Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00361

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00360 and MIT1002_00361 are separated by 211 nucleotidesMIT1002_00361 and MIT1002_00362 are separated by 64 nucleotides MIT1002_00360: MIT1002_00360 - trans-aconitate 2-methyltransferase, at 388,324 to 389,388 _00360 MIT1002_00361: MIT1002_00361 - hypothetical protein, at 389,600 to 389,923 _00361 MIT1002_00362: MIT1002_00362 - Xylose isomerase-like TIM barrel, at 389,988 to 390,941 _00362 Position (kb) 389 390Strain fitness (log2 ratio) -2 -1 0 1 2at 388.959 kb on - strand, within MIT1002_00360at 389.299 kb on - strandat 389.501 kb on + strandat 389.511 kb on + strandat 389.656 kb on + strand, within MIT1002_00361at 389.657 kb on + strand, within MIT1002_00361at 389.659 kb on - strand, within MIT1002_00361at 389.672 kb on - strand, within MIT1002_00361at 389.717 kb on + strand, within MIT1002_00361at 389.745 kb on + strand, within MIT1002_00361at 389.747 kb on + strand, within MIT1002_00361at 389.828 kb on + strand, within MIT1002_00361at 389.829 kb on + strand, within MIT1002_00361at 389.829 kb on + strand, within MIT1002_00361at 389.836 kb on + strand, within MIT1002_00361at 389.884 kb on + strand, within MIT1002_00361at 389.884 kb on + strand, within MIT1002_00361at 389.892 kb on - strandat 389.892 kb on - strandat 389.960 kb on + strandat 389.977 kb on + strandat 389.985 kb on - strandat 389.985 kb on - strandat 390.019 kb on + strandat 390.027 kb on - strandat 390.133 kb on - strand, within MIT1002_00362at 390.200 kb on + strand, within MIT1002_00362at 390.212 kb on + strand, within MIT1002_00362at 390.220 kb on - strand, within MIT1002_00362at 390.255 kb on + strand, within MIT1002_00362at 390.289 kb on - strand, within MIT1002_00362at 390.304 kb on - strand, within MIT1002_00362at 390.317 kb on - strand, within MIT1002_00362at 390.317 kb on - strand, within MIT1002_00362at 390.368 kb on + strand, within MIT1002_00362at 390.376 kb on - strand, within MIT1002_00362at 390.376 kb on - strand, within MIT1002_00362at 390.376 kb on - strand, within MIT1002_00362at 390.376 kb on - strand, within MIT1002_00362at 390.376 kb on - strand, within MIT1002_00362at 390.376 kb on - strand, within MIT1002_00362at 390.377 kb on - strand, within MIT1002_00362at 390.398 kb on - strand, within MIT1002_00362at 390.403 kb on + strand, within MIT1002_00362at 390.423 kb on + strand, within MIT1002_00362at 390.424 kb on + strand, within MIT1002_00362at 390.455 kb on + strand, within MIT1002_00362at 390.486 kb on + strand, within MIT1002_00362at 390.525 kb on - strand, within MIT1002_00362at 390.525 kb on - strand, within MIT1002_00362at 390.535 kb on - strand, within MIT1002_00362at 390.535 kb on - strand, within MIT1002_00362at 390.535 kb on - strand, within MIT1002_00362at 390.617 kb on + strand, within MIT1002_00362at 390.617 kb on + strand, within MIT1002_00362at 390.617 kb on + strand, within MIT1002_00362at 390.625 kb on - strand, within MIT1002_00362at 390.625 kb on - strand, within MIT1002_00362at 390.651 kb on + strand, within MIT1002_00362at 390.668 kb on + strand, within MIT1002_00362at 390.704 kb on + strand, within MIT1002_00362at 390.712 kb on + strand, within MIT1002_00362at 390.720 kb on - strand, within MIT1002_00362at 390.735 kb on + strand, within MIT1002_00362at 390.756 kb on - strand, within MIT1002_00362at 390.788 kb on - strand, within MIT1002_00362at 390.883 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
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388,959 - MIT1002_00360 0.60 -1.8
389,299 - +0.6
389,501 + +0.3
389,511 + +1.1
389,656 + MIT1002_00361 0.17 -0.3
389,657 + MIT1002_00361 0.18 +0.7
389,659 - MIT1002_00361 0.18 +1.1
389,672 - MIT1002_00361 0.22 -0.2
389,717 + MIT1002_00361 0.36 +0.7
389,745 + MIT1002_00361 0.45 +0.4
389,747 + MIT1002_00361 0.45 -0.7
389,828 + MIT1002_00361 0.70 +0.1
389,829 + MIT1002_00361 0.71 +1.0
389,829 + MIT1002_00361 0.71 -0.4
389,836 + MIT1002_00361 0.73 +2.3
389,884 + MIT1002_00361 0.88 +1.2
389,884 + MIT1002_00361 0.88 +0.8
389,892 - +0.2
389,892 - -1.1
389,960 + -0.8
389,977 + +1.0
389,985 - -1.1
389,985 - +0.2
390,019 + -0.1
390,027 - -0.8
390,133 - MIT1002_00362 0.15 -0.1
390,200 + MIT1002_00362 0.22 -0.3
390,212 + MIT1002_00362 0.23 -0.3
390,220 - MIT1002_00362 0.24 +0.2
390,255 + MIT1002_00362 0.28 -0.4
390,289 - MIT1002_00362 0.32 -0.2
390,304 - MIT1002_00362 0.33 -0.0
390,317 - MIT1002_00362 0.34 +0.6
390,317 - MIT1002_00362 0.34 +0.5
390,368 + MIT1002_00362 0.40 -2.1
390,376 - MIT1002_00362 0.41 -0.2
390,376 - MIT1002_00362 0.41 +0.8
390,376 - MIT1002_00362 0.41 +0.0
390,376 - MIT1002_00362 0.41 -0.7
390,376 - MIT1002_00362 0.41 +0.2
390,376 - MIT1002_00362 0.41 -0.7
390,377 - MIT1002_00362 0.41 +0.6
390,398 - MIT1002_00362 0.43 -0.7
390,403 + MIT1002_00362 0.44 +0.4
390,423 + MIT1002_00362 0.46 +0.0
390,424 + MIT1002_00362 0.46 +0.0
390,455 + MIT1002_00362 0.49 -0.1
390,486 + MIT1002_00362 0.52 +0.6
390,525 - MIT1002_00362 0.56 -0.2
390,525 - MIT1002_00362 0.56 +0.3
390,535 - MIT1002_00362 0.57 -0.1
390,535 - MIT1002_00362 0.57 +1.2
390,535 - MIT1002_00362 0.57 +1.4
390,617 + MIT1002_00362 0.66 -1.7
390,617 + MIT1002_00362 0.66 -0.8
390,617 + MIT1002_00362 0.66 +0.5
390,625 - MIT1002_00362 0.67 +0.0
390,625 - MIT1002_00362 0.67 -1.6
390,651 + MIT1002_00362 0.69 +0.8
390,668 + MIT1002_00362 0.71 -1.1
390,704 + MIT1002_00362 0.75 -0.8
390,712 + MIT1002_00362 0.76 +0.3
390,720 - MIT1002_00362 0.77 -0.5
390,735 + MIT1002_00362 0.78 -0.8
390,756 - MIT1002_00362 0.81 +0.7
390,788 - MIT1002_00362 0.84 +0.3
390,883 + -0.9

Or see this region's nucleotide sequence