3 690,860 - MIT1002_00638 0.86 -0.5 690,963 + -1.4 690,963 + +0.8 690,985 - -0.3 690,995 - +1.6 691,000 + +1.1 691,032 - +0.1 691,036 + -1.0 691,036 + -0.4 691,042 + -2.8 691,050 - -0.0 691,050 - -0.0 691,052 + -0.5 691,071 + +0.8 691,132 + -1.2 691,268 + MIT1002_00639 0.14 +0.1 691,268 + MIT1002_00639 0.14 -0.1 691,276 - MIT1002_00639 0.15 -0.4 691,289 + MIT1002_00639 0.16 -1.7 691,356 - MIT1002_00639 0.20 +1.0 691,430 - MIT1002_00639 0.25 +0.1 691,437 - MIT1002_00639 0.26 -0.4 691,491 - MIT1002_00639 0.29 +0.5 691,491 - MIT1002_00639 0.29 +1.3 691,491 - MIT1002_00639 0.29 +0.7 691,491 - MIT1002_00639 0.29 +0.4 691,560 + MIT1002_00639 0.34 +0.7 691,560 + MIT1002_00639 0.34 -1.4 691,560 + MIT1002_00639 0.34 +1.6 691,594 - MIT1002_00639 0.36 -0.1 691,604 - MIT1002_00639 0.37 -0.4 691,619 + MIT1002_00639 0.38 -2.1 691,661 - MIT1002_00639 0.41 +0.9 691,680 + MIT1002_00639 0.42 +0.1 691,687 - MIT1002_00639 0.43 -0.6 691,688 - MIT1002_00639 0.43 +0.3 691,688 - MIT1002_00639 0.43 -1.2 691,695 - MIT1002_00639 0.43 +0.5 691,733 - MIT1002_00639 0.46 -1.4 691,740 - MIT1002_00639 0.46 -1.3 691,750 - MIT1002_00639 0.47 +1.7 691,760 - MIT1002_00639 0.47 -0.1 691,769 - MIT1002_00639 0.48 +1.4 691,830 + MIT1002_00639 0.52 +1.3 691,835 + MIT1002_00639 0.53 -0.4 691,907 - MIT1002_00639 0.57 -3.0 691,942 - MIT1002_00639 0.60 -0.1 691,948 - MIT1002_00639 0.60 -0.2 691,960 - MIT1002_00639 0.61 -0.0 691,960 - MIT1002_00639 0.61 +0.0 691,976 + MIT1002_00639 0.62 -0.1
Or see this region's nucleotide sequence