Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04089

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04088 and MIT1002_04089 are separated by 227 nucleotidesMIT1002_04089 and MIT1002_04090 are separated by 1 nucleotides MIT1002_04088: MIT1002_04088 - Reverse transcriptase (RNA-dependent DNA polymerase), at 4,583,643 to 4,586,585 _04088 MIT1002_04089: MIT1002_04089 - type IV secretion/conjugal transfer ATPase, VirB4 family, at 4,586,813 to 4,588,552 _04089 MIT1002_04090: MIT1002_04090 - hypothetical protein, at 4,588,554 to 4,589,639 _04090 Position (kb) 4586 4587 4588 4589Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4585.851 kb on + strand, within MIT1002_04088at 4585.868 kb on + strand, within MIT1002_04088at 4585.874 kb on + strand, within MIT1002_04088at 4585.883 kb on - strand, within MIT1002_04088at 4585.893 kb on - strand, within MIT1002_04088at 4586.014 kb on - strand, within MIT1002_04088at 4586.019 kb on - strand, within MIT1002_04088at 4586.072 kb on + strand, within MIT1002_04088at 4586.072 kb on + strand, within MIT1002_04088at 4586.072 kb on + strand, within MIT1002_04088at 4586.102 kb on - strand, within MIT1002_04088at 4586.127 kb on + strand, within MIT1002_04088at 4586.127 kb on + strand, within MIT1002_04088at 4586.134 kb on + strand, within MIT1002_04088at 4586.135 kb on - strand, within MIT1002_04088at 4586.163 kb on + strand, within MIT1002_04088at 4586.184 kb on - strand, within MIT1002_04088at 4586.216 kb on - strand, within MIT1002_04088at 4586.234 kb on + strand, within MIT1002_04088at 4586.335 kb on + strandat 4586.369 kb on + strandat 4586.406 kb on + strandat 4586.465 kb on - strandat 4586.476 kb on + strandat 4586.525 kb on + strandat 4586.525 kb on + strandat 4586.536 kb on - strandat 4586.538 kb on - strandat 4586.538 kb on - strandat 4586.616 kb on - strandat 4586.663 kb on + strandat 4586.777 kb on + strandat 4586.777 kb on + strandat 4586.785 kb on - strandat 4586.811 kb on + strandat 4586.811 kb on + strandat 4586.819 kb on - strandat 4586.831 kb on - strandat 4586.831 kb on - strandat 4586.973 kb on - strandat 4587.015 kb on + strand, within MIT1002_04089at 4587.101 kb on + strand, within MIT1002_04089at 4587.102 kb on + strand, within MIT1002_04089at 4587.112 kb on + strand, within MIT1002_04089at 4587.157 kb on - strand, within MIT1002_04089at 4587.171 kb on - strand, within MIT1002_04089at 4587.184 kb on - strand, within MIT1002_04089at 4587.206 kb on + strand, within MIT1002_04089at 4587.224 kb on - strand, within MIT1002_04089at 4587.231 kb on + strand, within MIT1002_04089at 4587.262 kb on - strand, within MIT1002_04089at 4587.265 kb on + strand, within MIT1002_04089at 4587.283 kb on + strand, within MIT1002_04089at 4587.283 kb on + strand, within MIT1002_04089at 4587.299 kb on + strand, within MIT1002_04089at 4587.299 kb on + strand, within MIT1002_04089at 4587.307 kb on - strand, within MIT1002_04089at 4587.309 kb on + strand, within MIT1002_04089at 4587.309 kb on + strand, within MIT1002_04089at 4587.317 kb on - strand, within MIT1002_04089at 4587.354 kb on - strand, within MIT1002_04089at 4587.397 kb on + strand, within MIT1002_04089at 4587.397 kb on + strand, within MIT1002_04089at 4587.397 kb on - strand, within MIT1002_04089at 4587.466 kb on + strand, within MIT1002_04089at 4587.474 kb on - strand, within MIT1002_04089at 4587.474 kb on - strand, within MIT1002_04089at 4587.588 kb on + strand, within MIT1002_04089at 4587.644 kb on + strand, within MIT1002_04089at 4587.649 kb on + strand, within MIT1002_04089at 4587.652 kb on - strand, within MIT1002_04089at 4587.657 kb on - strand, within MIT1002_04089at 4587.659 kb on + strand, within MIT1002_04089at 4587.659 kb on + strand, within MIT1002_04089at 4587.659 kb on + strand, within MIT1002_04089at 4587.659 kb on + strand, within MIT1002_04089at 4587.664 kb on + strand, within MIT1002_04089at 4587.666 kb on + strand, within MIT1002_04089at 4587.667 kb on - strand, within MIT1002_04089at 4587.667 kb on - strand, within MIT1002_04089at 4587.667 kb on - strand, within MIT1002_04089at 4587.672 kb on - strand, within MIT1002_04089at 4587.674 kb on - strand, within MIT1002_04089at 4587.719 kb on - strand, within MIT1002_04089at 4587.756 kb on - strand, within MIT1002_04089at 4587.860 kb on - strand, within MIT1002_04089at 4587.891 kb on + strand, within MIT1002_04089at 4587.891 kb on + strand, within MIT1002_04089at 4588.031 kb on - strand, within MIT1002_04089at 4588.046 kb on + strand, within MIT1002_04089at 4588.086 kb on - strand, within MIT1002_04089at 4588.086 kb on - strand, within MIT1002_04089at 4588.086 kb on - strand, within MIT1002_04089at 4588.086 kb on - strand, within MIT1002_04089at 4588.086 kb on - strand, within MIT1002_04089at 4588.093 kb on + strand, within MIT1002_04089at 4588.101 kb on - strand, within MIT1002_04089at 4588.101 kb on - strand, within MIT1002_04089at 4588.103 kb on + strand, within MIT1002_04089at 4588.103 kb on + strand, within MIT1002_04089at 4588.111 kb on - strand, within MIT1002_04089at 4588.111 kb on - strand, within MIT1002_04089at 4588.173 kb on - strand, within MIT1002_04089at 4588.204 kb on - strand, within MIT1002_04089at 4588.206 kb on - strand, within MIT1002_04089at 4588.264 kb on - strand, within MIT1002_04089at 4588.275 kb on + strand, within MIT1002_04089at 4588.275 kb on + strand, within MIT1002_04089at 4588.283 kb on - strand, within MIT1002_04089at 4588.289 kb on + strand, within MIT1002_04089at 4588.415 kb on - strandat 4588.422 kb on + strandat 4588.422 kb on + strandat 4588.430 kb on - strandat 4588.430 kb on - strandat 4588.432 kb on + strandat 4588.464 kb on + strandat 4588.464 kb on + strandat 4588.516 kb on + strandat 4588.518 kb on + strandat 4588.524 kb on - strandat 4588.524 kb on - strandat 4588.559 kb on - strandat 4588.559 kb on - strandat 4588.593 kb on + strandat 4588.640 kb on + strandat 4588.690 kb on + strand, within MIT1002_04090at 4588.755 kb on + strand, within MIT1002_04090at 4588.755 kb on + strand, within MIT1002_04090at 4588.763 kb on - strand, within MIT1002_04090at 4588.763 kb on - strand, within MIT1002_04090at 4588.879 kb on + strand, within MIT1002_04090at 4588.884 kb on + strand, within MIT1002_04090at 4588.887 kb on - strand, within MIT1002_04090at 4588.887 kb on - strand, within MIT1002_04090at 4588.934 kb on + strand, within MIT1002_04090at 4588.934 kb on + strand, within MIT1002_04090at 4588.948 kb on + strand, within MIT1002_04090at 4588.966 kb on - strand, within MIT1002_04090at 4589.076 kb on + strand, within MIT1002_04090at 4589.076 kb on + strand, within MIT1002_04090at 4589.084 kb on - strand, within MIT1002_04090at 4589.138 kb on + strand, within MIT1002_04090at 4589.180 kb on + strand, within MIT1002_04090at 4589.304 kb on + strand, within MIT1002_04090at 4589.540 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
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4,585,851 + MIT1002_04088 0.75 +1.0
4,585,868 + MIT1002_04088 0.76 +1.1
4,585,874 + MIT1002_04088 0.76 -0.4
4,585,883 - MIT1002_04088 0.76 +1.4
4,585,893 - MIT1002_04088 0.76 +0.6
4,586,014 - MIT1002_04088 0.81 +0.2
4,586,019 - MIT1002_04088 0.81 -0.5
4,586,072 + MIT1002_04088 0.83 -0.3
4,586,072 + MIT1002_04088 0.83 -0.0
4,586,072 + MIT1002_04088 0.83 +0.1
4,586,102 - MIT1002_04088 0.84 +0.1
4,586,127 + MIT1002_04088 0.84 -1.0
4,586,127 + MIT1002_04088 0.84 -2.2
4,586,134 + MIT1002_04088 0.85 +0.6
4,586,135 - MIT1002_04088 0.85 -0.3
4,586,163 + MIT1002_04088 0.86 +0.3
4,586,184 - MIT1002_04088 0.86 +0.3
4,586,216 - MIT1002_04088 0.87 +0.4
4,586,234 + MIT1002_04088 0.88 +1.0
4,586,335 + -0.6
4,586,369 + +0.8
4,586,406 + +0.2
4,586,465 - +0.6
4,586,476 + +0.9
4,586,525 + +0.0
4,586,525 + +1.6
4,586,536 - +1.7
4,586,538 - -1.0
4,586,538 - -0.3
4,586,616 - -0.7
4,586,663 + +0.1
4,586,777 + +0.6
4,586,777 + +0.5
4,586,785 - +0.3
4,586,811 + -2.0
4,586,811 + -0.0
4,586,819 - +0.7
4,586,831 - -2.5
4,586,831 - -1.7
4,586,973 - +1.1
4,587,015 + MIT1002_04089 0.12 -0.8
4,587,101 + MIT1002_04089 0.17 +2.0
4,587,102 + MIT1002_04089 0.17 +0.8
4,587,112 + MIT1002_04089 0.17 +1.0
4,587,157 - MIT1002_04089 0.20 -0.1
4,587,171 - MIT1002_04089 0.21 -0.4
4,587,184 - MIT1002_04089 0.21 +0.9
4,587,206 + MIT1002_04089 0.23 -0.2
4,587,224 - MIT1002_04089 0.24 -0.5
4,587,231 + MIT1002_04089 0.24 +0.9
4,587,262 - MIT1002_04089 0.26 +1.6
4,587,265 + MIT1002_04089 0.26 -0.4
4,587,283 + MIT1002_04089 0.27 +1.8
4,587,283 + MIT1002_04089 0.27 -0.2
4,587,299 + MIT1002_04089 0.28 -0.2
4,587,299 + MIT1002_04089 0.28 +0.8
4,587,307 - MIT1002_04089 0.28 -1.4
4,587,309 + MIT1002_04089 0.29 +0.4
4,587,309 + MIT1002_04089 0.29 +0.7
4,587,317 - MIT1002_04089 0.29 +0.4
4,587,354 - MIT1002_04089 0.31 -2.5
4,587,397 + MIT1002_04089 0.34 -1.0
4,587,397 + MIT1002_04089 0.34 -2.2
4,587,397 - MIT1002_04089 0.34 +1.0
4,587,466 + MIT1002_04089 0.38 -0.7
4,587,474 - MIT1002_04089 0.38 +3.2
4,587,474 - MIT1002_04089 0.38 +1.1
4,587,588 + MIT1002_04089 0.45 -0.4
4,587,644 + MIT1002_04089 0.48 -0.4
4,587,649 + MIT1002_04089 0.48 -2.0
4,587,652 - MIT1002_04089 0.48 -0.5
4,587,657 - MIT1002_04089 0.49 +0.3
4,587,659 + MIT1002_04089 0.49 +0.6
4,587,659 + MIT1002_04089 0.49 +0.1
4,587,659 + MIT1002_04089 0.49 +0.1
4,587,659 + MIT1002_04089 0.49 -1.0
4,587,664 + MIT1002_04089 0.49 +0.4
4,587,666 + MIT1002_04089 0.49 -0.7
4,587,667 - MIT1002_04089 0.49 +0.1
4,587,667 - MIT1002_04089 0.49 -0.4
4,587,667 - MIT1002_04089 0.49 +0.1
4,587,672 - MIT1002_04089 0.49 +0.4
4,587,674 - MIT1002_04089 0.49 -0.9
4,587,719 - MIT1002_04089 0.52 +0.3
4,587,756 - MIT1002_04089 0.54 -1.0
4,587,860 - MIT1002_04089 0.60 -0.4
4,587,891 + MIT1002_04089 0.62 +0.1
4,587,891 + MIT1002_04089 0.62 -0.5
4,588,031 - MIT1002_04089 0.70 -0.0
4,588,046 + MIT1002_04089 0.71 +1.3
4,588,086 - MIT1002_04089 0.73 +0.2
4,588,086 - MIT1002_04089 0.73 -0.7
4,588,086 - MIT1002_04089 0.73 -0.1
4,588,086 - MIT1002_04089 0.73 +1.9
4,588,086 - MIT1002_04089 0.73 -0.7
4,588,093 + MIT1002_04089 0.74 -0.5
4,588,101 - MIT1002_04089 0.74 +0.3
4,588,101 - MIT1002_04089 0.74 -1.3
4,588,103 + MIT1002_04089 0.74 -1.2
4,588,103 + MIT1002_04089 0.74 -1.7
4,588,111 - MIT1002_04089 0.75 -2.6
4,588,111 - MIT1002_04089 0.75 -0.0
4,588,173 - MIT1002_04089 0.78 -1.0
4,588,204 - MIT1002_04089 0.80 -1.3
4,588,206 - MIT1002_04089 0.80 -0.3
4,588,264 - MIT1002_04089 0.83 +1.0
4,588,275 + MIT1002_04089 0.84 +0.1
4,588,275 + MIT1002_04089 0.84 -1.6
4,588,283 - MIT1002_04089 0.84 +0.9
4,588,289 + MIT1002_04089 0.85 -0.6
4,588,415 - +1.0
4,588,422 + -0.1
4,588,422 + -0.4
4,588,430 - -0.6
4,588,430 - +0.2
4,588,432 + -0.5
4,588,464 + -0.9
4,588,464 + +0.8
4,588,516 + +0.4
4,588,518 + +1.0
4,588,524 - -2.2
4,588,524 - -1.4
4,588,559 - +0.1
4,588,559 - +1.1
4,588,593 + +0.0
4,588,640 + -1.2
4,588,690 + MIT1002_04090 0.13 +1.1
4,588,755 + MIT1002_04090 0.19 +1.9
4,588,755 + MIT1002_04090 0.19 +1.0
4,588,763 - MIT1002_04090 0.19 +0.5
4,588,763 - MIT1002_04090 0.19 +0.2
4,588,879 + MIT1002_04090 0.30 +1.1
4,588,884 + MIT1002_04090 0.30 +0.4
4,588,887 - MIT1002_04090 0.31 +1.0
4,588,887 - MIT1002_04090 0.31 -0.9
4,588,934 + MIT1002_04090 0.35 +0.3
4,588,934 + MIT1002_04090 0.35 -0.5
4,588,948 + MIT1002_04090 0.36 -0.3
4,588,966 - MIT1002_04090 0.38 +0.5
4,589,076 + MIT1002_04090 0.48 +0.6
4,589,076 + MIT1002_04090 0.48 +1.7
4,589,084 - MIT1002_04090 0.49 +0.9
4,589,138 + MIT1002_04090 0.54 +0.6
4,589,180 + MIT1002_04090 0.58 -0.5
4,589,304 + MIT1002_04090 0.69 -1.1
4,589,540 + +1.6

Or see this region's nucleotide sequence