Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00530

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00529 and MIT1002_00530 are separated by 153 nucleotidesMIT1002_00530 and MIT1002_00531 are separated by 264 nucleotides MIT1002_00529: MIT1002_00529 - Thioredoxin, at 575,905 to 576,774 _00529 MIT1002_00530: MIT1002_00530 - hypothetical protein, at 576,928 to 577,356 _00530 MIT1002_00531: MIT1002_00531 - cysteine desulfurase, SufS family, at 577,621 to 578,799 _00531 Position (kb) 576 577 578Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 575.975 kb on + strandat 576.026 kb on + strand, within MIT1002_00529at 576.094 kb on + strand, within MIT1002_00529at 576.107 kb on - strand, within MIT1002_00529at 576.172 kb on - strand, within MIT1002_00529at 576.193 kb on + strand, within MIT1002_00529at 576.201 kb on - strand, within MIT1002_00529at 576.309 kb on - strand, within MIT1002_00529at 576.344 kb on + strand, within MIT1002_00529at 576.351 kb on + strand, within MIT1002_00529at 576.358 kb on - strand, within MIT1002_00529at 576.408 kb on - strand, within MIT1002_00529at 576.457 kb on + strand, within MIT1002_00529at 576.469 kb on + strand, within MIT1002_00529at 576.537 kb on + strand, within MIT1002_00529at 576.627 kb on - strand, within MIT1002_00529at 576.639 kb on + strand, within MIT1002_00529at 576.688 kb on - strandat 576.714 kb on + strandat 576.804 kb on + strandat 576.900 kb on - strandat 576.910 kb on - strandat 577.038 kb on + strand, within MIT1002_00530at 577.038 kb on + strand, within MIT1002_00530at 577.069 kb on - strand, within MIT1002_00530at 577.070 kb on + strand, within MIT1002_00530at 577.079 kb on - strand, within MIT1002_00530at 577.079 kb on - strand, within MIT1002_00530at 577.085 kb on - strand, within MIT1002_00530at 577.139 kb on - strand, within MIT1002_00530at 577.161 kb on - strand, within MIT1002_00530at 577.166 kb on + strand, within MIT1002_00530at 577.166 kb on + strand, within MIT1002_00530at 577.174 kb on - strand, within MIT1002_00530at 577.174 kb on - strand, within MIT1002_00530at 577.174 kb on - strand, within MIT1002_00530at 577.195 kb on + strand, within MIT1002_00530at 577.200 kb on + strand, within MIT1002_00530at 577.203 kb on - strand, within MIT1002_00530at 577.203 kb on - strand, within MIT1002_00530at 577.203 kb on - strand, within MIT1002_00530at 577.205 kb on + strand, within MIT1002_00530at 577.205 kb on + strand, within MIT1002_00530at 577.205 kb on + strand, within MIT1002_00530at 577.212 kb on + strand, within MIT1002_00530at 577.289 kb on + strand, within MIT1002_00530at 577.297 kb on + strand, within MIT1002_00530at 577.297 kb on + strand, within MIT1002_00530at 577.307 kb on - strand, within MIT1002_00530at 577.379 kb on + strandat 577.429 kb on + strandat 577.429 kb on + strandat 577.437 kb on - strandat 577.437 kb on - strandat 577.442 kb on - strandat 577.442 kb on - strandat 577.444 kb on - strandat 577.588 kb on + strandat 577.588 kb on + strandat 577.588 kb on + strandat 577.596 kb on - strandat 577.710 kb on + strandat 577.810 kb on - strand, within MIT1002_00531at 577.825 kb on + strand, within MIT1002_00531at 577.830 kb on + strand, within MIT1002_00531at 577.910 kb on + strand, within MIT1002_00531at 577.928 kb on - strand, within MIT1002_00531at 578.162 kb on + strand, within MIT1002_00531at 578.189 kb on + strand, within MIT1002_00531at 578.195 kb on + strand, within MIT1002_00531at 578.215 kb on + strand, within MIT1002_00531at 578.286 kb on - strand, within MIT1002_00531at 578.299 kb on - strand, within MIT1002_00531at 578.305 kb on + strand, within MIT1002_00531at 578.305 kb on + strand, within MIT1002_00531at 578.305 kb on + strand, within MIT1002_00531at 578.313 kb on - strand, within MIT1002_00531at 578.313 kb on - strand, within MIT1002_00531at 578.313 kb on - strand, within MIT1002_00531at 578.313 kb on - strand, within MIT1002_00531at 578.313 kb on - strand, within MIT1002_00531at 578.327 kb on - strand, within MIT1002_00531at 578.342 kb on + strand, within MIT1002_00531at 578.342 kb on + strand, within MIT1002_00531at 578.350 kb on - strand, within MIT1002_00531

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
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575,975 + +0.2
576,026 + MIT1002_00529 0.14 -1.1
576,094 + MIT1002_00529 0.22 -0.1
576,107 - MIT1002_00529 0.23 +0.1
576,172 - MIT1002_00529 0.31 -0.6
576,193 + MIT1002_00529 0.33 +0.2
576,201 - MIT1002_00529 0.34 +1.3
576,309 - MIT1002_00529 0.46 +1.2
576,344 + MIT1002_00529 0.50 +0.5
576,351 + MIT1002_00529 0.51 -1.1
576,358 - MIT1002_00529 0.52 +1.9
576,408 - MIT1002_00529 0.58 +0.5
576,457 + MIT1002_00529 0.63 -0.1
576,469 + MIT1002_00529 0.65 +0.0
576,537 + MIT1002_00529 0.73 +0.9
576,627 - MIT1002_00529 0.83 +0.1
576,639 + MIT1002_00529 0.84 +0.8
576,688 - +0.1
576,714 + +1.1
576,804 + -0.5
576,900 - +1.0
576,910 - +1.5
577,038 + MIT1002_00530 0.26 -1.3
577,038 + MIT1002_00530 0.26 +0.7
577,069 - MIT1002_00530 0.33 -0.3
577,070 + MIT1002_00530 0.33 -0.3
577,079 - MIT1002_00530 0.35 +0.2
577,079 - MIT1002_00530 0.35 -0.2
577,085 - MIT1002_00530 0.37 +0.9
577,139 - MIT1002_00530 0.49 +0.7
577,161 - MIT1002_00530 0.54 +0.0
577,166 + MIT1002_00530 0.55 -1.0
577,166 + MIT1002_00530 0.55 -0.0
577,174 - MIT1002_00530 0.57 -1.4
577,174 - MIT1002_00530 0.57 +0.0
577,174 - MIT1002_00530 0.57 +0.2
577,195 + MIT1002_00530 0.62 +0.8
577,200 + MIT1002_00530 0.63 +0.3
577,203 - MIT1002_00530 0.64 +0.0
577,203 - MIT1002_00530 0.64 -1.3
577,203 - MIT1002_00530 0.64 +1.4
577,205 + MIT1002_00530 0.65 +0.3
577,205 + MIT1002_00530 0.65 -0.4
577,205 + MIT1002_00530 0.65 -0.8
577,212 + MIT1002_00530 0.66 +0.1
577,289 + MIT1002_00530 0.84 +0.0
577,297 + MIT1002_00530 0.86 +0.7
577,297 + MIT1002_00530 0.86 -0.2
577,307 - MIT1002_00530 0.88 +0.1
577,379 + -0.2
577,429 + +1.3
577,429 + -0.9
577,437 - -0.7
577,437 - +0.4
577,442 - -0.3
577,442 - +0.1
577,444 - -0.5
577,588 + -0.8
577,588 + -0.2
577,588 + +0.7
577,596 - -0.8
577,710 + +0.1
577,810 - MIT1002_00531 0.16 +1.4
577,825 + MIT1002_00531 0.17 +0.6
577,830 + MIT1002_00531 0.18 -0.9
577,910 + MIT1002_00531 0.25 -0.6
577,928 - MIT1002_00531 0.26 -1.0
578,162 + MIT1002_00531 0.46 +0.1
578,189 + MIT1002_00531 0.48 +1.3
578,195 + MIT1002_00531 0.49 +0.3
578,215 + MIT1002_00531 0.50 -1.1
578,286 - MIT1002_00531 0.56 -0.2
578,299 - MIT1002_00531 0.58 +0.9
578,305 + MIT1002_00531 0.58 -2.9
578,305 + MIT1002_00531 0.58 +0.4
578,305 + MIT1002_00531 0.58 +0.7
578,313 - MIT1002_00531 0.59 +0.5
578,313 - MIT1002_00531 0.59 -0.8
578,313 - MIT1002_00531 0.59 +0.3
578,313 - MIT1002_00531 0.59 -0.9
578,313 - MIT1002_00531 0.59 +0.2
578,327 - MIT1002_00531 0.60 -0.1
578,342 + MIT1002_00531 0.61 -0.9
578,342 + MIT1002_00531 0.61 -1.4
578,350 - MIT1002_00531 0.62 -0.8

Or see this region's nucleotide sequence