Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00083

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00082 and MIT1002_00083 are separated by 278 nucleotidesMIT1002_00083 and MIT1002_00084 are separated by 280 nucleotides MIT1002_00082: MIT1002_00082 - hypothetical protein, at 87,384 to 88,580 _00082 MIT1002_00083: MIT1002_00083 - putative methyltransferase, at 88,859 to 89,431 _00083 MIT1002_00084: MIT1002_00084 - Ferripyoverdine receptor precursor, at 89,712 to 91,805 _00084 Position (kb) 88 89 90Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 87.861 kb on + strand, within MIT1002_00082at 87.861 kb on + strand, within MIT1002_00082at 87.866 kb on - strand, within MIT1002_00082at 87.868 kb on + strand, within MIT1002_00082at 87.928 kb on + strand, within MIT1002_00082at 87.955 kb on - strand, within MIT1002_00082at 87.994 kb on - strand, within MIT1002_00082at 88.060 kb on + strand, within MIT1002_00082at 88.060 kb on + strand, within MIT1002_00082at 88.085 kb on - strand, within MIT1002_00082at 88.108 kb on - strand, within MIT1002_00082at 88.144 kb on + strand, within MIT1002_00082at 88.152 kb on - strand, within MIT1002_00082at 88.195 kb on - strand, within MIT1002_00082at 88.274 kb on + strand, within MIT1002_00082at 88.274 kb on + strand, within MIT1002_00082at 88.274 kb on + strand, within MIT1002_00082at 88.282 kb on - strand, within MIT1002_00082at 88.290 kb on - strand, within MIT1002_00082at 88.412 kb on - strand, within MIT1002_00082at 88.464 kb on - strandat 88.491 kb on + strandat 88.569 kb on + strandat 88.577 kb on - strandat 88.602 kb on + strandat 88.646 kb on + strandat 88.651 kb on + strandat 88.651 kb on + strandat 88.651 kb on + strandat 88.651 kb on + strandat 88.652 kb on + strandat 88.659 kb on - strandat 88.659 kb on - strandat 88.659 kb on - strandat 88.659 kb on - strandat 88.659 kb on - strandat 88.690 kb on - strandat 88.701 kb on + strandat 88.701 kb on + strandat 88.709 kb on - strandat 88.879 kb on + strandat 88.889 kb on + strandat 88.922 kb on + strand, within MIT1002_00083at 88.955 kb on - strand, within MIT1002_00083at 88.955 kb on - strand, within MIT1002_00083at 89.014 kb on + strand, within MIT1002_00083at 89.022 kb on - strand, within MIT1002_00083at 89.037 kb on - strand, within MIT1002_00083at 89.088 kb on + strand, within MIT1002_00083at 89.115 kb on + strand, within MIT1002_00083at 89.125 kb on + strand, within MIT1002_00083at 89.205 kb on - strand, within MIT1002_00083at 89.249 kb on - strand, within MIT1002_00083at 89.249 kb on - strand, within MIT1002_00083at 89.249 kb on - strand, within MIT1002_00083at 89.318 kb on - strand, within MIT1002_00083at 89.347 kb on + strand, within MIT1002_00083at 89.417 kb on + strandat 89.459 kb on + strandat 89.478 kb on + strandat 89.507 kb on - strandat 89.554 kb on - strandat 89.554 kb on - strandat 89.660 kb on - strandat 89.675 kb on + strandat 89.675 kb on + strandat 89.711 kb on - strandat 89.791 kb on - strandat 89.799 kb on - strandat 89.849 kb on - strandat 89.879 kb on - strandat 89.962 kb on - strand, within MIT1002_00084at 89.989 kb on + strand, within MIT1002_00084at 89.997 kb on - strand, within MIT1002_00084at 90.025 kb on - strand, within MIT1002_00084at 90.064 kb on + strand, within MIT1002_00084at 90.064 kb on + strand, within MIT1002_00084at 90.064 kb on + strand, within MIT1002_00084at 90.064 kb on + strand, within MIT1002_00084at 90.064 kb on + strand, within MIT1002_00084at 90.064 kb on + strand, within MIT1002_00084at 90.072 kb on - strand, within MIT1002_00084at 90.072 kb on - strand, within MIT1002_00084at 90.072 kb on - strand, within MIT1002_00084at 90.072 kb on - strand, within MIT1002_00084at 90.072 kb on - strand, within MIT1002_00084at 90.072 kb on - strand, within MIT1002_00084at 90.072 kb on - strand, within MIT1002_00084at 90.072 kb on - strand, within MIT1002_00084at 90.072 kb on - strand, within MIT1002_00084at 90.088 kb on - strand, within MIT1002_00084at 90.090 kb on + strand, within MIT1002_00084at 90.108 kb on - strand, within MIT1002_00084at 90.111 kb on + strand, within MIT1002_00084at 90.111 kb on + strand, within MIT1002_00084at 90.119 kb on - strand, within MIT1002_00084at 90.166 kb on - strand, within MIT1002_00084at 90.171 kb on + strand, within MIT1002_00084at 90.173 kb on - strand, within MIT1002_00084at 90.260 kb on + strand, within MIT1002_00084at 90.268 kb on - strand, within MIT1002_00084at 90.268 kb on - strand, within MIT1002_00084at 90.268 kb on - strand, within MIT1002_00084at 90.283 kb on + strand, within MIT1002_00084at 90.293 kb on + strand, within MIT1002_00084at 90.296 kb on - strand, within MIT1002_00084at 90.308 kb on - strand, within MIT1002_00084at 90.335 kb on - strand, within MIT1002_00084at 90.362 kb on - strand, within MIT1002_00084at 90.426 kb on + strand, within MIT1002_00084

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
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87,861 + MIT1002_00082 0.40 -0.3
87,861 + MIT1002_00082 0.40 -0.1
87,866 - MIT1002_00082 0.40 +0.2
87,868 + MIT1002_00082 0.40 +0.9
87,928 + MIT1002_00082 0.45 -2.0
87,955 - MIT1002_00082 0.48 +0.5
87,994 - MIT1002_00082 0.51 +0.2
88,060 + MIT1002_00082 0.56 +0.0
88,060 + MIT1002_00082 0.56 -0.3
88,085 - MIT1002_00082 0.59 -0.5
88,108 - MIT1002_00082 0.60 -1.0
88,144 + MIT1002_00082 0.63 -0.6
88,152 - MIT1002_00082 0.64 +1.6
88,195 - MIT1002_00082 0.68 +0.7
88,274 + MIT1002_00082 0.74 +0.6
88,274 + MIT1002_00082 0.74 -0.4
88,274 + MIT1002_00082 0.74 +0.4
88,282 - MIT1002_00082 0.75 +0.6
88,290 - MIT1002_00082 0.76 -2.0
88,412 - MIT1002_00082 0.86 -2.8
88,464 - +0.2
88,491 + +0.3
88,569 + +0.2
88,577 - +0.6
88,602 + +0.4
88,646 + +0.7
88,651 + -1.4
88,651 + +0.1
88,651 + -0.1
88,651 + +1.7
88,652 + +0.4
88,659 - +0.1
88,659 - +0.2
88,659 - +0.7
88,659 - +1.2
88,659 - +1.9
88,690 - +0.2
88,701 + +0.3
88,701 + +1.1
88,709 - -2.5
88,879 + +0.1
88,889 + -0.1
88,922 + MIT1002_00083 0.11 +0.3
88,955 - MIT1002_00083 0.17 -0.2
88,955 - MIT1002_00083 0.17 -0.1
89,014 + MIT1002_00083 0.27 +0.1
89,022 - MIT1002_00083 0.28 +0.3
89,037 - MIT1002_00083 0.31 +0.3
89,088 + MIT1002_00083 0.40 -1.0
89,115 + MIT1002_00083 0.45 -3.3
89,125 + MIT1002_00083 0.46 -2.0
89,205 - MIT1002_00083 0.60 -0.3
89,249 - MIT1002_00083 0.68 +1.1
89,249 - MIT1002_00083 0.68 -0.4
89,249 - MIT1002_00083 0.68 -1.2
89,318 - MIT1002_00083 0.80 -0.4
89,347 + MIT1002_00083 0.85 -0.1
89,417 + +0.0
89,459 + -0.1
89,478 + +0.5
89,507 - -0.6
89,554 - +0.1
89,554 - +0.0
89,660 - -0.1
89,675 + -2.3
89,675 + +1.1
89,711 - +0.4
89,791 - +1.8
89,799 - -2.8
89,849 - +1.4
89,879 - -0.3
89,962 - MIT1002_00084 0.12 +0.5
89,989 + MIT1002_00084 0.13 -0.0
89,997 - MIT1002_00084 0.14 -1.8
90,025 - MIT1002_00084 0.15 -0.7
90,064 + MIT1002_00084 0.17 +0.3
90,064 + MIT1002_00084 0.17 -1.1
90,064 + MIT1002_00084 0.17 +0.1
90,064 + MIT1002_00084 0.17 +0.4
90,064 + MIT1002_00084 0.17 -1.8
90,064 + MIT1002_00084 0.17 +1.0
90,072 - MIT1002_00084 0.17 +0.2
90,072 - MIT1002_00084 0.17 -0.4
90,072 - MIT1002_00084 0.17 -0.3
90,072 - MIT1002_00084 0.17 +0.3
90,072 - MIT1002_00084 0.17 -0.8
90,072 - MIT1002_00084 0.17 +0.3
90,072 - MIT1002_00084 0.17 +0.5
90,072 - MIT1002_00084 0.17 -0.6
90,072 - MIT1002_00084 0.17 -0.7
90,088 - MIT1002_00084 0.18 +1.4
90,090 + MIT1002_00084 0.18 -0.4
90,108 - MIT1002_00084 0.19 +1.1
90,111 + MIT1002_00084 0.19 -0.0
90,111 + MIT1002_00084 0.19 +0.1
90,119 - MIT1002_00084 0.19 +0.6
90,166 - MIT1002_00084 0.22 -2.0
90,171 + MIT1002_00084 0.22 -0.4
90,173 - MIT1002_00084 0.22 -0.9
90,260 + MIT1002_00084 0.26 -0.3
90,268 - MIT1002_00084 0.27 -1.4
90,268 - MIT1002_00084 0.27 -1.5
90,268 - MIT1002_00084 0.27 +0.8
90,283 + MIT1002_00084 0.27 +0.0
90,293 + MIT1002_00084 0.28 +0.1
90,296 - MIT1002_00084 0.28 +0.1
90,308 - MIT1002_00084 0.28 +0.9
90,335 - MIT1002_00084 0.30 -3.3
90,362 - MIT1002_00084 0.31 -0.4
90,426 + MIT1002_00084 0.34 -0.4

Or see this region's nucleotide sequence