Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03905

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
4,374,821	+		MIT1002_03904	0.22	+0.4
4,374,857	+		MIT1002_03904	0.25	+0.2
4,374,973	+		MIT1002_03904	0.35	+1.9
4,375,054	+		MIT1002_03904	0.42	-1.7
4,375,084	-		MIT1002_03904	0.45	+1.3
4,375,100	+		MIT1002_03904	0.46	-0.5
4,375,102	-		MIT1002_03904	0.46	-0.8
4,375,107	-		MIT1002_03904	0.47	-0.1
4,375,107	-		MIT1002_03904	0.47	-0.7
4,375,123	+		MIT1002_03904	0.48	+0.9
4,375,133	+		MIT1002_03904	0.49	+1.4
4,375,161	-		MIT1002_03904	0.51	+0.4
4,375,175	-		MIT1002_03904	0.52	+0.7
4,375,177	+		MIT1002_03904	0.53	+0.4
4,375,192	+		MIT1002_03904	0.54	-0.3
4,375,258	+		MIT1002_03904	0.60	+0.7
4,375,407	-		MIT1002_03904	0.73	-2.1
4,375,462	+		MIT1002_03904	0.77	-1.3
4,375,474	+		MIT1002_03904	0.79	-0.3
4,375,514	+		MIT1002_03904	0.82	+0.5
4,375,560	-		MIT1002_03904	0.86	+1.0
4,375,562	+		MIT1002_03904	0.86	+0.6
4,375,626	+				+0.7
4,375,636	+				+2.5
4,375,665	-				-1.4
4,375,769	+				+1.0
4,375,769	+				-2.5
4,375,777	-				-0.2
4,375,779	+				-1.4
4,375,779	+				-1.3
4,375,787	-				-3.5
4,375,787	-				-0.8
4,375,787	-				-1.5
4,375,787	-				-1.6
4,375,788	-				-0.2
4,375,890	-				-0.0
4,375,910	+				-2.8
4,375,918	-				-0.7
4,376,025	+		MIT1002_03905	0.14	-2.0
4,376,067	+		MIT1002_03905	0.16	-2.2
4,376,072	+		MIT1002_03905	0.16	-0.2
4,376,072	+		MIT1002_03905	0.16	-1.0
4,376,085	-		MIT1002_03905	0.17	-1.9
4,376,140	+		MIT1002_03905	0.20	-0.7
4,376,183	-		MIT1002_03905	0.22	-3.3
4,376,317	+		MIT1002_03905	0.29	-1.6
4,376,344	-		MIT1002_03905	0.30	-2.0
4,376,372	+		MIT1002_03905	0.32	-2.8
4,376,372	+		MIT1002_03905	0.32	-1.0
4,376,397	+		MIT1002_03905	0.33	-2.7
4,376,460	+		MIT1002_03905	0.36	+0.2
4,376,516	+		MIT1002_03905	0.39	-2.0
4,376,524	-		MIT1002_03905	0.40	-0.3
4,376,524	-		MIT1002_03905	0.40	-1.5
4,376,559	+		MIT1002_03905	0.42	-2.7
4,376,564	-		MIT1002_03905	0.42	-0.2
4,376,618	+		MIT1002_03905	0.45	+3.2
4,376,637	+		MIT1002_03905	0.46	-3.1
4,376,763	-		MIT1002_03905	0.52	+0.4
4,376,910	-		MIT1002_03905	0.60	-3.9
4,376,910	-		MIT1002_03905	0.60	-2.0
4,376,955	+		MIT1002_03905	0.62	-0.2
4,376,972	+		MIT1002_03905	0.63	-0.8
4,376,972	+		MIT1002_03905	0.63	-1.8
4,376,972	+		MIT1002_03905	0.63	-3.2
4,376,972	+		MIT1002_03905	0.63	-2.8
4,376,972	+		MIT1002_03905	0.63	-1.0
4,376,987	-		MIT1002_03905	0.64	-2.4
4,377,121	+		MIT1002_03905	0.71	-1.2
4,377,187	+		MIT1002_03905	0.74	+0.8
4,377,187	+		MIT1002_03905	0.74	-1.2
4,377,190	-		MIT1002_03905	0.75	-0.7
4,377,205	-		MIT1002_03905	0.75	-0.9
4,377,249	+		MIT1002_03905	0.78	-2.9
4,377,272	+		MIT1002_03905	0.79	+0.2
4,377,302	+		MIT1002_03905	0.80	-3.5
4,377,323	-		MIT1002_03905	0.82	-1.0
4,377,381	+		MIT1002_03905	0.85	-1.7
4,377,393	+		MIT1002_03905	0.85	-2.1
4,377,401	-		MIT1002_03905	0.86	-1.8
4,377,426	+		MIT1002_03905	0.87	-1.4
4,377,437	-		MIT1002_03905	0.88	-1.9
4,377,449	-		MIT1002_03905	0.88	-0.2
4,377,559	-				-2.1
4,377,634	+				-1.2
4,377,642	-				+0.1
4,377,668	-				-3.0
4,377,702	+				+0.6
4,377,702	+				-0.8
4,377,702	+				-0.7
4,377,702	+				-0.9
4,377,705	-				-0.4
4,377,710	-				-0.9
4,377,738	+				-1.5
4,377,746	-				-0.6
4,377,752	+				+2.4
4,377,752	+				-3.6
4,377,752	+				-1.0
4,377,760	-				+0.3
4,377,912	-		MIT1002_03906	0.19	+0.6
4,378,011	+		MIT1002_03906	0.42	-0.9
4,378,014	-		MIT1002_03906	0.43	+0.7
4,378,019	+		MIT1002_03906	0.44	-1.2
4,378,112	+		MIT1002_03906	0.66	-0.4
4,378,253	+				-0.3
4,378,253	-				-0.4
4,378,267	+				-0.0
4,378,307	+				-0.5
4,378,344	-				+0.0
4,378,357	-				+0.7
4,378,377	-				-1.8
4,378,377	-				-0.6
4,378,438	+				-0.0
4,378,438	+				-0.6
4,378,438	+				+1.0
4,378,438	+				+0.4
4,378,446	-				-1.2
4,378,446	-				+0.1
4,378,446	-				-0.3
4,378,487	+				-5.6
4,378,492	+				-3.1
4,378,492	+				-2.4
4,378,492	+				-5.6
4,378,492	+				-2.3
4,378,500	-				-3.3
4,378,500	-				-3.1
4,378,602	-		MIT1002_03907	0.12	-5.0
4,378,620	+		MIT1002_03907	0.13	-3.0
4,378,639	-		MIT1002_03907	0.14	-3.2
4,378,658	+		MIT1002_03907	0.16	-4.0
4,378,660	-		MIT1002_03907	0.16	-3.5
4,378,660	-		MIT1002_03907	0.16	-2.4
4,378,662	-		MIT1002_03907	0.16	-3.6