Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00192

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00191 and MIT1002_00192 are separated by 209 nucleotidesMIT1002_00192 and MIT1002_00193 are separated by 179 nucleotides MIT1002_00191: MIT1002_00191 - Helix-destabilizing protein, at 209,024 to 209,650 _00191 MIT1002_00192: MIT1002_00192 - hypothetical protein, at 209,860 to 210,813 _00192 MIT1002_00193: MIT1002_00193 - putative dienelactone hydrolase, at 210,993 to 212,279 _00193 Position (kb) 209 210 211Strain fitness (log2 ratio) -2 -1 0 1 2 3at 208.886 kb on - strandat 208.886 kb on - strandat 208.886 kb on - strandat 208.886 kb on - strandat 209.869 kb on + strandat 209.977 kb on + strand, within MIT1002_00192at 210.013 kb on - strand, within MIT1002_00192at 210.040 kb on - strand, within MIT1002_00192at 210.040 kb on - strand, within MIT1002_00192at 210.040 kb on - strand, within MIT1002_00192at 210.040 kb on - strand, within MIT1002_00192at 210.051 kb on + strand, within MIT1002_00192at 210.063 kb on + strand, within MIT1002_00192at 210.068 kb on + strand, within MIT1002_00192at 210.071 kb on - strand, within MIT1002_00192at 210.071 kb on - strand, within MIT1002_00192at 210.076 kb on - strand, within MIT1002_00192at 210.136 kb on - strand, within MIT1002_00192at 210.202 kb on + strand, within MIT1002_00192at 210.306 kb on + strand, within MIT1002_00192at 210.306 kb on + strand, within MIT1002_00192at 210.306 kb on + strand, within MIT1002_00192at 210.314 kb on - strand, within MIT1002_00192at 210.314 kb on - strand, within MIT1002_00192at 210.314 kb on - strand, within MIT1002_00192at 210.379 kb on + strand, within MIT1002_00192at 210.379 kb on - strand, within MIT1002_00192at 210.465 kb on - strand, within MIT1002_00192at 210.477 kb on - strand, within MIT1002_00192at 210.485 kb on + strand, within MIT1002_00192at 210.485 kb on + strand, within MIT1002_00192at 210.524 kb on + strand, within MIT1002_00192at 210.524 kb on + strand, within MIT1002_00192at 210.532 kb on - strand, within MIT1002_00192at 210.635 kb on + strand, within MIT1002_00192at 210.656 kb on + strand, within MIT1002_00192at 210.660 kb on - strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.678 kb on - strand, within MIT1002_00192at 210.678 kb on - strand, within MIT1002_00192at 210.678 kb on - strand, within MIT1002_00192at 210.678 kb on - strand, within MIT1002_00192at 210.678 kb on - strand, within MIT1002_00192at 210.678 kb on - strand, within MIT1002_00192at 210.678 kb on - strand, within MIT1002_00192at 210.701 kb on - strand, within MIT1002_00192at 210.722 kb on + strandat 210.756 kb on - strandat 210.795 kb on - strandat 211.021 kb on + strandat 211.034 kb on - strandat 211.034 kb on - strandat 211.039 kb on - strandat 211.052 kb on + strandat 211.163 kb on + strand, within MIT1002_00193at 211.259 kb on - strand, within MIT1002_00193at 211.293 kb on - strand, within MIT1002_00193at 211.293 kb on - strand, within MIT1002_00193at 211.295 kb on - strand, within MIT1002_00193at 211.310 kb on - strand, within MIT1002_00193at 211.319 kb on - strand, within MIT1002_00193at 211.336 kb on - strand, within MIT1002_00193at 211.384 kb on - strand, within MIT1002_00193at 211.421 kb on - strand, within MIT1002_00193at 211.433 kb on + strand, within MIT1002_00193at 211.435 kb on + strand, within MIT1002_00193at 211.435 kb on + strand, within MIT1002_00193at 211.548 kb on + strand, within MIT1002_00193at 211.590 kb on - strand, within MIT1002_00193at 211.592 kb on + strand, within MIT1002_00193at 211.657 kb on + strand, within MIT1002_00193at 211.749 kb on + strand, within MIT1002_00193at 211.749 kb on + strand, within MIT1002_00193at 211.757 kb on - strand, within MIT1002_00193at 211.762 kb on - strand, within MIT1002_00193at 211.780 kb on - strand, within MIT1002_00193at 211.795 kb on - strand, within MIT1002_00193

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
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208,886 - -1.4
208,886 - -1.4
208,886 - +2.8
208,886 - -1.4
209,869 + -0.9
209,977 + MIT1002_00192 0.12 -1.4
210,013 - MIT1002_00192 0.16 -0.3
210,040 - MIT1002_00192 0.19 +0.1
210,040 - MIT1002_00192 0.19 +1.5
210,040 - MIT1002_00192 0.19 -2.0
210,040 - MIT1002_00192 0.19 +0.2
210,051 + MIT1002_00192 0.20 -0.2
210,063 + MIT1002_00192 0.21 -0.4
210,068 + MIT1002_00192 0.22 +0.5
210,071 - MIT1002_00192 0.22 +0.8
210,071 - MIT1002_00192 0.22 -0.3
210,076 - MIT1002_00192 0.23 -0.1
210,136 - MIT1002_00192 0.29 -1.1
210,202 + MIT1002_00192 0.36 +0.3
210,306 + MIT1002_00192 0.47 -0.2
210,306 + MIT1002_00192 0.47 +0.5
210,306 + MIT1002_00192 0.47 +0.5
210,314 - MIT1002_00192 0.48 -1.6
210,314 - MIT1002_00192 0.48 +0.8
210,314 - MIT1002_00192 0.48 +0.7
210,379 + MIT1002_00192 0.54 -1.3
210,379 - MIT1002_00192 0.54 +0.8
210,465 - MIT1002_00192 0.63 -0.1
210,477 - MIT1002_00192 0.65 -0.4
210,485 + MIT1002_00192 0.66 +2.0
210,485 + MIT1002_00192 0.66 -1.0
210,524 + MIT1002_00192 0.70 -0.8
210,524 + MIT1002_00192 0.70 -0.2
210,532 - MIT1002_00192 0.70 -1.3
210,635 + MIT1002_00192 0.81 -0.0
210,656 + MIT1002_00192 0.83 +0.2
210,660 - MIT1002_00192 0.84 -0.5
210,670 + MIT1002_00192 0.85 +0.3
210,670 + MIT1002_00192 0.85 -1.0
210,670 + MIT1002_00192 0.85 -0.3
210,670 + MIT1002_00192 0.85 -0.2
210,670 + MIT1002_00192 0.85 -1.6
210,670 + MIT1002_00192 0.85 -0.7
210,670 + MIT1002_00192 0.85 -0.7
210,670 + MIT1002_00192 0.85 +0.5
210,670 + MIT1002_00192 0.85 +0.2
210,678 - MIT1002_00192 0.86 -0.3
210,678 - MIT1002_00192 0.86 +0.8
210,678 - MIT1002_00192 0.86 +0.0
210,678 - MIT1002_00192 0.86 +0.5
210,678 - MIT1002_00192 0.86 -1.2
210,678 - MIT1002_00192 0.86 -0.8
210,678 - MIT1002_00192 0.86 -0.6
210,701 - MIT1002_00192 0.88 -0.6
210,722 + -0.8
210,756 - -1.1
210,795 - +1.0
211,021 + -0.4
211,034 - +0.2
211,034 - -0.6
211,039 - -0.4
211,052 + -0.0
211,163 + MIT1002_00193 0.13 +0.1
211,259 - MIT1002_00193 0.21 +0.2
211,293 - MIT1002_00193 0.23 +0.1
211,293 - MIT1002_00193 0.23 -0.4
211,295 - MIT1002_00193 0.23 -0.4
211,310 - MIT1002_00193 0.25 +0.3
211,319 - MIT1002_00193 0.25 +1.5
211,336 - MIT1002_00193 0.27 -0.3
211,384 - MIT1002_00193 0.30 +1.5
211,421 - MIT1002_00193 0.33 -0.8
211,433 + MIT1002_00193 0.34 +0.2
211,435 + MIT1002_00193 0.34 -0.8
211,435 + MIT1002_00193 0.34 +1.5
211,548 + MIT1002_00193 0.43 +0.8
211,590 - MIT1002_00193 0.46 +0.5
211,592 + MIT1002_00193 0.47 -0.8
211,657 + MIT1002_00193 0.52 -0.9
211,749 + MIT1002_00193 0.59 -0.5
211,749 + MIT1002_00193 0.59 +0.7
211,757 - MIT1002_00193 0.59 +0.0
211,762 - MIT1002_00193 0.60 +0.2
211,780 - MIT1002_00193 0.61 -0.4
211,795 - MIT1002_00193 0.62 +0.6

Or see this region's nucleotide sequence