Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02546

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
2,839,730	+		MIT1002_02544	0.76	+0.2
2,839,730	+		MIT1002_02544	0.76	+0.0
2,839,730	+		MIT1002_02544	0.76	+1.6
2,839,738	-		MIT1002_02544	0.77	-1.3
2,839,738	-		MIT1002_02544	0.77	-0.3
2,839,753	-		MIT1002_02544	0.79	+0.5
2,839,761	+		MIT1002_02544	0.80	-2.2
2,839,826	+		MIT1002_02544	0.89	-0.4
2,839,844	-				+1.9
2,839,848	-				-1.6
2,839,852	+				-1.0
2,839,939	+				-0.3
2,839,982	+				+0.2
2,840,018	-		MIT1002_02545	0.13	+1.3
2,840,114	-		MIT1002_02545	0.26	-0.8
2,840,293	+		MIT1002_02545	0.49	-2.3
2,840,293	+		MIT1002_02545	0.49	-0.1
2,840,293	+		MIT1002_02545	0.49	-0.5
2,840,293	+		MIT1002_02545	0.49	-0.7
2,840,293	+		MIT1002_02545	0.49	+0.1
2,840,301	-		MIT1002_02545	0.50	-0.7
2,840,301	-		MIT1002_02545	0.50	-0.5
2,840,301	-		MIT1002_02545	0.50	+0.3
2,840,301	-		MIT1002_02545	0.50	-0.1
2,840,301	-		MIT1002_02545	0.50	-0.7
2,840,301	-		MIT1002_02545	0.50	-1.1
2,840,301	-		MIT1002_02545	0.50	+2.6
2,840,321	-		MIT1002_02545	0.53	+1.7
2,840,474	+		MIT1002_02545	0.73	-0.5
2,840,476	+		MIT1002_02545	0.73	-0.5
2,840,476	+		MIT1002_02545	0.73	+0.6
2,840,490	-		MIT1002_02545	0.75	-0.0
2,840,548	-		MIT1002_02545	0.82	+0.0
2,840,629	-				+1.0
2,840,683	+				-0.3
2,840,683	+				-0.5
2,840,691	-				-0.7
2,840,705	-				-0.3
2,840,762	-		MIT1002_02546	0.11	-0.9
2,840,764	+		MIT1002_02546	0.12	+1.0
2,840,819	+		MIT1002_02546	0.20	+0.9
2,840,850	+		MIT1002_02546	0.25	+0.8
2,840,850	+		MIT1002_02546	0.25	-0.7
2,840,911	+		MIT1002_02546	0.34	+0.1
2,840,911	+		MIT1002_02546	0.34	-0.4
2,840,911	+		MIT1002_02546	0.34	-0.7
2,840,911	+		MIT1002_02546	0.34	+0.6
2,840,919	-		MIT1002_02546	0.35	+0.9
2,840,919	-		MIT1002_02546	0.35	-0.1
2,840,966	-		MIT1002_02546	0.42	-0.5
2,841,002	+		MIT1002_02546	0.47	-0.6
2,841,012	+		MIT1002_02546	0.49	+4.5
2,841,056	+		MIT1002_02546	0.56	-0.7
2,841,059	-		MIT1002_02546	0.56	+0.9
2,841,175	+		MIT1002_02546	0.73	+0.8
2,841,218	+		MIT1002_02546	0.80	-0.7
2,841,250	+		MIT1002_02546	0.85	+0.6
2,841,253	-		MIT1002_02546	0.85	-0.8
2,841,256	+		MIT1002_02546	0.86	+0.2
2,841,552	+				+0.9
2,841,576	-				+2.5
2,841,578	+				-1.7
2,841,654	+				-1.9
2,841,719	+				-1.4
2,841,746	-				-0.7
2,841,766	+				-1.7
2,841,782	+				-0.6
2,841,794	+				-1.4
2,841,794	+				-0.2
2,841,795	-				+0.2
2,841,802	-				-0.0
2,841,802	-				+1.5
2,841,802	-				-0.6
2,841,811	+		MIT1002_02547	0.11	+0.3
2,841,819	-		MIT1002_02547	0.13	-0.8
2,841,819	-		MIT1002_02547	0.13	+0.6
2,841,862	+		MIT1002_02547	0.23	-0.8
2,841,870	-		MIT1002_02547	0.25	-0.5
2,841,871	-		MIT1002_02547	0.25	-0.5
2,841,957	-		MIT1002_02547	0.46	+0.5
2,842,014	-		MIT1002_02547	0.60	-0.6
2,842,014	-		MIT1002_02547	0.60	-0.7
2,842,016	+		MIT1002_02547	0.60	+0.3
2,842,018	+		MIT1002_02547	0.60	+0.1
2,842,082	+		MIT1002_02547	0.76	-1.3
2,842,084	+		MIT1002_02547	0.76	-0.2
2,842,095	+		MIT1002_02547	0.79	+0.6
2,842,095	+		MIT1002_02547	0.79	-2.4
2,842,095	+		MIT1002_02547	0.79	-0.5
2,842,095	+		MIT1002_02547	0.79	+0.4
2,842,096	+		MIT1002_02547	0.79	+1.1
2,842,103	-		MIT1002_02547	0.81	+1.4
2,842,103	-		MIT1002_02547	0.81	+1.3
2,842,133	+		MIT1002_02547	0.88	+1.4
2,842,133	+		MIT1002_02547	0.88	-1.1
2,842,133	+		MIT1002_02547	0.88	+1.0
2,842,133	+		MIT1002_02547	0.88	+0.0
2,842,141	-		MIT1002_02547	0.90	-1.6
2,842,164	+				+0.7
2,842,235	+				-1.5
2,842,264	-		MIT1002_02548	0.14	-0.8