Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00041

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00040 and MIT1002_00041 are separated by 36 nucleotidesMIT1002_00041 and MIT1002_00042 are separated by 2 nucleotidesMIT1002_00042 and MIT1002_00043 are separated by 247 nucleotides MIT1002_00040: MIT1002_00040 - Error-prone DNA polymerase, at 43,264 to 46,353 _00040 MIT1002_00041: MIT1002_00041 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 46,390 to 47,874 _00041 MIT1002_00042: MIT1002_00042 - SOS cell division inhibitor, at 47,877 to 48,626 _00042 MIT1002_00043: MIT1002_00043 - hypothetical protein, at 48,874 to 49,383 _00043 Position (kb) 46 47 48Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 45.394 kb on + strand, within MIT1002_00040at 45.480 kb on + strand, within MIT1002_00040at 45.494 kb on - strand, within MIT1002_00040at 45.510 kb on + strand, within MIT1002_00040at 45.510 kb on + strand, within MIT1002_00040at 45.553 kb on + strand, within MIT1002_00040at 45.559 kb on + strand, within MIT1002_00040at 45.559 kb on + strand, within MIT1002_00040at 45.559 kb on - strand, within MIT1002_00040at 45.566 kb on + strand, within MIT1002_00040at 45.566 kb on + strand, within MIT1002_00040at 45.566 kb on + strand, within MIT1002_00040at 45.574 kb on - strand, within MIT1002_00040at 45.581 kb on + strand, within MIT1002_00040at 45.587 kb on + strand, within MIT1002_00040at 45.589 kb on - strand, within MIT1002_00040at 45.589 kb on - strand, within MIT1002_00040at 45.600 kb on - strand, within MIT1002_00040at 45.600 kb on - strand, within MIT1002_00040at 45.649 kb on + strand, within MIT1002_00040at 45.659 kb on + strand, within MIT1002_00040at 45.667 kb on - strand, within MIT1002_00040at 45.704 kb on + strand, within MIT1002_00040at 45.704 kb on + strand, within MIT1002_00040at 45.704 kb on + strand, within MIT1002_00040at 45.712 kb on - strand, within MIT1002_00040at 45.712 kb on - strand, within MIT1002_00040at 45.750 kb on + strand, within MIT1002_00040at 45.758 kb on - strand, within MIT1002_00040at 45.758 kb on - strand, within MIT1002_00040at 45.758 kb on - strand, within MIT1002_00040at 45.758 kb on - strand, within MIT1002_00040at 45.758 kb on - strand, within MIT1002_00040at 45.802 kb on + strand, within MIT1002_00040at 45.807 kb on + strand, within MIT1002_00040at 45.807 kb on + strand, within MIT1002_00040at 45.807 kb on + strand, within MIT1002_00040at 45.810 kb on - strand, within MIT1002_00040at 45.825 kb on - strand, within MIT1002_00040at 45.844 kb on + strand, within MIT1002_00040at 45.868 kb on + strand, within MIT1002_00040at 45.869 kb on - strand, within MIT1002_00040at 45.869 kb on - strand, within MIT1002_00040at 45.905 kb on + strand, within MIT1002_00040at 45.920 kb on + strand, within MIT1002_00040at 45.947 kb on + strand, within MIT1002_00040at 45.947 kb on + strand, within MIT1002_00040at 45.947 kb on + strand, within MIT1002_00040at 45.960 kb on - strand, within MIT1002_00040at 46.010 kb on - strand, within MIT1002_00040at 46.017 kb on + strand, within MIT1002_00040at 46.050 kb on - strandat 46.188 kb on - strandat 46.188 kb on - strandat 46.223 kb on + strandat 46.277 kb on + strandat 46.294 kb on + strandat 46.360 kb on + strandat 46.369 kb on - strandat 46.402 kb on + strandat 46.402 kb on + strandat 46.438 kb on + strandat 46.446 kb on - strandat 46.446 kb on - strandat 46.447 kb on - strandat 46.453 kb on + strandat 46.516 kb on + strandat 46.525 kb on + strandat 46.578 kb on + strand, within MIT1002_00041at 46.580 kb on - strand, within MIT1002_00041at 46.697 kb on - strand, within MIT1002_00041at 46.755 kb on + strand, within MIT1002_00041at 46.816 kb on + strand, within MIT1002_00041at 46.838 kb on + strand, within MIT1002_00041at 46.903 kb on + strand, within MIT1002_00041at 46.909 kb on - strand, within MIT1002_00041at 46.941 kb on - strand, within MIT1002_00041at 46.988 kb on - strand, within MIT1002_00041at 47.042 kb on + strand, within MIT1002_00041at 47.047 kb on - strand, within MIT1002_00041at 47.048 kb on - strand, within MIT1002_00041at 47.079 kb on + strand, within MIT1002_00041at 47.105 kb on + strand, within MIT1002_00041at 47.105 kb on + strand, within MIT1002_00041at 47.113 kb on - strand, within MIT1002_00041at 47.113 kb on - strand, within MIT1002_00041at 47.139 kb on - strand, within MIT1002_00041at 47.140 kb on + strand, within MIT1002_00041at 47.150 kb on + strand, within MIT1002_00041at 47.165 kb on - strand, within MIT1002_00041at 47.215 kb on - strand, within MIT1002_00041at 47.220 kb on - strand, within MIT1002_00041at 47.227 kb on + strand, within MIT1002_00041at 47.232 kb on + strand, within MIT1002_00041at 47.240 kb on - strand, within MIT1002_00041at 47.240 kb on - strand, within MIT1002_00041at 47.240 kb on - strand, within MIT1002_00041at 47.265 kb on - strand, within MIT1002_00041at 47.297 kb on - strand, within MIT1002_00041at 47.386 kb on - strand, within MIT1002_00041at 47.435 kb on + strand, within MIT1002_00041at 47.443 kb on - strand, within MIT1002_00041at 47.490 kb on + strand, within MIT1002_00041at 47.560 kb on - strand, within MIT1002_00041at 47.560 kb on - strand, within MIT1002_00041at 47.566 kb on + strand, within MIT1002_00041at 47.613 kb on + strand, within MIT1002_00041at 47.642 kb on + strand, within MIT1002_00041at 47.655 kb on - strand, within MIT1002_00041at 47.698 kb on - strand, within MIT1002_00041at 47.698 kb on - strand, within MIT1002_00041at 47.720 kb on + strand, within MIT1002_00041at 47.720 kb on + strand, within MIT1002_00041at 47.720 kb on + strand, within MIT1002_00041at 47.725 kb on + strand, within MIT1002_00041at 47.728 kb on - strandat 47.728 kb on - strandat 47.738 kb on - strandat 47.741 kb on + strandat 47.802 kb on - strandat 47.841 kb on - strandat 47.841 kb on - strandat 48.025 kb on + strand, within MIT1002_00042at 48.031 kb on + strand, within MIT1002_00042at 48.032 kb on + strand, within MIT1002_00042at 48.038 kb on - strand, within MIT1002_00042at 48.039 kb on - strand, within MIT1002_00042at 48.063 kb on + strand, within MIT1002_00042at 48.071 kb on - strand, within MIT1002_00042at 48.073 kb on - strand, within MIT1002_00042at 48.115 kb on - strand, within MIT1002_00042at 48.157 kb on + strand, within MIT1002_00042at 48.157 kb on + strand, within MIT1002_00042at 48.157 kb on + strand, within MIT1002_00042at 48.157 kb on + strand, within MIT1002_00042at 48.183 kb on + strand, within MIT1002_00042at 48.232 kb on + strand, within MIT1002_00042at 48.238 kb on + strand, within MIT1002_00042at 48.240 kb on + strand, within MIT1002_00042at 48.246 kb on - strand, within MIT1002_00042at 48.248 kb on - strand, within MIT1002_00042at 48.248 kb on - strand, within MIT1002_00042at 48.253 kb on - strand, within MIT1002_00042at 48.253 kb on - strand, within MIT1002_00042at 48.297 kb on - strand, within MIT1002_00042at 48.341 kb on + strand, within MIT1002_00042at 48.382 kb on - strand, within MIT1002_00042at 48.415 kb on - strand, within MIT1002_00042at 48.485 kb on - strand, within MIT1002_00042at 48.571 kb on + strandat 48.665 kb on - strandat 48.670 kb on + strandat 48.678 kb on - strandat 48.679 kb on - strandat 48.787 kb on - strandat 48.793 kb on - strandat 48.811 kb on + strandat 48.823 kb on + strandat 48.831 kb on - strandat 48.838 kb on - strandat 48.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 3
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45,394 + MIT1002_00040 0.69 +0.3
45,480 + MIT1002_00040 0.72 -1.5
45,494 - MIT1002_00040 0.72 -0.6
45,510 + MIT1002_00040 0.73 +0.5
45,510 + MIT1002_00040 0.73 +1.1
45,553 + MIT1002_00040 0.74 -1.2
45,559 + MIT1002_00040 0.74 -0.4
45,559 + MIT1002_00040 0.74 -0.2
45,559 - MIT1002_00040 0.74 -1.0
45,566 + MIT1002_00040 0.74 -0.4
45,566 + MIT1002_00040 0.74 -0.8
45,566 + MIT1002_00040 0.74 -1.1
45,574 - MIT1002_00040 0.75 +1.9
45,581 + MIT1002_00040 0.75 +1.1
45,587 + MIT1002_00040 0.75 +0.0
45,589 - MIT1002_00040 0.75 -0.1
45,589 - MIT1002_00040 0.75 +2.6
45,600 - MIT1002_00040 0.76 +1.0
45,600 - MIT1002_00040 0.76 -0.6
45,649 + MIT1002_00040 0.77 +0.1
45,659 + MIT1002_00040 0.78 -0.4
45,667 - MIT1002_00040 0.78 +0.6
45,704 + MIT1002_00040 0.79 +0.5
45,704 + MIT1002_00040 0.79 -0.6
45,704 + MIT1002_00040 0.79 -0.1
45,712 - MIT1002_00040 0.79 -0.5
45,712 - MIT1002_00040 0.79 -0.5
45,750 + MIT1002_00040 0.80 +2.0
45,758 - MIT1002_00040 0.81 -2.6
45,758 - MIT1002_00040 0.81 -1.3
45,758 - MIT1002_00040 0.81 -1.0
45,758 - MIT1002_00040 0.81 +1.5
45,758 - MIT1002_00040 0.81 +0.1
45,802 + MIT1002_00040 0.82 +2.0
45,807 + MIT1002_00040 0.82 +0.7
45,807 + MIT1002_00040 0.82 +0.3
45,807 + MIT1002_00040 0.82 +0.6
45,810 - MIT1002_00040 0.82 -0.3
45,825 - MIT1002_00040 0.83 -2.3
45,844 + MIT1002_00040 0.83 +1.1
45,868 + MIT1002_00040 0.84 +0.7
45,869 - MIT1002_00040 0.84 -0.2
45,869 - MIT1002_00040 0.84 +0.1
45,905 + MIT1002_00040 0.85 -0.7
45,920 + MIT1002_00040 0.86 -0.1
45,947 + MIT1002_00040 0.87 -0.4
45,947 + MIT1002_00040 0.87 -0.8
45,947 + MIT1002_00040 0.87 +0.2
45,960 - MIT1002_00040 0.87 -0.1
46,010 - MIT1002_00040 0.89 -2.6
46,017 + MIT1002_00040 0.89 +1.0
46,050 - -0.5
46,188 - -0.2
46,188 - +0.1
46,223 + -0.3
46,277 + -0.7
46,294 + -3.0
46,360 + +0.4
46,369 - +0.4
46,402 + -1.9
46,402 + +0.5
46,438 + +0.5
46,446 - +0.4
46,446 - +0.2
46,447 - +0.1
46,453 + +0.6
46,516 + -1.0
46,525 + -1.1
46,578 + MIT1002_00041 0.13 +0.2
46,580 - MIT1002_00041 0.13 -1.0
46,697 - MIT1002_00041 0.21 -0.1
46,755 + MIT1002_00041 0.25 -0.0
46,816 + MIT1002_00041 0.29 -0.5
46,838 + MIT1002_00041 0.30 +0.1
46,903 + MIT1002_00041 0.35 -0.5
46,909 - MIT1002_00041 0.35 -0.2
46,941 - MIT1002_00041 0.37 -0.7
46,988 - MIT1002_00041 0.40 -0.3
47,042 + MIT1002_00041 0.44 -0.3
47,047 - MIT1002_00041 0.44 +1.6
47,048 - MIT1002_00041 0.44 -0.3
47,079 + MIT1002_00041 0.46 -0.5
47,105 + MIT1002_00041 0.48 -0.3
47,105 + MIT1002_00041 0.48 +0.1
47,113 - MIT1002_00041 0.49 +0.1
47,113 - MIT1002_00041 0.49 -0.6
47,139 - MIT1002_00041 0.50 +0.4
47,140 + MIT1002_00041 0.51 -0.2
47,150 + MIT1002_00041 0.51 -1.0
47,165 - MIT1002_00041 0.52 +0.1
47,215 - MIT1002_00041 0.56 -1.9
47,220 - MIT1002_00041 0.56 -0.3
47,227 + MIT1002_00041 0.56 +0.7
47,232 + MIT1002_00041 0.57 -0.3
47,240 - MIT1002_00041 0.57 +0.8
47,240 - MIT1002_00041 0.57 -1.5
47,240 - MIT1002_00041 0.57 +0.1
47,265 - MIT1002_00041 0.59 -1.3
47,297 - MIT1002_00041 0.61 -0.8
47,386 - MIT1002_00041 0.67 +0.9
47,435 + MIT1002_00041 0.70 -0.2
47,443 - MIT1002_00041 0.71 -1.4
47,490 + MIT1002_00041 0.74 -1.0
47,560 - MIT1002_00041 0.79 -0.1
47,560 - MIT1002_00041 0.79 +0.8
47,566 + MIT1002_00041 0.79 -0.2
47,613 + MIT1002_00041 0.82 +0.2
47,642 + MIT1002_00041 0.84 -0.1
47,655 - MIT1002_00041 0.85 -0.4
47,698 - MIT1002_00041 0.88 -0.3
47,698 - MIT1002_00041 0.88 -1.6
47,720 + MIT1002_00041 0.90 +0.1
47,720 + MIT1002_00041 0.90 -0.2
47,720 + MIT1002_00041 0.90 +0.6
47,725 + MIT1002_00041 0.90 +0.7
47,728 - -0.2
47,728 - +0.3
47,738 - +0.4
47,741 + +0.8
47,802 - -1.1
47,841 - +0.5
47,841 - +0.3
48,025 + MIT1002_00042 0.20 +0.6
48,031 + MIT1002_00042 0.21 -0.2
48,032 + MIT1002_00042 0.21 +0.8
48,038 - MIT1002_00042 0.21 +0.6
48,039 - MIT1002_00042 0.22 +0.3
48,063 + MIT1002_00042 0.25 +1.8
48,071 - MIT1002_00042 0.26 -0.4
48,073 - MIT1002_00042 0.26 -1.1
48,115 - MIT1002_00042 0.32 -0.9
48,157 + MIT1002_00042 0.37 -0.3
48,157 + MIT1002_00042 0.37 +0.6
48,157 + MIT1002_00042 0.37 +1.8
48,157 + MIT1002_00042 0.37 +0.8
48,183 + MIT1002_00042 0.41 -1.9
48,232 + MIT1002_00042 0.47 -0.1
48,238 + MIT1002_00042 0.48 -1.0
48,240 + MIT1002_00042 0.48 -0.0
48,246 - MIT1002_00042 0.49 -0.5
48,248 - MIT1002_00042 0.49 -0.7
48,248 - MIT1002_00042 0.49 -0.3
48,253 - MIT1002_00042 0.50 +0.6
48,253 - MIT1002_00042 0.50 -1.4
48,297 - MIT1002_00042 0.56 +0.2
48,341 + MIT1002_00042 0.62 -0.5
48,382 - MIT1002_00042 0.67 -1.3
48,415 - MIT1002_00042 0.72 -0.6
48,485 - MIT1002_00042 0.81 -0.4
48,571 + +0.0
48,665 - +0.2
48,670 + -0.1
48,678 - -2.3
48,679 - -0.8
48,787 - -0.9
48,793 - -0.0
48,811 + +2.1
48,823 + +0.4
48,831 - +2.2
48,838 - -0.1
48,848 - +0.4

Or see this region's nucleotide sequence