Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01585

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01584 and MIT1002_01585 are separated by 159 nucleotidesMIT1002_01585 and MIT1002_01586 are separated by 14 nucleotides MIT1002_01584: MIT1002_01584 - Stalked cell differentiation-controlling protein, at 1,742,805 to 1,743,725 _01584 MIT1002_01585: MIT1002_01585 - Autoinducer 2 sensor kinase/phosphatase LuxQ, at 1,743,885 to 1,745,888 _01585 MIT1002_01586: MIT1002_01586 - hypothetical protein, at 1,745,903 to 1,747,039 _01586 Position (kb) 1743 1744 1745 1746Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1742.890 kb on - strandat 1742.904 kb on + strand, within MIT1002_01584at 1742.904 kb on + strand, within MIT1002_01584at 1742.912 kb on - strand, within MIT1002_01584at 1742.914 kb on + strand, within MIT1002_01584at 1742.947 kb on - strand, within MIT1002_01584at 1742.973 kb on - strand, within MIT1002_01584at 1742.975 kb on + strand, within MIT1002_01584at 1742.979 kb on - strand, within MIT1002_01584at 1743.027 kb on + strand, within MIT1002_01584at 1743.027 kb on + strand, within MIT1002_01584at 1743.027 kb on + strand, within MIT1002_01584at 1743.035 kb on - strand, within MIT1002_01584at 1743.181 kb on - strand, within MIT1002_01584at 1743.311 kb on + strand, within MIT1002_01584at 1743.395 kb on - strand, within MIT1002_01584at 1743.420 kb on + strand, within MIT1002_01584at 1743.483 kb on + strand, within MIT1002_01584at 1743.491 kb on + strand, within MIT1002_01584at 1743.499 kb on - strand, within MIT1002_01584at 1743.499 kb on - strand, within MIT1002_01584at 1743.577 kb on - strand, within MIT1002_01584at 1743.609 kb on - strand, within MIT1002_01584at 1743.644 kb on - strandat 1743.719 kb on + strandat 1743.811 kb on - strandat 1743.935 kb on + strandat 1743.943 kb on - strandat 1743.945 kb on + strandat 1743.955 kb on + strandat 1743.963 kb on - strandat 1743.970 kb on + strandat 1744.010 kb on - strandat 1744.045 kb on - strandat 1744.101 kb on + strand, within MIT1002_01585at 1744.101 kb on + strand, within MIT1002_01585at 1744.102 kb on - strand, within MIT1002_01585at 1744.109 kb on - strand, within MIT1002_01585at 1744.127 kb on - strand, within MIT1002_01585at 1744.136 kb on + strand, within MIT1002_01585at 1744.136 kb on + strand, within MIT1002_01585at 1744.144 kb on - strand, within MIT1002_01585at 1744.144 kb on - strand, within MIT1002_01585at 1744.144 kb on - strand, within MIT1002_01585at 1744.180 kb on + strand, within MIT1002_01585at 1744.355 kb on - strand, within MIT1002_01585at 1744.386 kb on - strand, within MIT1002_01585at 1744.396 kb on - strand, within MIT1002_01585at 1744.425 kb on - strand, within MIT1002_01585at 1744.469 kb on - strand, within MIT1002_01585at 1744.559 kb on + strand, within MIT1002_01585at 1744.564 kb on + strand, within MIT1002_01585at 1744.567 kb on - strand, within MIT1002_01585at 1744.571 kb on + strand, within MIT1002_01585at 1744.582 kb on - strand, within MIT1002_01585at 1744.585 kb on + strand, within MIT1002_01585at 1744.601 kb on + strand, within MIT1002_01585at 1744.641 kb on + strand, within MIT1002_01585at 1744.720 kb on + strand, within MIT1002_01585at 1744.742 kb on + strand, within MIT1002_01585at 1744.897 kb on + strand, within MIT1002_01585at 1744.935 kb on + strand, within MIT1002_01585at 1745.047 kb on + strand, within MIT1002_01585at 1745.047 kb on + strand, within MIT1002_01585at 1745.047 kb on + strand, within MIT1002_01585at 1745.054 kb on + strand, within MIT1002_01585at 1745.054 kb on + strand, within MIT1002_01585at 1745.055 kb on - strand, within MIT1002_01585at 1745.062 kb on - strand, within MIT1002_01585at 1745.062 kb on - strand, within MIT1002_01585at 1745.062 kb on - strand, within MIT1002_01585at 1745.084 kb on + strand, within MIT1002_01585at 1745.108 kb on - strand, within MIT1002_01585at 1745.152 kb on + strand, within MIT1002_01585at 1745.204 kb on - strand, within MIT1002_01585at 1745.208 kb on + strand, within MIT1002_01585at 1745.236 kb on + strand, within MIT1002_01585at 1745.244 kb on - strand, within MIT1002_01585at 1745.308 kb on + strand, within MIT1002_01585at 1745.308 kb on + strand, within MIT1002_01585at 1745.332 kb on + strand, within MIT1002_01585at 1745.339 kb on - strand, within MIT1002_01585at 1745.340 kb on - strand, within MIT1002_01585at 1745.340 kb on - strand, within MIT1002_01585at 1745.485 kb on + strand, within MIT1002_01585at 1745.485 kb on + strand, within MIT1002_01585at 1745.485 kb on + strand, within MIT1002_01585at 1745.485 kb on + strand, within MIT1002_01585at 1745.485 kb on + strand, within MIT1002_01585at 1745.485 kb on + strand, within MIT1002_01585at 1745.485 kb on + strand, within MIT1002_01585at 1745.493 kb on - strand, within MIT1002_01585at 1745.493 kb on - strand, within MIT1002_01585at 1745.493 kb on - strand, within MIT1002_01585at 1745.493 kb on - strand, within MIT1002_01585at 1745.493 kb on - strand, within MIT1002_01585at 1745.493 kb on - strand, within MIT1002_01585at 1745.495 kb on + strand, within MIT1002_01585at 1745.746 kb on - strandat 1745.844 kb on + strandat 1745.844 kb on - strandat 1745.850 kb on - strandat 1745.867 kb on + strandat 1745.891 kb on - strandat 1745.891 kb on - strandat 1745.897 kb on - strandat 1745.913 kb on + strandat 1745.962 kb on - strandat 1745.965 kb on - strandat 1746.030 kb on - strand, within MIT1002_01586at 1746.059 kb on + strand, within MIT1002_01586at 1746.127 kb on + strand, within MIT1002_01586at 1746.127 kb on + strand, within MIT1002_01586at 1746.132 kb on + strand, within MIT1002_01586at 1746.145 kb on + strand, within MIT1002_01586at 1746.290 kb on + strand, within MIT1002_01586at 1746.342 kb on - strand, within MIT1002_01586at 1746.344 kb on + strand, within MIT1002_01586at 1746.414 kb on + strand, within MIT1002_01586at 1746.422 kb on - strand, within MIT1002_01586at 1746.422 kb on - strand, within MIT1002_01586at 1746.426 kb on + strand, within MIT1002_01586at 1746.434 kb on - strand, within MIT1002_01586at 1746.610 kb on - strand, within MIT1002_01586at 1746.673 kb on + strand, within MIT1002_01586at 1746.681 kb on - strand, within MIT1002_01586at 1746.745 kb on - strand, within MIT1002_01586at 1746.758 kb on + strand, within MIT1002_01586at 1746.791 kb on - strand, within MIT1002_01586at 1746.799 kb on - strand, within MIT1002_01586

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
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1,742,890 - -0.2
1,742,904 + MIT1002_01584 0.11 -1.1
1,742,904 + MIT1002_01584 0.11 +0.6
1,742,912 - MIT1002_01584 0.12 +0.6
1,742,914 + MIT1002_01584 0.12 +0.2
1,742,947 - MIT1002_01584 0.15 +0.2
1,742,973 - MIT1002_01584 0.18 -0.1
1,742,975 + MIT1002_01584 0.18 +0.9
1,742,979 - MIT1002_01584 0.19 -0.2
1,743,027 + MIT1002_01584 0.24 +0.3
1,743,027 + MIT1002_01584 0.24 -0.4
1,743,027 + MIT1002_01584 0.24 -0.5
1,743,035 - MIT1002_01584 0.25 +0.6
1,743,181 - MIT1002_01584 0.41 -0.7
1,743,311 + MIT1002_01584 0.55 +0.2
1,743,395 - MIT1002_01584 0.64 +0.5
1,743,420 + MIT1002_01584 0.67 -0.4
1,743,483 + MIT1002_01584 0.74 +0.0
1,743,491 + MIT1002_01584 0.74 +0.6
1,743,499 - MIT1002_01584 0.75 -0.4
1,743,499 - MIT1002_01584 0.75 +0.4
1,743,577 - MIT1002_01584 0.84 +0.5
1,743,609 - MIT1002_01584 0.87 +0.5
1,743,644 - +0.1
1,743,719 + -3.0
1,743,811 - +2.2
1,743,935 + -1.4
1,743,943 - -2.0
1,743,945 + -0.2
1,743,955 + -0.2
1,743,963 - -0.1
1,743,970 + -1.0
1,744,010 - -2.4
1,744,045 - +0.2
1,744,101 + MIT1002_01585 0.11 -0.8
1,744,101 + MIT1002_01585 0.11 -0.7
1,744,102 - MIT1002_01585 0.11 +0.6
1,744,109 - MIT1002_01585 0.11 +0.1
1,744,127 - MIT1002_01585 0.12 -0.1
1,744,136 + MIT1002_01585 0.13 -3.1
1,744,136 + MIT1002_01585 0.13 +0.0
1,744,144 - MIT1002_01585 0.13 +3.2
1,744,144 - MIT1002_01585 0.13 -1.6
1,744,144 - MIT1002_01585 0.13 +1.7
1,744,180 + MIT1002_01585 0.15 +0.6
1,744,355 - MIT1002_01585 0.23 -0.3
1,744,386 - MIT1002_01585 0.25 +1.1
1,744,396 - MIT1002_01585 0.25 -1.5
1,744,425 - MIT1002_01585 0.27 -0.7
1,744,469 - MIT1002_01585 0.29 -1.8
1,744,559 + MIT1002_01585 0.34 +0.1
1,744,564 + MIT1002_01585 0.34 +0.3
1,744,567 - MIT1002_01585 0.34 -1.2
1,744,571 + MIT1002_01585 0.34 -1.1
1,744,582 - MIT1002_01585 0.35 -1.4
1,744,585 + MIT1002_01585 0.35 +1.2
1,744,601 + MIT1002_01585 0.36 -0.3
1,744,641 + MIT1002_01585 0.38 +0.1
1,744,720 + MIT1002_01585 0.42 -0.5
1,744,742 + MIT1002_01585 0.43 -0.2
1,744,897 + MIT1002_01585 0.50 -0.7
1,744,935 + MIT1002_01585 0.52 -2.9
1,745,047 + MIT1002_01585 0.58 +0.2
1,745,047 + MIT1002_01585 0.58 -0.5
1,745,047 + MIT1002_01585 0.58 -0.5
1,745,054 + MIT1002_01585 0.58 +0.4
1,745,054 + MIT1002_01585 0.58 -0.2
1,745,055 - MIT1002_01585 0.58 +1.5
1,745,062 - MIT1002_01585 0.59 -0.3
1,745,062 - MIT1002_01585 0.59 -1.5
1,745,062 - MIT1002_01585 0.59 -0.9
1,745,084 + MIT1002_01585 0.60 +0.5
1,745,108 - MIT1002_01585 0.61 -0.5
1,745,152 + MIT1002_01585 0.63 -0.5
1,745,204 - MIT1002_01585 0.66 -0.7
1,745,208 + MIT1002_01585 0.66 -0.3
1,745,236 + MIT1002_01585 0.67 -0.4
1,745,244 - MIT1002_01585 0.68 +0.3
1,745,308 + MIT1002_01585 0.71 +0.4
1,745,308 + MIT1002_01585 0.71 -0.7
1,745,332 + MIT1002_01585 0.72 -1.8
1,745,339 - MIT1002_01585 0.73 -1.0
1,745,340 - MIT1002_01585 0.73 -2.2
1,745,340 - MIT1002_01585 0.73 -0.8
1,745,485 + MIT1002_01585 0.80 -3.5
1,745,485 + MIT1002_01585 0.80 +0.7
1,745,485 + MIT1002_01585 0.80 +0.1
1,745,485 + MIT1002_01585 0.80 -0.4
1,745,485 + MIT1002_01585 0.80 -0.3
1,745,485 + MIT1002_01585 0.80 -0.7
1,745,485 + MIT1002_01585 0.80 -1.3
1,745,493 - MIT1002_01585 0.80 +1.1
1,745,493 - MIT1002_01585 0.80 +1.3
1,745,493 - MIT1002_01585 0.80 +0.9
1,745,493 - MIT1002_01585 0.80 -1.5
1,745,493 - MIT1002_01585 0.80 -1.2
1,745,493 - MIT1002_01585 0.80 -1.8
1,745,495 + MIT1002_01585 0.80 -1.0
1,745,746 - +0.0
1,745,844 + +1.3
1,745,844 - +1.1
1,745,850 - -0.4
1,745,867 + -0.4
1,745,891 - +0.3
1,745,891 - -0.1
1,745,897 - +0.6
1,745,913 + +0.0
1,745,962 - +0.2
1,745,965 - -0.1
1,746,030 - MIT1002_01586 0.11 -0.2
1,746,059 + MIT1002_01586 0.14 +1.0
1,746,127 + MIT1002_01586 0.20 -1.8
1,746,127 + MIT1002_01586 0.20 -0.3
1,746,132 + MIT1002_01586 0.20 +0.6
1,746,145 + MIT1002_01586 0.21 +1.3
1,746,290 + MIT1002_01586 0.34 -3.6
1,746,342 - MIT1002_01586 0.39 -1.2
1,746,344 + MIT1002_01586 0.39 +0.3
1,746,414 + MIT1002_01586 0.45 +1.0
1,746,422 - MIT1002_01586 0.46 -0.7
1,746,422 - MIT1002_01586 0.46 +0.3
1,746,426 + MIT1002_01586 0.46 +0.0
1,746,434 - MIT1002_01586 0.47 +0.7
1,746,610 - MIT1002_01586 0.62 -2.5
1,746,673 + MIT1002_01586 0.68 -0.1
1,746,681 - MIT1002_01586 0.68 +0.2
1,746,745 - MIT1002_01586 0.74 +0.5
1,746,758 + MIT1002_01586 0.75 -0.1
1,746,791 - MIT1002_01586 0.78 -1.7
1,746,799 - MIT1002_01586 0.79 +0.3

Or see this region's nucleotide sequence