Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01851

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01850 and MIT1002_01851 overlap by 1 nucleotidesMIT1002_01851 and MIT1002_01852 are separated by 30 nucleotidesMIT1002_01852 and MIT1002_01853 are separated by 59 nucleotidesMIT1002_01853 and MIT1002_01854 are separated by 17 nucleotides MIT1002_01850: MIT1002_01850 - Rod shape-determining protein RodA, at 2,059,665 to 2,060,780 _01850 MIT1002_01851: MIT1002_01851 - Sporulation-specific penicillin-binding protein, at 2,060,780 to 2,062,693 _01851 MIT1002_01852: MIT1002_01852 - Ribosomal RNA large subunit methyltransferase H, at 2,062,724 to 2,063,251 _01852 MIT1002_01853: MIT1002_01853 - Ribosomal silencing factor RsfS, at 2,063,311 to 2,063,628 _01853 MIT1002_01854: MIT1002_01854 - Nicotinate-nucleotide adenylyltransferase, at 2,063,646 to 2,064,311 _01854 Position (kb) 2060 2061 2062 2063Strain fitness (log2 ratio) -1 0 1 2at 2062.908 kb on - strand, within MIT1002_01852at 2063.526 kb on - strand, within MIT1002_01853at 2063.573 kb on - strand, within MIT1002_01853at 2063.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
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2,062,908 - MIT1002_01852 0.35 +0.1
2,063,526 - MIT1002_01853 0.68 -0.2
2,063,573 - MIT1002_01853 0.82 +1.9
2,063,631 - +2.1

Or see this region's nucleotide sequence