Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00120 and MIT1002_00121 are separated by 10 nucleotides MIT1002_00121 and MIT1002_00122 are separated by 89 nucleotides
MIT1002_00120: MIT1002_00120 - hypothetical protein, at 130,753 to 131,040
_00120
MIT1002_00121: MIT1002_00121 - hypothetical protein, at 131,051 to 131,251
_00121
MIT1002_00122: MIT1002_00122 - UvsW helicase, at 131,341 to 133,731
_00122
Position (kb) 131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 130.093 kb on + strand at 130.148 kb on + strand at 130.148 kb on + strand at 130.156 kb on - strand at 130.161 kb on - strand at 130.163 kb on + strand at 130.214 kb on - strand at 130.219 kb on - strand at 130.305 kb on + strand at 130.307 kb on + strand at 130.419 kb on - strand at 130.432 kb on - strand at 130.476 kb on + strand at 130.481 kb on + strand at 130.484 kb on - strand at 130.518 kb on + strand at 130.518 kb on + strand at 130.531 kb on + strand at 130.533 kb on + strand at 130.540 kb on + strand at 130.540 kb on + strand at 130.548 kb on - strand at 130.548 kb on - strand at 130.548 kb on - strand at 130.548 kb on - strand at 130.548 kb on - strand at 130.598 kb on + strand at 130.600 kb on + strand at 130.608 kb on - strand at 130.639 kb on + strand at 130.707 kb on + strand at 130.712 kb on + strand at 130.737 kb on + strand at 130.745 kb on - strand at 130.749 kb on + strand at 130.749 kb on + strand at 130.757 kb on - strand at 130.767 kb on - strand at 130.800 kb on + strand, within MIT1002_00120 at 130.800 kb on + strand, within MIT1002_00120 at 130.805 kb on + strand, within MIT1002_00120 at 130.808 kb on - strand, within MIT1002_00120 at 130.808 kb on - strand, within MIT1002_00120 at 130.808 kb on - strand, within MIT1002_00120 at 130.808 kb on - strand, within MIT1002_00120 at 130.808 kb on - strand, within MIT1002_00120 at 130.818 kb on - strand, within MIT1002_00120 at 130.818 kb on - strand, within MIT1002_00120 at 130.823 kb on - strand, within MIT1002_00120 at 130.876 kb on - strand, within MIT1002_00120 at 130.878 kb on - strand, within MIT1002_00120 at 130.980 kb on + strand, within MIT1002_00120 at 130.987 kb on + strand, within MIT1002_00120 at 131.004 kb on + strand, within MIT1002_00120 at 131.013 kb on - strand at 131.036 kb on + strand at 131.049 kb on - strand at 131.080 kb on - strand, within MIT1002_00121 at 131.080 kb on - strand, within MIT1002_00121 at 131.114 kb on + strand, within MIT1002_00121 at 131.138 kb on + strand, within MIT1002_00121 at 131.143 kb on + strand, within MIT1002_00121 at 131.177 kb on + strand, within MIT1002_00121 at 131.240 kb on - strand at 131.241 kb on + strand at 131.306 kb on + strand at 131.307 kb on - strand at 131.307 kb on - strand at 131.332 kb on - strand at 131.399 kb on + strand at 131.404 kb on - strand at 131.442 kb on + strand at 131.466 kb on + strand at 131.584 kb on - strand, within MIT1002_00122 at 131.590 kb on + strand, within MIT1002_00122 at 131.590 kb on + strand, within MIT1002_00122 at 131.591 kb on + strand, within MIT1002_00122 at 131.593 kb on - strand, within MIT1002_00122 at 131.598 kb on - strand, within MIT1002_00122 at 131.598 kb on - strand, within MIT1002_00122 at 131.598 kb on - strand, within MIT1002_00122 at 131.598 kb on - strand, within MIT1002_00122 at 131.598 kb on - strand, within MIT1002_00122 at 131.608 kb on - strand, within MIT1002_00122 at 131.644 kb on - strand, within MIT1002_00122 at 131.696 kb on + strand, within MIT1002_00122 at 131.696 kb on + strand, within MIT1002_00122 at 131.706 kb on + strand, within MIT1002_00122 at 131.729 kb on + strand, within MIT1002_00122 at 131.786 kb on - strand, within MIT1002_00122 at 131.811 kb on + strand, within MIT1002_00122 at 131.811 kb on + strand, within MIT1002_00122 at 131.819 kb on - strand, within MIT1002_00122 at 131.819 kb on - strand, within MIT1002_00122 at 131.819 kb on - strand, within MIT1002_00122 at 131.819 kb on - strand, within MIT1002_00122 at 131.889 kb on + strand, within MIT1002_00122 at 131.889 kb on + strand, within MIT1002_00122 at 131.897 kb on - strand, within MIT1002_00122 at 131.897 kb on - strand, within MIT1002_00122 at 131.923 kb on + strand, within MIT1002_00122 at 131.972 kb on + strand, within MIT1002_00122 at 132.036 kb on - strand, within MIT1002_00122 at 132.217 kb on - strand, within MIT1002_00122 at 132.251 kb on + strand, within MIT1002_00122
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3 remove 130,093 + +0.4 130,148 + -0.3 130,148 + +0.4 130,156 - -0.9 130,161 - -0.6 130,163 + -1.1 130,214 - +0.6 130,219 - +0.2 130,305 + -0.9 130,307 + +1.0 130,419 - -0.1 130,432 - -0.1 130,476 + -0.4 130,481 + -0.3 130,484 - +0.6 130,518 + +1.4 130,518 + -0.1 130,531 + +0.4 130,533 + -0.8 130,540 + -1.1 130,540 + -0.6 130,548 - -0.3 130,548 - +2.6 130,548 - +0.6 130,548 - -0.6 130,548 - +1.4 130,598 + +0.0 130,600 + -2.0 130,608 - +0.8 130,639 + +0.1 130,707 + +1.3 130,712 + -0.6 130,737 + +0.9 130,745 - -0.2 130,749 + -0.1 130,749 + +1.5 130,757 - -2.4 130,767 - +0.7 130,800 + MIT1002_00120 0.16 -0.4 130,800 + MIT1002_00120 0.16 +0.6 130,805 + MIT1002_00120 0.18 -0.8 130,808 - MIT1002_00120 0.19 -1.6 130,808 - MIT1002_00120 0.19 -0.4 130,808 - MIT1002_00120 0.19 +0.0 130,808 - MIT1002_00120 0.19 -1.8 130,808 - MIT1002_00120 0.19 -0.0 130,818 - MIT1002_00120 0.23 -0.3 130,818 - MIT1002_00120 0.23 +0.9 130,823 - MIT1002_00120 0.24 +0.8 130,876 - MIT1002_00120 0.43 +0.4 130,878 - MIT1002_00120 0.43 -0.4 130,980 + MIT1002_00120 0.79 +0.2 130,987 + MIT1002_00120 0.81 -0.9 131,004 + MIT1002_00120 0.87 +1.7 131,013 - -2.4 131,036 + -0.8 131,049 - +0.8 131,080 - MIT1002_00121 0.14 -1.1 131,080 - MIT1002_00121 0.14 -0.4 131,114 + MIT1002_00121 0.31 -1.2 131,138 + MIT1002_00121 0.43 +0.0 131,143 + MIT1002_00121 0.46 +0.5 131,177 + MIT1002_00121 0.63 -0.4 131,240 - +0.4 131,241 + -3.2 131,306 + -1.1 131,307 - +0.5 131,307 - +1.6 131,332 - +0.7 131,399 + +0.3 131,404 - +0.1 131,442 + +1.5 131,466 + -1.3 131,584 - MIT1002_00122 0.10 -0.2 131,590 + MIT1002_00122 0.10 +0.7 131,590 + MIT1002_00122 0.10 -1.0 131,591 + MIT1002_00122 0.10 -0.2 131,593 - MIT1002_00122 0.11 +0.7 131,598 - MIT1002_00122 0.11 -1.8 131,598 - MIT1002_00122 0.11 -0.1 131,598 - MIT1002_00122 0.11 -0.4 131,598 - MIT1002_00122 0.11 +0.0 131,598 - MIT1002_00122 0.11 +0.4 131,608 - MIT1002_00122 0.11 +0.9 131,644 - MIT1002_00122 0.13 +0.6 131,696 + MIT1002_00122 0.15 -0.3 131,696 + MIT1002_00122 0.15 +0.0 131,706 + MIT1002_00122 0.15 +0.4 131,729 + MIT1002_00122 0.16 +0.1 131,786 - MIT1002_00122 0.19 -1.0 131,811 + MIT1002_00122 0.20 -0.1 131,811 + MIT1002_00122 0.20 -0.4 131,819 - MIT1002_00122 0.20 +2.0 131,819 - MIT1002_00122 0.20 +0.9 131,819 - MIT1002_00122 0.20 +0.1 131,819 - MIT1002_00122 0.20 +0.4 131,889 + MIT1002_00122 0.23 -1.4 131,889 + MIT1002_00122 0.23 -3.3 131,897 - MIT1002_00122 0.23 -0.0 131,897 - MIT1002_00122 0.23 +0.9 131,923 + MIT1002_00122 0.24 +0.0 131,972 + MIT1002_00122 0.26 +0.5 132,036 - MIT1002_00122 0.29 +2.1 132,217 - MIT1002_00122 0.37 +0.1 132,251 + MIT1002_00122 0.38 +0.4
Or see this region's nucleotide sequence