Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02335

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
2,601,226	+				-1.7
2,601,226	+				-1.2
2,601,226	+				-0.4
2,601,282	+		MIT1002_02334	0.12	+0.9
2,601,350	+		MIT1002_02334	0.18	-0.2
2,601,365	+		MIT1002_02334	0.20	-1.8
2,601,365	-		MIT1002_02334	0.20	+0.2
2,601,365	-		MIT1002_02334	0.20	+0.8
2,601,417	+		MIT1002_02334	0.25	+0.2
2,601,434	+		MIT1002_02334	0.27	-0.7
2,601,446	+		MIT1002_02334	0.28	+0.5
2,601,486	-		MIT1002_02334	0.32	-1.9
2,601,582	+		MIT1002_02334	0.41	-0.3
2,601,600	-		MIT1002_02334	0.43	-1.1
2,601,680	+		MIT1002_02334	0.51	+0.7
2,601,688	-		MIT1002_02334	0.52	-1.0
2,601,713	-		MIT1002_02334	0.54	-0.9
2,601,718	-		MIT1002_02334	0.55	+0.8
2,601,718	-		MIT1002_02334	0.55	+0.5
2,601,801	+		MIT1002_02334	0.63	-0.3
2,601,801	+		MIT1002_02334	0.63	-1.1
2,601,801	+		MIT1002_02334	0.63	-0.5
2,601,809	-		MIT1002_02334	0.64	-0.5
2,601,809	-		MIT1002_02334	0.64	+1.2
2,601,809	-		MIT1002_02334	0.64	-0.5
2,601,809	-		MIT1002_02334	0.64	-0.0
2,601,851	+		MIT1002_02334	0.68	-0.4
2,601,903	-		MIT1002_02334	0.73	+0.7
2,601,970	-		MIT1002_02334	0.80	+1.7
2,602,067	+		MIT1002_02334	0.89	-0.8
2,602,108	-				+0.4
2,602,123	-				-0.5
2,602,145	-				-0.9
2,602,210	+				+0.4
2,602,229	+				-1.3
2,602,378	-		MIT1002_02335	0.18	-0.2
2,602,378	-		MIT1002_02335	0.18	+0.0
2,602,378	-		MIT1002_02335	0.18	-0.6
2,602,378	-		MIT1002_02335	0.18	+0.2
2,602,378	-		MIT1002_02335	0.18	-0.7
2,602,378	-		MIT1002_02335	0.18	+0.2
2,602,378	-		MIT1002_02335	0.18	-0.9
2,602,417	+		MIT1002_02335	0.22	+0.9
2,602,425	-		MIT1002_02335	0.23	-0.1
2,602,431	+		MIT1002_02335	0.23	+0.8
2,602,431	+		MIT1002_02335	0.23	+0.6
2,602,452	+		MIT1002_02335	0.25	+0.4
2,602,462	+		MIT1002_02335	0.26	+1.2
2,602,470	-		MIT1002_02335	0.27	+2.0
2,602,470	-		MIT1002_02335	0.27	+1.5
2,602,491	+		MIT1002_02335	0.29	+0.3
2,602,518	+		MIT1002_02335	0.32	+0.4
2,602,574	-		MIT1002_02335	0.38	+1.7
2,602,584	+		MIT1002_02335	0.39	+0.2
2,602,594	+		MIT1002_02335	0.40	+0.3
2,602,602	-		MIT1002_02335	0.40	-0.2
2,602,665	+		MIT1002_02335	0.47	-0.9
2,602,665	-		MIT1002_02335	0.47	-0.6
2,602,673	+		MIT1002_02335	0.47	-0.8
2,602,681	-		MIT1002_02335	0.48	+2.0
2,602,681	-		MIT1002_02335	0.48	-2.7
2,602,681	-		MIT1002_02335	0.48	-0.8
2,602,681	-		MIT1002_02335	0.48	+1.8
2,602,686	-		MIT1002_02335	0.49	+1.8
2,602,697	+		MIT1002_02335	0.50	-0.3
2,602,991	+		MIT1002_02335	0.79	-0.7
2,602,993	+		MIT1002_02335	0.79	+0.6
2,602,993	+		MIT1002_02335	0.79	+0.1
2,602,999	-		MIT1002_02335	0.80	-1.6
2,603,028	+		MIT1002_02335	0.83	-0.2
2,603,092	+		MIT1002_02335	0.89	+1.5
2,603,092	+		MIT1002_02335	0.89	+2.0
2,603,127	+				-1.1
2,603,141	+				-0.9
2,603,141	+				+1.8
2,603,149	-				-0.1
2,603,149	-				-2.8
2,603,149	-				+0.7
2,603,151	+				-2.5
2,603,151	+				+1.7
2,603,159	-				+0.1
2,603,188	+				+1.0
2,603,196	-				+0.1
2,603,203	+				+0.3
2,603,235	+				-1.3
2,603,283	+				-1.0
2,603,283	+				+0.2
2,603,283	+				-0.8
2,603,301	-				-1.9
2,603,301	-				+0.6
2,603,508	+		MIT1002_02336	0.30	-0.5
2,603,508	+		MIT1002_02336	0.30	+0.7
2,603,508	+		MIT1002_02336	0.30	-0.2
2,603,515	-		MIT1002_02336	0.31	-0.6
2,603,516	-		MIT1002_02336	0.31	+0.8
2,603,516	-		MIT1002_02336	0.31	+0.7
2,603,526	+		MIT1002_02336	0.33	-0.4
2,603,550	+		MIT1002_02336	0.36	-0.6
2,603,579	+		MIT1002_02336	0.40	-0.3
2,603,656	+		MIT1002_02336	0.50	+1.5
2,603,664	-		MIT1002_02336	0.51	+0.2
2,603,664	-		MIT1002_02336	0.51	-0.3
2,603,671	+		MIT1002_02336	0.52	-0.5
2,603,672	-		MIT1002_02336	0.52	-2.9
2,603,737	-		MIT1002_02336	0.61	-1.0
2,603,805	+		MIT1002_02336	0.70	-0.6
2,603,814	-		MIT1002_02336	0.71	-1.8
2,603,887	+		MIT1002_02336	0.80	-0.2
2,603,895	-		MIT1002_02336	0.81	-1.5
2,603,895	-		MIT1002_02336	0.81	+0.7
2,603,921	+		MIT1002_02336	0.85	-0.3
2,603,938	-		MIT1002_02336	0.87	-0.9
2,603,971	-				-0.5
2,603,976	+				+0.8
2,604,201	-				+1.1