Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00642 and MIT1002_00643 are separated by 133 nucleotides MIT1002_00643 and MIT1002_00644 are separated by 172 nucleotides MIT1002_00644 and MIT1002_00645 are separated by 76 nucleotides
MIT1002_00642: MIT1002_00642 - Sensor protein BasS, at 696,459 to 697,808
_00642
MIT1002_00643: MIT1002_00643 - SH3 domain-containing protein, at 697,942 to 698,544
_00643
MIT1002_00644: MIT1002_00644 - hypothetical protein, at 698,717 to 700,222
_00644
MIT1002_00645: MIT1002_00645 - hypothetical protein, at 700,299 to 701,378
_00645
Position (kb) 698
699
700
701 Strain fitness (log2 ratio) -2
-1
0
1
2 at 697.721 kb on + strand at 697.780 kb on + strand at 697.781 kb on + strand at 697.788 kb on - strand at 697.789 kb on - strand at 697.806 kb on - strand at 697.824 kb on + strand at 697.831 kb on + strand at 697.833 kb on - strand at 697.848 kb on + strand at 697.848 kb on + strand at 697.856 kb on - strand at 697.856 kb on - strand at 697.856 kb on - strand at 697.856 kb on - strand at 697.939 kb on + strand at 697.944 kb on + strand at 697.987 kb on - strand at 698.034 kb on + strand, within MIT1002_00643 at 698.112 kb on - strand, within MIT1002_00643 at 698.231 kb on + strand, within MIT1002_00643 at 698.264 kb on + strand, within MIT1002_00643 at 698.264 kb on + strand, within MIT1002_00643 at 698.264 kb on + strand, within MIT1002_00643 at 698.269 kb on - strand, within MIT1002_00643 at 698.281 kb on + strand, within MIT1002_00643 at 698.357 kb on + strand, within MIT1002_00643 at 698.381 kb on - strand, within MIT1002_00643 at 698.398 kb on + strand, within MIT1002_00643 at 698.408 kb on + strand, within MIT1002_00643 at 698.416 kb on - strand, within MIT1002_00643 at 698.416 kb on - strand, within MIT1002_00643 at 698.420 kb on - strand, within MIT1002_00643 at 698.601 kb on + strand at 698.678 kb on + strand at 698.686 kb on - strand at 698.686 kb on - strand at 698.686 kb on - strand at 698.694 kb on + strand at 698.699 kb on + strand at 698.805 kb on + strand at 698.807 kb on + strand at 698.812 kb on + strand at 698.812 kb on + strand at 698.812 kb on + strand at 698.812 kb on + strand at 698.820 kb on - strand at 698.820 kb on - strand at 698.820 kb on - strand at 698.850 kb on + strand at 698.864 kb on - strand at 698.938 kb on + strand, within MIT1002_00644 at 698.955 kb on + strand, within MIT1002_00644 at 698.955 kb on + strand, within MIT1002_00644 at 698.955 kb on + strand, within MIT1002_00644 at 698.968 kb on - strand, within MIT1002_00644 at 699.015 kb on - strand, within MIT1002_00644 at 699.030 kb on - strand, within MIT1002_00644 at 699.088 kb on + strand, within MIT1002_00644 at 699.121 kb on + strand, within MIT1002_00644 at 699.152 kb on + strand, within MIT1002_00644 at 699.187 kb on - strand, within MIT1002_00644 at 699.204 kb on + strand, within MIT1002_00644 at 699.249 kb on + strand, within MIT1002_00644 at 699.279 kb on + strand, within MIT1002_00644 at 699.285 kb on + strand, within MIT1002_00644 at 699.294 kb on - strand, within MIT1002_00644 at 699.294 kb on - strand, within MIT1002_00644 at 699.294 kb on - strand, within MIT1002_00644 at 699.382 kb on - strand, within MIT1002_00644 at 699.409 kb on - strand, within MIT1002_00644 at 699.416 kb on + strand, within MIT1002_00644 at 699.433 kb on - strand, within MIT1002_00644 at 699.458 kb on - strand, within MIT1002_00644 at 699.495 kb on - strand, within MIT1002_00644 at 699.495 kb on - strand, within MIT1002_00644 at 699.525 kb on + strand, within MIT1002_00644 at 699.555 kb on + strand, within MIT1002_00644 at 699.555 kb on + strand, within MIT1002_00644 at 699.555 kb on + strand, within MIT1002_00644 at 699.555 kb on + strand, within MIT1002_00644 at 699.555 kb on + strand, within MIT1002_00644 at 699.563 kb on - strand, within MIT1002_00644 at 699.596 kb on + strand, within MIT1002_00644 at 699.620 kb on - strand, within MIT1002_00644 at 699.692 kb on + strand, within MIT1002_00644 at 699.720 kb on - strand, within MIT1002_00644 at 699.743 kb on - strand, within MIT1002_00644 at 699.778 kb on + strand, within MIT1002_00644 at 699.792 kb on + strand, within MIT1002_00644 at 699.792 kb on + strand, within MIT1002_00644 at 699.816 kb on - strand, within MIT1002_00644 at 699.906 kb on + strand, within MIT1002_00644 at 699.979 kb on - strand, within MIT1002_00644 at 700.038 kb on + strand, within MIT1002_00644 at 700.046 kb on - strand, within MIT1002_00644 at 700.083 kb on + strand at 700.154 kb on - strand at 700.188 kb on + strand at 700.196 kb on + strand at 700.261 kb on + strand at 700.268 kb on - strand at 700.285 kb on + strand at 700.400 kb on + strand at 700.414 kb on - strand, within MIT1002_00645 at 700.424 kb on + strand, within MIT1002_00645 at 700.424 kb on + strand, within MIT1002_00645 at 700.429 kb on + strand, within MIT1002_00645 at 700.443 kb on - strand, within MIT1002_00645 at 700.468 kb on + strand, within MIT1002_00645 at 700.479 kb on - strand, within MIT1002_00645 at 700.484 kb on - strand, within MIT1002_00645 at 700.484 kb on - strand, within MIT1002_00645 at 700.488 kb on + strand, within MIT1002_00645 at 700.551 kb on - strand, within MIT1002_00645 at 700.597 kb on - strand, within MIT1002_00645 at 700.688 kb on + strand, within MIT1002_00645 at 700.705 kb on - strand, within MIT1002_00645 at 700.705 kb on - strand, within MIT1002_00645 at 700.732 kb on + strand, within MIT1002_00645 at 700.745 kb on + strand, within MIT1002_00645 at 700.750 kb on + strand, within MIT1002_00645 at 700.753 kb on - strand, within MIT1002_00645 at 700.790 kb on + strand, within MIT1002_00645 at 700.798 kb on - strand, within MIT1002_00645 at 700.803 kb on - strand, within MIT1002_00645 at 700.854 kb on - strand, within MIT1002_00645 at 700.856 kb on - strand, within MIT1002_00645 at 700.880 kb on - strand, within MIT1002_00645 at 700.931 kb on - strand, within MIT1002_00645 at 700.993 kb on + strand, within MIT1002_00645 at 701.050 kb on + strand, within MIT1002_00645 at 701.050 kb on + strand, within MIT1002_00645 at 701.058 kb on - strand, within MIT1002_00645 at 701.094 kb on + strand, within MIT1002_00645 at 701.096 kb on + strand, within MIT1002_00645 at 701.139 kb on - strand, within MIT1002_00645 at 701.139 kb on - strand, within MIT1002_00645 at 701.139 kb on - strand, within MIT1002_00645 at 701.145 kb on - strand, within MIT1002_00645
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3 remove 697,721 + +1.0 697,780 + +0.5 697,781 + -0.9 697,788 - +0.9 697,789 - -0.2 697,806 - +1.5 697,824 + +0.3 697,831 + +0.6 697,833 - +1.1 697,848 + -1.6 697,848 + +0.9 697,856 - +0.1 697,856 - +2.1 697,856 - -0.0 697,856 - +0.8 697,939 + +1.3 697,944 + -1.2 697,987 - +0.0 698,034 + MIT1002_00643 0.15 +0.2 698,112 - MIT1002_00643 0.28 -1.2 698,231 + MIT1002_00643 0.48 -0.5 698,264 + MIT1002_00643 0.53 +0.2 698,264 + MIT1002_00643 0.53 -0.5 698,264 + MIT1002_00643 0.53 +0.2 698,269 - MIT1002_00643 0.54 -2.1 698,281 + MIT1002_00643 0.56 -2.7 698,357 + MIT1002_00643 0.69 -0.7 698,381 - MIT1002_00643 0.73 -0.4 698,398 + MIT1002_00643 0.76 -2.6 698,408 + MIT1002_00643 0.77 -0.3 698,416 - MIT1002_00643 0.79 -0.8 698,416 - MIT1002_00643 0.79 -1.5 698,420 - MIT1002_00643 0.79 -1.5 698,601 + +0.3 698,678 + +0.1 698,686 - +0.4 698,686 - +1.5 698,686 - -0.0 698,694 + -2.4 698,699 + +1.1 698,805 + -1.3 698,807 + -0.2 698,812 + -0.1 698,812 + +1.3 698,812 + -1.1 698,812 + -0.7 698,820 - -1.0 698,820 - +0.1 698,820 - +0.2 698,850 + +1.1 698,864 - +0.8 698,938 + MIT1002_00644 0.15 +0.3 698,955 + MIT1002_00644 0.16 -0.7 698,955 + MIT1002_00644 0.16 +1.1 698,955 + MIT1002_00644 0.16 +0.1 698,968 - MIT1002_00644 0.17 +0.1 699,015 - MIT1002_00644 0.20 -2.4 699,030 - MIT1002_00644 0.21 -0.4 699,088 + MIT1002_00644 0.25 +0.1 699,121 + MIT1002_00644 0.27 -1.7 699,152 + MIT1002_00644 0.29 -0.4 699,187 - MIT1002_00644 0.31 +0.3 699,204 + MIT1002_00644 0.32 +0.6 699,249 + MIT1002_00644 0.35 -0.8 699,279 + MIT1002_00644 0.37 -1.3 699,285 + MIT1002_00644 0.38 -0.1 699,294 - MIT1002_00644 0.38 -1.8 699,294 - MIT1002_00644 0.38 +1.1 699,294 - MIT1002_00644 0.38 -0.6 699,382 - MIT1002_00644 0.44 -0.7 699,409 - MIT1002_00644 0.46 +1.4 699,416 + MIT1002_00644 0.46 -2.1 699,433 - MIT1002_00644 0.48 +0.3 699,458 - MIT1002_00644 0.49 -0.1 699,495 - MIT1002_00644 0.52 -0.2 699,495 - MIT1002_00644 0.52 -0.8 699,525 + MIT1002_00644 0.54 -0.5 699,555 + MIT1002_00644 0.56 +0.1 699,555 + MIT1002_00644 0.56 -0.5 699,555 + MIT1002_00644 0.56 +1.0 699,555 + MIT1002_00644 0.56 -0.2 699,555 + MIT1002_00644 0.56 -0.1 699,563 - MIT1002_00644 0.56 -1.1 699,596 + MIT1002_00644 0.58 -1.1 699,620 - MIT1002_00644 0.60 +0.8 699,692 + MIT1002_00644 0.65 -1.0 699,720 - MIT1002_00644 0.67 +0.5 699,743 - MIT1002_00644 0.68 +0.5 699,778 + MIT1002_00644 0.70 +0.0 699,792 + MIT1002_00644 0.71 -2.2 699,792 + MIT1002_00644 0.71 -0.8 699,816 - MIT1002_00644 0.73 -0.8 699,906 + MIT1002_00644 0.79 -0.7 699,979 - MIT1002_00644 0.84 +0.2 700,038 + MIT1002_00644 0.88 +0.4 700,046 - MIT1002_00644 0.88 +0.2 700,083 + +0.2 700,154 - +1.2 700,188 + +1.1 700,196 + +0.4 700,261 + +1.0 700,268 - -0.3 700,285 + -0.7 700,400 + +1.7 700,414 - MIT1002_00645 0.11 -0.0 700,424 + MIT1002_00645 0.12 +2.2 700,424 + MIT1002_00645 0.12 +0.4 700,429 + MIT1002_00645 0.12 +1.8 700,443 - MIT1002_00645 0.13 -0.8 700,468 + MIT1002_00645 0.16 +0.1 700,479 - MIT1002_00645 0.17 +0.3 700,484 - MIT1002_00645 0.17 -0.2 700,484 - MIT1002_00645 0.17 -0.6 700,488 + MIT1002_00645 0.17 -0.2 700,551 - MIT1002_00645 0.23 -0.2 700,597 - MIT1002_00645 0.28 -0.5 700,688 + MIT1002_00645 0.36 -0.1 700,705 - MIT1002_00645 0.38 -0.9 700,705 - MIT1002_00645 0.38 +0.4 700,732 + MIT1002_00645 0.40 -1.1 700,745 + MIT1002_00645 0.41 +0.2 700,750 + MIT1002_00645 0.42 +0.2 700,753 - MIT1002_00645 0.42 -0.8 700,790 + MIT1002_00645 0.45 +0.3 700,798 - MIT1002_00645 0.46 -0.2 700,803 - MIT1002_00645 0.47 +0.4 700,854 - MIT1002_00645 0.51 +0.6 700,856 - MIT1002_00645 0.52 +0.6 700,880 - MIT1002_00645 0.54 +0.2 700,931 - MIT1002_00645 0.59 +2.2 700,993 + MIT1002_00645 0.64 +1.4 701,050 + MIT1002_00645 0.70 +0.6 701,050 + MIT1002_00645 0.70 +0.8 701,058 - MIT1002_00645 0.70 +0.0 701,094 + MIT1002_00645 0.74 +0.7 701,096 + MIT1002_00645 0.74 +0.9 701,139 - MIT1002_00645 0.78 -0.0 701,139 - MIT1002_00645 0.78 -0.9 701,139 - MIT1002_00645 0.78 +0.1 701,145 - MIT1002_00645 0.78 +0.1
Or see this region's nucleotide sequence