Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00626 and MIT1002_00627 are separated by 1 nucleotides MIT1002_00627 and MIT1002_00628 overlap by 4 nucleotides MIT1002_00628 and MIT1002_00629 are separated by 80 nucleotides
MIT1002_00626: MIT1002_00626 - Murein hydrolase activator NlpD precursor, at 674,895 to 675,764
_00626
MIT1002_00627: MIT1002_00627 - Inner membrane protein YqaA, at 675,766 to 676,344
_00627
MIT1002_00628: MIT1002_00628 - Protein-L-isoaspartate O-methyltransferase, at 676,341 to 676,976
_00628
MIT1002_00629: MIT1002_00629 - tRNA pseudouridine synthase D, at 677,057 to 678,142
_00629
Position (kb) 676
677 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 675.450 kb on - strand, within MIT1002_00626 at 675.450 kb on - strand, within MIT1002_00626 at 675.584 kb on - strand, within MIT1002_00626 at 675.586 kb on + strand, within MIT1002_00626 at 675.600 kb on + strand, within MIT1002_00626 at 675.754 kb on + strand at 675.830 kb on - strand, within MIT1002_00627 at 675.832 kb on - strand, within MIT1002_00627 at 676.029 kb on + strand, within MIT1002_00627 at 676.029 kb on + strand, within MIT1002_00627 at 676.314 kb on - strand at 676.314 kb on - strand at 676.352 kb on - strand at 676.502 kb on + strand, within MIT1002_00628 at 676.655 kb on + strand, within MIT1002_00628 at 676.655 kb on + strand, within MIT1002_00628 at 676.663 kb on - strand, within MIT1002_00628 at 676.701 kb on + strand, within MIT1002_00628 at 676.715 kb on - strand, within MIT1002_00628 at 676.794 kb on - strand, within MIT1002_00628 at 676.809 kb on + strand, within MIT1002_00628 at 676.809 kb on + strand, within MIT1002_00628 at 676.817 kb on - strand, within MIT1002_00628 at 676.817 kb on - strand, within MIT1002_00628 at 676.817 kb on - strand, within MIT1002_00628 at 676.817 kb on - strand, within MIT1002_00628 at 676.843 kb on + strand, within MIT1002_00628 at 676.899 kb on + strand, within MIT1002_00628 at 677.019 kb on + strand at 677.055 kb on + strand at 677.062 kb on - strand at 677.095 kb on + strand at 677.157 kb on + strand at 677.204 kb on + strand, within MIT1002_00629 at 677.204 kb on + strand, within MIT1002_00629 at 677.220 kb on - strand, within MIT1002_00629 at 677.267 kb on + strand, within MIT1002_00629 at 677.280 kb on + strand, within MIT1002_00629 at 677.286 kb on + strand, within MIT1002_00629 at 677.318 kb on - strand, within MIT1002_00629 at 677.334 kb on + strand, within MIT1002_00629 at 677.334 kb on - strand, within MIT1002_00629 at 677.336 kb on - strand, within MIT1002_00629 at 677.344 kb on - strand, within MIT1002_00629 at 677.380 kb on + strand, within MIT1002_00629 at 677.380 kb on + strand, within MIT1002_00629 at 677.380 kb on + strand, within MIT1002_00629 at 677.388 kb on - strand, within MIT1002_00629 at 677.388 kb on - strand, within MIT1002_00629 at 677.388 kb on - strand, within MIT1002_00629 at 677.388 kb on - strand, within MIT1002_00629 at 677.551 kb on + strand, within MIT1002_00629 at 677.551 kb on + strand, within MIT1002_00629 at 677.559 kb on - strand, within MIT1002_00629 at 677.559 kb on - strand, within MIT1002_00629 at 677.559 kb on - strand, within MIT1002_00629 at 677.559 kb on - strand, within MIT1002_00629 at 677.583 kb on + strand, within MIT1002_00629 at 677.603 kb on + strand, within MIT1002_00629 at 677.608 kb on + strand, within MIT1002_00629 at 677.611 kb on - strand, within MIT1002_00629 at 677.616 kb on - strand, within MIT1002_00629 at 677.709 kb on - strand, within MIT1002_00629 at 677.754 kb on + strand, within MIT1002_00629 at 677.754 kb on + strand, within MIT1002_00629 at 677.754 kb on + strand, within MIT1002_00629 at 677.754 kb on + strand, within MIT1002_00629 at 677.762 kb on - strand, within MIT1002_00629 at 677.762 kb on - strand, within MIT1002_00629 at 677.806 kb on + strand, within MIT1002_00629 at 677.806 kb on + strand, within MIT1002_00629 at 677.814 kb on - strand, within MIT1002_00629 at 677.821 kb on + strand, within MIT1002_00629 at 677.849 kb on - strand, within MIT1002_00629 at 677.855 kb on - strand, within MIT1002_00629 at 677.855 kb on - strand, within MIT1002_00629 at 677.881 kb on - strand, within MIT1002_00629 at 677.973 kb on + strand, within MIT1002_00629
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3 remove 675,450 - MIT1002_00626 0.64 -0.7 675,450 - MIT1002_00626 0.64 +0.8 675,584 - MIT1002_00626 0.79 -0.4 675,586 + MIT1002_00626 0.79 -1.5 675,600 + MIT1002_00626 0.81 +0.8 675,754 + +0.2 675,830 - MIT1002_00627 0.11 -1.9 675,832 - MIT1002_00627 0.11 +0.8 676,029 + MIT1002_00627 0.45 +1.4 676,029 + MIT1002_00627 0.45 +0.5 676,314 - +2.3 676,314 - -2.4 676,352 - -0.5 676,502 + MIT1002_00628 0.25 -2.0 676,655 + MIT1002_00628 0.49 -0.7 676,655 + MIT1002_00628 0.49 -1.3 676,663 - MIT1002_00628 0.51 -1.1 676,701 + MIT1002_00628 0.57 +0.9 676,715 - MIT1002_00628 0.59 -0.0 676,794 - MIT1002_00628 0.71 -1.0 676,809 + MIT1002_00628 0.74 +0.5 676,809 + MIT1002_00628 0.74 -0.4 676,817 - MIT1002_00628 0.75 -1.5 676,817 - MIT1002_00628 0.75 -0.1 676,817 - MIT1002_00628 0.75 -2.5 676,817 - MIT1002_00628 0.75 +0.2 676,843 + MIT1002_00628 0.79 -0.1 676,899 + MIT1002_00628 0.88 +0.4 677,019 + -0.6 677,055 + -0.6 677,062 - +0.2 677,095 + +0.2 677,157 + +0.0 677,204 + MIT1002_00629 0.14 -1.0 677,204 + MIT1002_00629 0.14 +2.1 677,220 - MIT1002_00629 0.15 +1.2 677,267 + MIT1002_00629 0.19 -1.3 677,280 + MIT1002_00629 0.21 -0.9 677,286 + MIT1002_00629 0.21 -1.3 677,318 - MIT1002_00629 0.24 -0.9 677,334 + MIT1002_00629 0.26 -0.4 677,334 - MIT1002_00629 0.26 -1.1 677,336 - MIT1002_00629 0.26 +1.8 677,344 - MIT1002_00629 0.26 +0.2 677,380 + MIT1002_00629 0.30 +0.6 677,380 + MIT1002_00629 0.30 -0.8 677,380 + MIT1002_00629 0.30 -1.3 677,388 - MIT1002_00629 0.30 -0.4 677,388 - MIT1002_00629 0.30 -0.7 677,388 - MIT1002_00629 0.30 +0.2 677,388 - MIT1002_00629 0.30 +0.0 677,551 + MIT1002_00629 0.45 -2.9 677,551 + MIT1002_00629 0.45 +0.5 677,559 - MIT1002_00629 0.46 +0.8 677,559 - MIT1002_00629 0.46 +1.4 677,559 - MIT1002_00629 0.46 +0.5 677,559 - MIT1002_00629 0.46 +0.0 677,583 + MIT1002_00629 0.48 +0.9 677,603 + MIT1002_00629 0.50 +0.2 677,608 + MIT1002_00629 0.51 -0.6 677,611 - MIT1002_00629 0.51 +0.4 677,616 - MIT1002_00629 0.51 +0.2 677,709 - MIT1002_00629 0.60 +0.0 677,754 + MIT1002_00629 0.64 +0.2 677,754 + MIT1002_00629 0.64 -0.4 677,754 + MIT1002_00629 0.64 -0.4 677,754 + MIT1002_00629 0.64 -2.1 677,762 - MIT1002_00629 0.65 -0.4 677,762 - MIT1002_00629 0.65 +0.4 677,806 + MIT1002_00629 0.69 +0.1 677,806 + MIT1002_00629 0.69 +0.6 677,814 - MIT1002_00629 0.70 +0.7 677,821 + MIT1002_00629 0.70 +1.0 677,849 - MIT1002_00629 0.73 +1.5 677,855 - MIT1002_00629 0.73 -0.7 677,855 - MIT1002_00629 0.73 +0.3 677,881 - MIT1002_00629 0.76 +0.9 677,973 + MIT1002_00629 0.84 -0.0
Or see this region's nucleotide sequence