Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01781

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
1,976,094	+		MIT1002_01779	0.75	+0.1
1,976,094	+		MIT1002_01779	0.75	-1.7
1,976,100	-		MIT1002_01779	0.79	+0.9
1,976,132	+				+0.9
1,976,188	+				-0.9
1,976,193	+				+2.2
1,976,196	-				+0.6
1,976,212	+				+0.1
1,976,220	-				-1.4
1,976,327	+		MIT1002_01780	0.21	-3.0
1,976,335	-		MIT1002_01780	0.22	-0.7
1,976,375	+		MIT1002_01780	0.28	+0.6
1,976,375	+		MIT1002_01780	0.28	-0.3
1,976,383	-		MIT1002_01780	0.29	+3.0
1,976,383	-		MIT1002_01780	0.29	+0.4
1,976,383	-		MIT1002_01780	0.29	-1.0
1,976,479	+		MIT1002_01780	0.43	+1.2
1,976,479	+		MIT1002_01780	0.43	-0.3
1,976,583	+		MIT1002_01780	0.59	+0.5
1,976,608	-		MIT1002_01780	0.62	+1.1
1,976,620	+		MIT1002_01780	0.64	-0.9
1,976,695	-		MIT1002_01780	0.75	+0.1
1,976,695	-		MIT1002_01780	0.75	+0.3
1,976,709	+		MIT1002_01780	0.77	-0.5
1,976,811	+				-1.7
1,976,819	-				-0.5
1,976,920	+				-0.1
1,976,920	+				-0.3
1,976,963	-				+0.3
1,976,998	+				+0.6
1,976,998	+				-0.5
1,976,998	+				+2.0
1,977,152	+				+1.2
1,977,240	-		MIT1002_01781	0.10	-0.2
1,977,358	+		MIT1002_01781	0.17	-2.2
1,977,366	-		MIT1002_01781	0.18	+1.3
1,977,424	+		MIT1002_01781	0.21	+0.1
1,977,432	-		MIT1002_01781	0.22	+0.2
1,977,432	-		MIT1002_01781	0.22	-0.1
1,977,486	-		MIT1002_01781	0.25	+1.0
1,977,486	-		MIT1002_01781	0.25	-1.4
1,977,505	+		MIT1002_01781	0.26	+1.7
1,977,521	+		MIT1002_01781	0.27	-1.4
1,977,536	+		MIT1002_01781	0.28	-1.6
1,977,536	+		MIT1002_01781	0.28	-2.7
1,977,544	-		MIT1002_01781	0.28	+1.3
1,977,544	-		MIT1002_01781	0.28	-2.2
1,977,544	-		MIT1002_01781	0.28	+0.3
1,977,544	-		MIT1002_01781	0.28	+0.2
1,977,576	+		MIT1002_01781	0.30	-0.3
1,977,612	+		MIT1002_01781	0.32	+0.8
1,977,689	+		MIT1002_01781	0.37	-0.1
1,977,707	-		MIT1002_01781	0.38	+1.0
1,977,735	+		MIT1002_01781	0.40	+0.4
1,977,812	+		MIT1002_01781	0.44	-1.5
1,977,866	+		MIT1002_01781	0.47	+0.5
1,977,905	+		MIT1002_01781	0.50	-0.5
1,977,932	+		MIT1002_01781	0.51	-1.3
1,977,940	-		MIT1002_01781	0.52	-0.4
1,977,940	-		MIT1002_01781	0.52	-0.1
1,977,940	-		MIT1002_01781	0.52	-1.0
1,977,947	+		MIT1002_01781	0.52	-2.8
1,977,955	-		MIT1002_01781	0.53	-0.1
1,977,955	-		MIT1002_01781	0.53	+0.3
1,978,050	+		MIT1002_01781	0.58	-1.0
1,978,050	+		MIT1002_01781	0.58	+0.0
1,978,052	+		MIT1002_01781	0.58	-0.5
1,978,279	+		MIT1002_01781	0.72	+0.4
1,978,299	+		MIT1002_01781	0.73	-0.0
1,978,299	+		MIT1002_01781	0.73	-1.1
1,978,504	+		MIT1002_01781	0.85	-0.4
1,978,504	+		MIT1002_01781	0.85	+0.3
1,978,517	-		MIT1002_01781	0.86	+0.8
1,978,539	-		MIT1002_01781	0.87	-0.6
1,978,643	+				+0.6
1,978,700	+				+0.5
1,978,701	-				-0.3
1,978,709	+				-0.1
1,978,709	+				+0.4
1,978,717	-				-0.9
1,978,722	+				+0.0
1,978,722	+				+1.4
1,978,749	+				-0.5
1,978,757	-				+0.1
1,978,843	-				-0.1
1,978,844	+				+0.1
1,978,850	-				-0.8
1,978,850	-				+2.6
1,978,850	-				+0.1
1,978,850	-				+0.9
1,978,992	-				-0.2
1,979,005	+				+0.1
1,979,067	+				+0.8
1,979,075	+				-0.2
1,979,075	+				-2.7
1,979,083	-				+0.5
1,979,210	+		MIT1002_01782	0.13	+0.2
1,979,213	-		MIT1002_01782	0.13	-0.3
1,979,215	+		MIT1002_01782	0.13	+0.1
1,979,218	-		MIT1002_01782	0.13	+0.8
1,979,221	-		MIT1002_01782	0.13	+0.7
1,979,223	-		MIT1002_01782	0.13	+0.5
1,979,223	-		MIT1002_01782	0.13	-0.1
1,979,258	-		MIT1002_01782	0.15	-0.3
1,979,291	+		MIT1002_01782	0.16	+0.7
1,979,323	-		MIT1002_01782	0.17	+0.4
1,979,338	+		MIT1002_01782	0.18	+0.5
1,979,365	-		MIT1002_01782	0.19	+0.3
1,979,367	-		MIT1002_01782	0.19	-0.3
1,979,380	+		MIT1002_01782	0.20	+0.4
1,979,438	-		MIT1002_01782	0.22	-0.3
1,979,438	-		MIT1002_01782	0.22	+0.5
1,979,442	+		MIT1002_01782	0.22	+0.6
1,979,450	-		MIT1002_01782	0.22	+1.3
1,979,468	+		MIT1002_01782	0.23	-1.8
1,979,551	+		MIT1002_01782	0.26	-1.2
1,979,551	+		MIT1002_01782	0.26	+1.2
1,979,561	+		MIT1002_01782	0.27	-0.3
1,979,569	-		MIT1002_01782	0.27	+1.5
1,979,569	-		MIT1002_01782	0.27	-1.8
1,979,569	-		MIT1002_01782	0.27	+0.3
1,979,641	+		MIT1002_01782	0.30	-0.2
1,979,688	+		MIT1002_01782	0.31	+1.6
1,979,733	+		MIT1002_01782	0.33	-0.4
1,979,744	-		MIT1002_01782	0.34	+1.0
1,979,746	+		MIT1002_01782	0.34	-0.1