Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00152

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00151 and MIT1002_00152 are separated by 66 nucleotidesMIT1002_00152 and MIT1002_00153 are separated by 42 nucleotides MIT1002_00151: MIT1002_00151 - putative chloramphenical resistance permease RarD, at 165,861 to 166,775 _00151 MIT1002_00152: MIT1002_00152 - putative diguanylate cyclase YdaM, at 166,842 to 168,119 _00152 MIT1002_00153: MIT1002_00153 - DNA helicase II, at 168,162 to 170,333 _00153 Position (kb) 166 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 165.872 kb on + strandat 165.872 kb on + strandat 165.928 kb on + strandat 165.953 kb on + strand, within MIT1002_00151at 165.953 kb on + strand, within MIT1002_00151at 165.980 kb on - strand, within MIT1002_00151at 165.991 kb on + strand, within MIT1002_00151at 166.010 kb on + strand, within MIT1002_00151at 166.018 kb on - strand, within MIT1002_00151at 166.022 kb on + strand, within MIT1002_00151at 166.022 kb on + strand, within MIT1002_00151at 166.033 kb on + strand, within MIT1002_00151at 166.035 kb on + strand, within MIT1002_00151at 166.045 kb on + strand, within MIT1002_00151at 166.057 kb on + strand, within MIT1002_00151at 166.334 kb on - strand, within MIT1002_00151at 166.353 kb on - strand, within MIT1002_00151at 166.353 kb on - strand, within MIT1002_00151at 166.361 kb on - strand, within MIT1002_00151at 166.459 kb on + strand, within MIT1002_00151at 166.552 kb on - strand, within MIT1002_00151at 166.582 kb on - strand, within MIT1002_00151at 166.597 kb on - strand, within MIT1002_00151at 166.609 kb on + strand, within MIT1002_00151at 166.643 kb on - strand, within MIT1002_00151at 166.662 kb on + strand, within MIT1002_00151at 166.692 kb on - strandat 166.714 kb on + strandat 166.722 kb on - strandat 166.800 kb on - strandat 166.840 kb on + strandat 166.890 kb on - strandat 166.921 kb on + strandat 166.944 kb on + strandat 166.978 kb on + strand, within MIT1002_00152at 167.022 kb on - strand, within MIT1002_00152at 167.238 kb on + strand, within MIT1002_00152at 167.284 kb on - strand, within MIT1002_00152at 167.285 kb on + strand, within MIT1002_00152at 167.291 kb on - strand, within MIT1002_00152at 167.340 kb on - strand, within MIT1002_00152at 167.352 kb on - strand, within MIT1002_00152at 167.404 kb on - strand, within MIT1002_00152at 167.417 kb on + strand, within MIT1002_00152at 167.417 kb on + strand, within MIT1002_00152at 167.425 kb on - strand, within MIT1002_00152at 167.476 kb on + strand, within MIT1002_00152at 167.478 kb on + strand, within MIT1002_00152at 167.484 kb on - strand, within MIT1002_00152at 167.628 kb on + strand, within MIT1002_00152at 167.657 kb on - strand, within MIT1002_00152at 167.674 kb on - strand, within MIT1002_00152at 167.725 kb on - strand, within MIT1002_00152at 167.794 kb on - strand, within MIT1002_00152at 167.899 kb on - strand, within MIT1002_00152at 167.966 kb on + strand, within MIT1002_00152at 168.035 kb on + strandat 168.035 kb on + strandat 168.036 kb on + strandat 168.036 kb on + strandat 168.036 kb on + strandat 168.036 kb on + strandat 168.036 kb on + strandat 168.041 kb on + strandat 168.043 kb on - strandat 168.044 kb on - strandat 168.071 kb on + strandat 168.079 kb on - strandat 168.107 kb on - strandat 168.141 kb on - strandat 168.245 kb on + strandat 168.293 kb on + strandat 168.299 kb on - strandat 168.301 kb on - strandat 168.363 kb on + strandat 168.371 kb on - strandat 168.456 kb on - strand, within MIT1002_00153at 168.472 kb on - strand, within MIT1002_00153at 168.522 kb on - strand, within MIT1002_00153at 168.610 kb on - strand, within MIT1002_00153at 168.659 kb on - strand, within MIT1002_00153at 168.689 kb on - strand, within MIT1002_00153at 168.695 kb on + strand, within MIT1002_00153at 168.696 kb on + strand, within MIT1002_00153at 168.778 kb on - strand, within MIT1002_00153at 168.780 kb on + strand, within MIT1002_00153at 168.852 kb on - strand, within MIT1002_00153at 168.852 kb on - strand, within MIT1002_00153at 168.916 kb on - strand, within MIT1002_00153at 168.952 kb on - strand, within MIT1002_00153at 168.959 kb on - strand, within MIT1002_00153at 169.029 kb on + strand, within MIT1002_00153at 169.045 kb on + strand, within MIT1002_00153at 169.055 kb on - strand, within MIT1002_00153

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
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165,872 + -0.4
165,872 + -0.3
165,928 + +0.5
165,953 + MIT1002_00151 0.10 +0.7
165,953 + MIT1002_00151 0.10 -0.1
165,980 - MIT1002_00151 0.13 +0.4
165,991 + MIT1002_00151 0.14 -0.1
166,010 + MIT1002_00151 0.16 -0.4
166,018 - MIT1002_00151 0.17 -0.5
166,022 + MIT1002_00151 0.18 -1.3
166,022 + MIT1002_00151 0.18 +0.3
166,033 + MIT1002_00151 0.19 -0.0
166,035 + MIT1002_00151 0.19 +0.1
166,045 + MIT1002_00151 0.20 -0.3
166,057 + MIT1002_00151 0.21 -0.0
166,334 - MIT1002_00151 0.52 +0.5
166,353 - MIT1002_00151 0.54 -0.1
166,353 - MIT1002_00151 0.54 -0.8
166,361 - MIT1002_00151 0.55 +0.0
166,459 + MIT1002_00151 0.65 -0.4
166,552 - MIT1002_00151 0.76 -0.5
166,582 - MIT1002_00151 0.79 -1.0
166,597 - MIT1002_00151 0.80 -0.9
166,609 + MIT1002_00151 0.82 +0.2
166,643 - MIT1002_00151 0.85 +0.6
166,662 + MIT1002_00151 0.88 +0.5
166,692 - -0.4
166,714 + -1.0
166,722 - +0.4
166,800 - +0.2
166,840 + -0.4
166,890 - +0.1
166,921 + +0.7
166,944 + -2.5
166,978 + MIT1002_00152 0.11 +1.6
167,022 - MIT1002_00152 0.14 +0.5
167,238 + MIT1002_00152 0.31 -0.1
167,284 - MIT1002_00152 0.35 +0.4
167,285 + MIT1002_00152 0.35 -1.9
167,291 - MIT1002_00152 0.35 +3.0
167,340 - MIT1002_00152 0.39 +0.9
167,352 - MIT1002_00152 0.40 +0.9
167,404 - MIT1002_00152 0.44 +1.0
167,417 + MIT1002_00152 0.45 -0.1
167,417 + MIT1002_00152 0.45 +0.9
167,425 - MIT1002_00152 0.46 -0.7
167,476 + MIT1002_00152 0.50 -1.3
167,478 + MIT1002_00152 0.50 -1.3
167,484 - MIT1002_00152 0.50 +0.6
167,628 + MIT1002_00152 0.62 +0.2
167,657 - MIT1002_00152 0.64 -0.6
167,674 - MIT1002_00152 0.65 -3.1
167,725 - MIT1002_00152 0.69 +1.3
167,794 - MIT1002_00152 0.74 -0.2
167,899 - MIT1002_00152 0.83 +2.8
167,966 + MIT1002_00152 0.88 +0.9
168,035 + +1.5
168,035 + +0.3
168,036 + +0.5
168,036 + -0.7
168,036 + -0.3
168,036 + +1.0
168,036 + +0.0
168,041 + -0.7
168,043 - -0.6
168,044 - -0.1
168,071 + -1.7
168,079 - -0.1
168,107 - +0.1
168,141 - +1.1
168,245 + +1.3
168,293 + +0.2
168,299 - -0.7
168,301 - +1.3
168,363 + +0.1
168,371 - +0.9
168,456 - MIT1002_00153 0.14 +1.0
168,472 - MIT1002_00153 0.14 -1.2
168,522 - MIT1002_00153 0.17 -0.0
168,610 - MIT1002_00153 0.21 -2.0
168,659 - MIT1002_00153 0.23 -2.4
168,689 - MIT1002_00153 0.24 +0.0
168,695 + MIT1002_00153 0.25 +0.4
168,696 + MIT1002_00153 0.25 -1.8
168,778 - MIT1002_00153 0.28 -0.2
168,780 + MIT1002_00153 0.28 -1.8
168,852 - MIT1002_00153 0.32 -0.2
168,852 - MIT1002_00153 0.32 +0.4
168,916 - MIT1002_00153 0.35 +0.8
168,952 - MIT1002_00153 0.36 -2.7
168,959 - MIT1002_00153 0.37 +0.6
169,029 + MIT1002_00153 0.40 -2.0
169,045 + MIT1002_00153 0.41 +0.3
169,055 - MIT1002_00153 0.41 -1.0

Or see this region's nucleotide sequence