Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03220

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
3,589,036	+		MIT1002_03218	0.39	-1.1
3,589,041	+		MIT1002_03218	0.41	+0.7
3,589,044	-		MIT1002_03218	0.41	+1.3
3,589,044	-		MIT1002_03218	0.41	-0.1
3,589,047	-		MIT1002_03218	0.42	+0.1
3,589,049	-		MIT1002_03218	0.43	+0.7
3,589,072	+		MIT1002_03218	0.48	-0.3
3,589,072	-		MIT1002_03218	0.48	+1.7
3,589,078	-		MIT1002_03218	0.50	-0.2
3,589,103	-		MIT1002_03218	0.56	+0.4
3,589,103	-		MIT1002_03218	0.56	+1.1
3,589,130	+		MIT1002_03218	0.62	+1.8
3,589,142	+		MIT1002_03218	0.65	+1.9
3,589,150	-		MIT1002_03218	0.67	+0.1
3,589,152	+		MIT1002_03218	0.68	+0.7
3,589,152	+		MIT1002_03218	0.68	+1.4
3,589,213	+		MIT1002_03218	0.83	+0.3
3,589,221	-		MIT1002_03218	0.85	+0.4
3,589,221	-		MIT1002_03218	0.85	-1.1
3,589,264	-				+0.6
3,589,377	-				+1.6
3,589,377	-				-0.6
3,589,445	+				+1.0
3,589,528	-		MIT1002_03219	0.10	-0.3
3,589,537	+		MIT1002_03219	0.12	-0.4
3,589,563	+		MIT1002_03219	0.18	-0.2
3,589,619	+		MIT1002_03219	0.30	+0.1
3,589,701	+		MIT1002_03219	0.49	+0.1
3,589,709	+		MIT1002_03219	0.51	-1.9
3,589,709	+		MIT1002_03219	0.51	-0.8
3,589,715	+		MIT1002_03219	0.52	-0.3
3,589,717	-		MIT1002_03219	0.52	+0.4
3,589,718	-		MIT1002_03219	0.53	-1.1
3,589,802	-		MIT1002_03219	0.71	+0.0
3,589,824	+		MIT1002_03219	0.76	-1.2
3,589,927	-				+0.2
3,589,931	+				+0.9
3,589,931	+				+2.9
3,589,931	+				-0.2
3,589,945	+				+0.7
3,589,953	-				+0.6
3,590,053	-				-0.2
3,590,112	+				+0.3
3,590,120	-				+1.3
3,590,130	+				-0.4
3,590,138	-				-1.1
3,590,166	+		MIT1002_03220	0.11	-1.6
3,590,221	+		MIT1002_03220	0.13	+0.9
3,590,229	-		MIT1002_03220	0.14	+0.9
3,590,343	-		MIT1002_03220	0.19	-0.2
3,590,354	-		MIT1002_03220	0.20	-0.1
3,590,479	-		MIT1002_03220	0.26	+0.8
3,590,513	-		MIT1002_03220	0.28	-0.4
3,590,513	-		MIT1002_03220	0.28	-0.4
3,590,557	-		MIT1002_03220	0.30	+0.2
3,590,567	+		MIT1002_03220	0.30	+0.6
3,590,570	+		MIT1002_03220	0.31	+1.6
3,590,614	-		MIT1002_03220	0.33	+0.3
3,590,697	+		MIT1002_03220	0.37	-0.5
3,590,755	-		MIT1002_03220	0.40	-1.6
3,590,850	-		MIT1002_03220	0.44	-0.3
3,590,855	-		MIT1002_03220	0.45	+0.3
3,590,870	-		MIT1002_03220	0.45	-1.9
3,590,930	-		MIT1002_03220	0.48	+0.9
3,590,946	+		MIT1002_03220	0.49	+0.2
3,590,946	+		MIT1002_03220	0.49	+0.6
3,590,946	+		MIT1002_03220	0.49	-0.4
3,590,946	+		MIT1002_03220	0.49	-0.5
3,590,946	+		MIT1002_03220	0.49	-0.7
3,590,954	-		MIT1002_03220	0.49	-0.2
3,590,954	-		MIT1002_03220	0.49	+0.8
3,590,954	-		MIT1002_03220	0.49	-0.6
3,591,056	+		MIT1002_03220	0.54	+0.3
3,591,088	+		MIT1002_03220	0.56	+1.2
3,591,102	+		MIT1002_03220	0.57	-1.3
3,591,131	+		MIT1002_03220	0.58	-0.2
3,591,184	+		MIT1002_03220	0.61	-0.9
3,591,192	-		MIT1002_03220	0.61	-1.0
3,591,253	+		MIT1002_03220	0.64	+0.7
3,591,263	+		MIT1002_03220	0.65	-1.1
3,591,283	-		MIT1002_03220	0.66	+1.3
3,591,283	-		MIT1002_03220	0.66	+1.0
3,591,290	-		MIT1002_03220	0.66	+0.0
3,591,350	-		MIT1002_03220	0.69	-0.4
3,591,355	-		MIT1002_03220	0.69	+0.2
3,591,383	+		MIT1002_03220	0.71	+1.1
3,591,423	+		MIT1002_03220	0.73	-0.1
3,591,423	+		MIT1002_03220	0.73	-1.4
3,591,425	-		MIT1002_03220	0.73	+0.2
3,591,457	+		MIT1002_03220	0.74	-2.5
3,591,634	-		MIT1002_03220	0.83	+1.4
3,591,755	+		MIT1002_03220	0.89	+1.4
3,591,763	-		MIT1002_03220	0.89	-0.1
3,591,763	-		MIT1002_03220	0.89	-0.6
3,591,773	-		MIT1002_03220	0.90	+0.1
3,591,788	+				-0.2
3,591,840	-				+0.3
3,591,855	+				-0.8
3,591,938	+				-0.9
3,591,938	+				+0.8
3,591,977	+				-0.7
3,591,979	+				+2.8
3,591,979	+				-0.4
3,591,987	-				+2.4
3,591,987	-				-1.6
3,592,003	+				-0.6
3,592,159	-		MIT1002_03221	0.19	-0.3
3,592,218	+		MIT1002_03221	0.26	+0.9
3,592,248	-		MIT1002_03221	0.29	-0.6
3,592,262	-		MIT1002_03221	0.30	-0.5
3,592,274	+		MIT1002_03221	0.32	+1.7
3,592,295	+		MIT1002_03221	0.34	+1.7
3,592,295	+		MIT1002_03221	0.34	+0.0
3,592,308	-		MIT1002_03221	0.36	+0.6
3,592,313	+		MIT1002_03221	0.36	+0.8
3,592,330	-		MIT1002_03221	0.38	+0.4
3,592,364	+		MIT1002_03221	0.42	-1.5
3,592,387	-		MIT1002_03221	0.44	-0.4
3,592,396	+		MIT1002_03221	0.45	+0.7
3,592,404	-		MIT1002_03221	0.46	-1.2
3,592,406	+		MIT1002_03221	0.46	+0.6
3,592,414	-		MIT1002_03221	0.47	+0.6
3,592,457	-		MIT1002_03221	0.52	-0.2
3,592,457	-		MIT1002_03221	0.52	+1.0
3,592,459	+		MIT1002_03221	0.52	+0.5
3,592,564	-		MIT1002_03221	0.64	+0.5
3,592,603	-		MIT1002_03221	0.68	-0.3
3,592,685	-		MIT1002_03221	0.78	+0.5
3,592,803	+				-0.2
3,592,803	+				+1.0
3,592,803	+				-0.5
3,592,811	-				+0.3
3,592,811	-				+0.6
3,592,811	-				+1.3
3,592,811	-				+0.4
3,592,811	-				+0.9
3,592,857	-				+0.3
3,592,861	+				+0.4
3,592,863	+				+1.4
3,592,863	+				-0.1
3,592,863	+				+0.1
3,592,869	-				-0.7
3,592,869	-				+1.3
3,592,871	-				+2.6
3,592,871	-				-2.4