Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00435 and MIT1002_00436 are separated by 13 nucleotides MIT1002_00436 and MIT1002_00437 are separated by 20 nucleotides
MIT1002_00435: MIT1002_00435 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 475,734 to 477,203
_00435
MIT1002_00436: MIT1002_00436 - Arginine N-succinyltransferase subunit beta, at 477,217 to 478,254
_00436
MIT1002_00437: MIT1002_00437 - Succinylornithine transaminase/acetylornithine aminotransferase, at 478,275 to 479,483
_00437
Position (kb) 477
478
479 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 476.267 kb on + strand, within MIT1002_00435 at 476.320 kb on + strand, within MIT1002_00435 at 476.323 kb on - strand, within MIT1002_00435 at 476.325 kb on + strand, within MIT1002_00435 at 476.328 kb on - strand, within MIT1002_00435 at 476.328 kb on - strand, within MIT1002_00435 at 476.354 kb on - strand, within MIT1002_00435 at 476.354 kb on - strand, within MIT1002_00435 at 476.360 kb on + strand, within MIT1002_00435 at 476.370 kb on - strand, within MIT1002_00435 at 476.375 kb on + strand, within MIT1002_00435 at 476.375 kb on + strand, within MIT1002_00435 at 476.433 kb on - strand, within MIT1002_00435 at 476.497 kb on + strand, within MIT1002_00435 at 476.505 kb on - strand, within MIT1002_00435 at 476.505 kb on - strand, within MIT1002_00435 at 476.505 kb on - strand, within MIT1002_00435 at 476.582 kb on - strand, within MIT1002_00435 at 476.583 kb on - strand, within MIT1002_00435 at 476.611 kb on + strand, within MIT1002_00435 at 476.614 kb on - strand, within MIT1002_00435 at 476.614 kb on - strand, within MIT1002_00435 at 476.619 kb on - strand, within MIT1002_00435 at 476.621 kb on - strand, within MIT1002_00435 at 476.621 kb on - strand, within MIT1002_00435 at 476.641 kb on - strand, within MIT1002_00435 at 476.644 kb on + strand, within MIT1002_00435 at 476.816 kb on - strand, within MIT1002_00435 at 477.000 kb on - strand, within MIT1002_00435 at 477.150 kb on + strand at 477.158 kb on - strand at 477.158 kb on - strand at 477.158 kb on - strand at 477.158 kb on - strand at 477.178 kb on - strand at 477.224 kb on - strand at 477.388 kb on + strand, within MIT1002_00436 at 477.436 kb on + strand, within MIT1002_00436 at 477.444 kb on - strand, within MIT1002_00436 at 477.444 kb on - strand, within MIT1002_00436 at 477.444 kb on - strand, within MIT1002_00436 at 477.446 kb on + strand, within MIT1002_00436 at 477.989 kb on - strand, within MIT1002_00436 at 478.136 kb on + strand, within MIT1002_00436 at 478.324 kb on - strand at 478.343 kb on - strand at 478.409 kb on + strand, within MIT1002_00437 at 478.433 kb on - strand, within MIT1002_00437 at 478.443 kb on + strand, within MIT1002_00437 at 478.470 kb on + strand, within MIT1002_00437 at 478.478 kb on - strand, within MIT1002_00437 at 478.478 kb on - strand, within MIT1002_00437 at 478.490 kb on - strand, within MIT1002_00437 at 478.528 kb on + strand, within MIT1002_00437 at 478.570 kb on + strand, within MIT1002_00437 at 478.570 kb on + strand, within MIT1002_00437 at 478.578 kb on - strand, within MIT1002_00437 at 478.578 kb on - strand, within MIT1002_00437 at 478.626 kb on + strand, within MIT1002_00437 at 478.634 kb on - strand, within MIT1002_00437 at 478.642 kb on - strand, within MIT1002_00437 at 478.656 kb on - strand, within MIT1002_00437 at 478.666 kb on + strand, within MIT1002_00437 at 478.666 kb on + strand, within MIT1002_00437 at 478.666 kb on + strand, within MIT1002_00437 at 478.666 kb on + strand, within MIT1002_00437 at 478.666 kb on + strand, within MIT1002_00437 at 478.666 kb on + strand, within MIT1002_00437 at 478.666 kb on + strand, within MIT1002_00437 at 478.666 kb on + strand, within MIT1002_00437 at 478.666 kb on + strand, within MIT1002_00437 at 478.674 kb on - strand, within MIT1002_00437 at 478.674 kb on - strand, within MIT1002_00437 at 478.674 kb on - strand, within MIT1002_00437 at 478.684 kb on - strand, within MIT1002_00437 at 478.780 kb on + strand, within MIT1002_00437 at 478.788 kb on - strand, within MIT1002_00437 at 478.790 kb on + strand, within MIT1002_00437 at 478.878 kb on + strand, within MIT1002_00437 at 478.991 kb on + strand, within MIT1002_00437 at 478.999 kb on - strand, within MIT1002_00437 at 478.999 kb on - strand, within MIT1002_00437 at 479.029 kb on - strand, within MIT1002_00437 at 479.156 kb on - strand, within MIT1002_00437
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3 remove 476,267 + MIT1002_00435 0.36 -1.6 476,320 + MIT1002_00435 0.40 -1.6 476,323 - MIT1002_00435 0.40 -0.1 476,325 + MIT1002_00435 0.40 -0.3 476,328 - MIT1002_00435 0.40 -0.4 476,328 - MIT1002_00435 0.40 +0.0 476,354 - MIT1002_00435 0.42 -3.0 476,354 - MIT1002_00435 0.42 +2.0 476,360 + MIT1002_00435 0.43 -0.8 476,370 - MIT1002_00435 0.43 -0.6 476,375 + MIT1002_00435 0.44 -0.1 476,375 + MIT1002_00435 0.44 -3.8 476,433 - MIT1002_00435 0.48 +1.1 476,497 + MIT1002_00435 0.52 -0.4 476,505 - MIT1002_00435 0.52 -1.6 476,505 - MIT1002_00435 0.52 +0.6 476,505 - MIT1002_00435 0.52 -0.9 476,582 - MIT1002_00435 0.58 +0.4 476,583 - MIT1002_00435 0.58 -2.1 476,611 + MIT1002_00435 0.60 -0.5 476,614 - MIT1002_00435 0.60 -0.5 476,614 - MIT1002_00435 0.60 -0.0 476,619 - MIT1002_00435 0.60 -0.5 476,621 - MIT1002_00435 0.60 -0.4 476,621 - MIT1002_00435 0.60 -0.4 476,641 - MIT1002_00435 0.62 -0.2 476,644 + MIT1002_00435 0.62 -2.3 476,816 - MIT1002_00435 0.74 -0.1 477,000 - MIT1002_00435 0.86 -0.7 477,150 + -1.8 477,158 - -2.7 477,158 - -0.2 477,158 - +0.3 477,158 - -0.8 477,178 - -1.3 477,224 - +0.2 477,388 + MIT1002_00436 0.16 -4.4 477,436 + MIT1002_00436 0.21 -2.8 477,444 - MIT1002_00436 0.22 +1.5 477,444 - MIT1002_00436 0.22 -3.3 477,444 - MIT1002_00436 0.22 -1.5 477,446 + MIT1002_00436 0.22 -2.5 477,989 - MIT1002_00436 0.74 -1.7 478,136 + MIT1002_00436 0.89 -1.5 478,324 - -4.8 478,343 - -4.0 478,409 + MIT1002_00437 0.11 -2.4 478,433 - MIT1002_00437 0.13 -5.1 478,443 + MIT1002_00437 0.14 -2.7 478,470 + MIT1002_00437 0.16 -1.5 478,478 - MIT1002_00437 0.17 -4.4 478,478 - MIT1002_00437 0.17 -3.1 478,490 - MIT1002_00437 0.18 -3.9 478,528 + MIT1002_00437 0.21 -0.8 478,570 + MIT1002_00437 0.24 -3.0 478,570 + MIT1002_00437 0.24 -4.0 478,578 - MIT1002_00437 0.25 -5.2 478,578 - MIT1002_00437 0.25 -3.5 478,626 + MIT1002_00437 0.29 -3.7 478,634 - MIT1002_00437 0.30 -3.6 478,642 - MIT1002_00437 0.30 -2.7 478,656 - MIT1002_00437 0.32 -4.4 478,666 + MIT1002_00437 0.32 -4.2 478,666 + MIT1002_00437 0.32 -4.2 478,666 + MIT1002_00437 0.32 -2.7 478,666 + MIT1002_00437 0.32 -3.0 478,666 + MIT1002_00437 0.32 -2.9 478,666 + MIT1002_00437 0.32 -7.8 478,666 + MIT1002_00437 0.32 -6.0 478,666 + MIT1002_00437 0.32 -4.0 478,666 + MIT1002_00437 0.32 -2.7 478,674 - MIT1002_00437 0.33 -3.2 478,674 - MIT1002_00437 0.33 -0.8 478,674 - MIT1002_00437 0.33 -2.3 478,684 - MIT1002_00437 0.34 -5.7 478,780 + MIT1002_00437 0.42 -1.1 478,788 - MIT1002_00437 0.42 -1.5 478,790 + MIT1002_00437 0.43 -3.4 478,878 + MIT1002_00437 0.50 -5.8 478,991 + MIT1002_00437 0.59 -4.0 478,999 - MIT1002_00437 0.60 -2.5 478,999 - MIT1002_00437 0.60 -4.7 479,029 - MIT1002_00437 0.62 -3.1 479,156 - MIT1002_00437 0.73 -2.8
Or see this region's nucleotide sequence