Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03640

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
4,068,276	+		MIT1002_03639	0.62	+0.3
4,068,379	+		MIT1002_03639	0.66	-0.0
4,068,406	-		MIT1002_03639	0.67	+1.8
4,068,424	-		MIT1002_03639	0.68	+0.8
4,068,686	+		MIT1002_03639	0.80	-0.3
4,068,693	+		MIT1002_03639	0.80	-1.2
4,068,693	+		MIT1002_03639	0.80	+1.1
4,068,737	+		MIT1002_03639	0.82	+0.7
4,068,837	+		MIT1002_03639	0.87	-0.3
4,068,898	+		MIT1002_03639	0.90	+0.7
4,068,951	-				+1.6
4,068,988	+				+0.9
4,068,996	-				-1.0
4,069,007	+				-0.6
4,069,007	-				+0.4
4,069,012	+				-2.5
4,069,086	+				+0.2
4,069,121	-				-0.5
4,069,126	-				-1.1
4,069,128	+				+0.1
4,069,134	+				-0.8
4,069,249	+				+1.5
4,069,257	-				-0.0
4,069,266	+				-0.2
4,069,276	+				-0.0
4,069,276	+				-0.5
4,069,282	+				+1.0
4,069,303	-				-0.5
4,069,326	+				+0.8
4,069,326	+				-2.0
4,069,334	-				-1.5
4,069,347	+				+1.4
4,069,347	+				+2.5
4,069,347	+				+0.4
4,069,347	+				+0.7
4,069,355	-				-0.9
4,069,355	-				+1.1
4,069,355	-				+0.8
4,069,355	-				+1.6
4,069,355	-				-0.0
4,069,407	+				-0.9
4,069,411	+				+0.2
4,069,424	-				-0.5
4,069,476	-		MIT1002_03640	0.10	-1.9
4,069,506	-		MIT1002_03640	0.12	-1.3
4,069,517	-		MIT1002_03640	0.12	-0.9
4,069,575	+		MIT1002_03640	0.15	-0.6
4,069,615	-		MIT1002_03640	0.17	-0.6
4,069,695	-		MIT1002_03640	0.21	-0.8
4,069,731	+		MIT1002_03640	0.22	+0.3
4,069,731	+		MIT1002_03640	0.22	+1.1
4,069,739	-		MIT1002_03640	0.23	+0.4
4,069,739	-		MIT1002_03640	0.23	+0.6
4,069,739	-		MIT1002_03640	0.23	-2.0
4,069,739	-		MIT1002_03640	0.23	+0.3
4,069,751	-		MIT1002_03640	0.23	-3.1
4,069,785	-		MIT1002_03640	0.25	+0.4
4,069,812	-		MIT1002_03640	0.26	-1.0
4,069,850	-		MIT1002_03640	0.28	+0.5
4,069,905	-		MIT1002_03640	0.31	+0.1
4,069,905	-		MIT1002_03640	0.31	+0.3
4,069,933	+		MIT1002_03640	0.32	-1.5
4,069,933	+		MIT1002_03640	0.32	-2.2
4,069,934	+		MIT1002_03640	0.32	+1.9
4,069,963	+		MIT1002_03640	0.33	+2.3
4,069,971	-		MIT1002_03640	0.34	+0.1
4,069,971	-		MIT1002_03640	0.34	+1.2
4,069,971	-		MIT1002_03640	0.34	+0.0
4,069,980	+		MIT1002_03640	0.34	+0.3
4,070,000	+		MIT1002_03640	0.35	+0.7
4,070,007	-		MIT1002_03640	0.35	+0.2
4,070,008	-		MIT1002_03640	0.35	-0.9
4,070,031	-		MIT1002_03640	0.36	+2.3
4,070,055	-		MIT1002_03640	0.38	-0.5
4,070,058	-		MIT1002_03640	0.38	-0.5
4,070,058	-		MIT1002_03640	0.38	+0.4
4,070,088	+		MIT1002_03640	0.39	-1.2
4,070,118	-		MIT1002_03640	0.41	+0.5
4,070,134	-		MIT1002_03640	0.41	+0.8
4,070,247	-		MIT1002_03640	0.47	-1.2
4,070,260	-		MIT1002_03640	0.47	+1.1
4,070,285	+		MIT1002_03640	0.48	-0.1
4,070,336	+		MIT1002_03640	0.51	-0.1
4,070,377	-		MIT1002_03640	0.53	-0.7
4,070,377	-		MIT1002_03640	0.53	+0.2
4,070,383	-		MIT1002_03640	0.53	+0.2
4,070,390	+		MIT1002_03640	0.53	+1.7
4,070,477	-		MIT1002_03640	0.58	+2.0
4,070,481	+		MIT1002_03640	0.58	+0.8
4,070,481	+		MIT1002_03640	0.58	-0.8
4,070,489	-		MIT1002_03640	0.58	-2.3
4,070,524	-		MIT1002_03640	0.60	+0.4
4,070,524	-		MIT1002_03640	0.60	-0.9
4,070,524	-		MIT1002_03640	0.60	-0.5
4,070,524	-		MIT1002_03640	0.60	+0.6
4,070,524	-		MIT1002_03640	0.60	-0.3
4,070,551	-		MIT1002_03640	0.61	+0.6
4,070,562	+		MIT1002_03640	0.62	+1.1
4,070,588	-		MIT1002_03640	0.63	-0.2
4,070,588	-		MIT1002_03640	0.63	+0.3
4,070,625	+		MIT1002_03640	0.64	+1.5
4,070,783	+		MIT1002_03640	0.72	-1.3
4,070,854	-		MIT1002_03640	0.75	+1.2
4,070,878	-		MIT1002_03640	0.76	+0.5
4,070,905	-		MIT1002_03640	0.78	+0.2
4,070,917	-		MIT1002_03640	0.78	-0.0
4,071,034	+		MIT1002_03640	0.84	-0.1
4,071,063	+		MIT1002_03640	0.85	+0.7
4,071,065	-		MIT1002_03640	0.85	+2.7
4,071,075	-		MIT1002_03640	0.86	-0.8
4,071,075	-		MIT1002_03640	0.86	-0.0
4,071,094	+		MIT1002_03640	0.87	+2.8
4,071,128	-		MIT1002_03640	0.88	+0.8
4,071,161	+		MIT1002_03640	0.90	-1.1
4,071,179	-				+0.6
4,071,234	-				-1.1
4,071,242	+				-0.0
4,071,253	+				+0.1
4,071,286	+				+0.0
4,071,304	+				+0.3
4,071,374	-				+0.4
4,071,374	-				+1.3
4,071,420	-				-0.1
4,071,531	-				-0.3
4,071,607	-		MIT1002_03641	0.13	+0.4
4,071,619	+		MIT1002_03641	0.15	-2.6
4,071,722	+		MIT1002_03641	0.24	+0.1
4,071,781	-		MIT1002_03641	0.30	+1.3
4,071,909	-		MIT1002_03641	0.42	-2.8
4,071,959	-		MIT1002_03641	0.46	-1.5
4,071,986	+		MIT1002_03641	0.49	+0.3
4,071,986	+		MIT1002_03641	0.49	-0.3
4,072,024	+		MIT1002_03641	0.52	-1.0
4,072,071	+		MIT1002_03641	0.57	-0.0
4,072,108	+		MIT1002_03641	0.60	-0.2
4,072,212	+		MIT1002_03641	0.70	-4.2
4,072,240	+		MIT1002_03641	0.72	-0.3
4,072,291	-		MIT1002_03641	0.77	-0.2
4,072,292	+		MIT1002_03641	0.77	-0.1