Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00842 and MIT1002_00843 are separated by 82 nucleotides MIT1002_00843 and MIT1002_00844 are separated by 255 nucleotides MIT1002_00844 and MIT1002_00845 are separated by 330 nucleotides
MIT1002_00842: MIT1002_00842 - Periplasmic pH-dependent serine endoprotease DegQ precursor, at 922,826 to 924,193
_00842
MIT1002_00843: MIT1002_00843 - hypothetical protein, at 924,276 to 924,710
_00843
MIT1002_00844: MIT1002_00844 - AFG1-like ATPase, at 924,966 to 926,063
_00844
MIT1002_00845: MIT1002_00845 - putative transcriptional regulatory protein YeeN, at 926,394 to 927,116
_00845
Position (kb) 924
925
926
927 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 923.988 kb on + strand, within MIT1002_00842 at 923.988 kb on + strand, within MIT1002_00842 at 923.998 kb on + strand, within MIT1002_00842 at 923.998 kb on + strand, within MIT1002_00842 at 923.998 kb on + strand, within MIT1002_00842 at 923.998 kb on + strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.006 kb on - strand, within MIT1002_00842 at 924.064 kb on + strand at 924.135 kb on - strand at 924.238 kb on + strand at 924.248 kb on + strand at 924.374 kb on - strand, within MIT1002_00843 at 924.381 kb on - strand, within MIT1002_00843 at 924.452 kb on + strand, within MIT1002_00843 at 924.460 kb on - strand, within MIT1002_00843 at 924.530 kb on + strand, within MIT1002_00843 at 924.530 kb on + strand, within MIT1002_00843 at 924.538 kb on - strand, within MIT1002_00843 at 924.539 kb on - strand, within MIT1002_00843 at 924.564 kb on - strand, within MIT1002_00843 at 924.608 kb on + strand, within MIT1002_00843 at 924.608 kb on + strand, within MIT1002_00843 at 924.608 kb on + strand, within MIT1002_00843 at 924.613 kb on + strand, within MIT1002_00843 at 924.627 kb on + strand, within MIT1002_00843 at 924.694 kb on + strand at 924.727 kb on + strand at 924.812 kb on - strand at 924.899 kb on - strand at 924.915 kb on + strand at 925.002 kb on - strand at 925.087 kb on - strand, within MIT1002_00844 at 925.150 kb on - strand, within MIT1002_00844 at 925.152 kb on - strand, within MIT1002_00844 at 925.157 kb on - strand, within MIT1002_00844 at 925.217 kb on + strand, within MIT1002_00844 at 925.281 kb on + strand, within MIT1002_00844 at 925.446 kb on - strand, within MIT1002_00844 at 925.508 kb on + strand, within MIT1002_00844 at 925.508 kb on + strand, within MIT1002_00844 at 925.508 kb on + strand, within MIT1002_00844 at 925.508 kb on + strand, within MIT1002_00844 at 925.508 kb on + strand, within MIT1002_00844 at 925.516 kb on - strand, within MIT1002_00844 at 925.688 kb on - strand, within MIT1002_00844 at 925.697 kb on - strand, within MIT1002_00844 at 925.809 kb on - strand, within MIT1002_00844 at 925.814 kb on - strand, within MIT1002_00844 at 925.870 kb on - strand, within MIT1002_00844 at 925.929 kb on - strand, within MIT1002_00844 at 925.966 kb on + strand at 925.979 kb on + strand at 925.979 kb on + strand at 926.002 kb on + strand at 926.002 kb on + strand at 926.010 kb on - strand at 926.010 kb on - strand at 926.121 kb on + strand at 926.122 kb on - strand at 926.223 kb on + strand at 926.296 kb on + strand at 926.339 kb on - strand at 926.437 kb on - strand at 926.619 kb on + strand, within MIT1002_00845 at 926.627 kb on + strand, within MIT1002_00845 at 926.657 kb on - strand, within MIT1002_00845 at 926.658 kb on - strand, within MIT1002_00845 at 926.713 kb on + strand, within MIT1002_00845 at 926.744 kb on - strand, within MIT1002_00845 at 926.773 kb on - strand, within MIT1002_00845 at 926.896 kb on - strand, within MIT1002_00845 at 926.930 kb on + strand, within MIT1002_00845 at 926.930 kb on + strand, within MIT1002_00845 at 926.945 kb on + strand, within MIT1002_00845 at 926.953 kb on - strand, within MIT1002_00845 at 926.953 kb on - strand, within MIT1002_00845
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3 remove 923,988 + MIT1002_00842 0.85 -0.5 923,988 + MIT1002_00842 0.85 -1.8 923,998 + MIT1002_00842 0.86 +0.0 923,998 + MIT1002_00842 0.86 +0.0 923,998 + MIT1002_00842 0.86 +0.8 923,998 + MIT1002_00842 0.86 +1.2 924,006 - MIT1002_00842 0.86 -1.0 924,006 - MIT1002_00842 0.86 -0.7 924,006 - MIT1002_00842 0.86 +0.7 924,006 - MIT1002_00842 0.86 +0.6 924,006 - MIT1002_00842 0.86 -1.3 924,006 - MIT1002_00842 0.86 -0.9 924,006 - MIT1002_00842 0.86 -0.3 924,064 + -0.5 924,135 - -3.1 924,238 + -1.7 924,248 + -0.7 924,374 - MIT1002_00843 0.23 -4.3 924,381 - MIT1002_00843 0.24 -4.5 924,452 + MIT1002_00843 0.40 -4.8 924,460 - MIT1002_00843 0.42 -0.8 924,530 + MIT1002_00843 0.58 -2.4 924,530 + MIT1002_00843 0.58 -3.6 924,538 - MIT1002_00843 0.60 -3.3 924,539 - MIT1002_00843 0.60 -4.1 924,564 - MIT1002_00843 0.66 -2.6 924,608 + MIT1002_00843 0.76 -0.8 924,608 + MIT1002_00843 0.76 -4.3 924,608 + MIT1002_00843 0.76 -5.6 924,613 + MIT1002_00843 0.77 -1.8 924,627 + MIT1002_00843 0.81 -3.2 924,694 + -1.5 924,727 + -2.3 924,812 - -1.0 924,899 - -0.0 924,915 + +0.3 925,002 - -2.2 925,087 - MIT1002_00844 0.11 -3.0 925,150 - MIT1002_00844 0.17 -3.6 925,152 - MIT1002_00844 0.17 +0.3 925,157 - MIT1002_00844 0.17 -2.1 925,217 + MIT1002_00844 0.23 -1.5 925,281 + MIT1002_00844 0.29 -2.6 925,446 - MIT1002_00844 0.44 -1.7 925,508 + MIT1002_00844 0.49 -2.0 925,508 + MIT1002_00844 0.49 -1.1 925,508 + MIT1002_00844 0.49 -1.3 925,508 + MIT1002_00844 0.49 -1.9 925,508 + MIT1002_00844 0.49 -3.0 925,516 - MIT1002_00844 0.50 -2.9 925,688 - MIT1002_00844 0.66 -2.0 925,697 - MIT1002_00844 0.67 -1.0 925,809 - MIT1002_00844 0.77 -1.9 925,814 - MIT1002_00844 0.77 -3.1 925,870 - MIT1002_00844 0.82 -2.7 925,929 - MIT1002_00844 0.88 -1.3 925,966 + -4.3 925,979 + -1.8 925,979 + -3.1 926,002 + -1.2 926,002 + -1.8 926,010 - -1.7 926,010 - -1.1 926,121 + -0.4 926,122 - +0.3 926,223 + +0.3 926,296 + -0.3 926,339 - -0.7 926,437 - +1.0 926,619 + MIT1002_00845 0.31 +0.3 926,627 + MIT1002_00845 0.32 -1.7 926,657 - MIT1002_00845 0.36 -2.5 926,658 - MIT1002_00845 0.37 -0.7 926,713 + MIT1002_00845 0.44 -0.5 926,744 - MIT1002_00845 0.48 +1.5 926,773 - MIT1002_00845 0.52 -2.8 926,896 - MIT1002_00845 0.69 -0.4 926,930 + MIT1002_00845 0.74 +0.6 926,930 + MIT1002_00845 0.74 -2.8 926,945 + MIT1002_00845 0.76 -1.7 926,953 - MIT1002_00845 0.77 -1.3 926,953 - MIT1002_00845 0.77 -0.5
Or see this region's nucleotide sequence