Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00066

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00064 and MIT1002_00065 overlap by 1 nucleotidesMIT1002_00065 and MIT1002_00066 are separated by 141 nucleotidesMIT1002_00066 and MIT1002_00067 are separated by 55 nucleotidesMIT1002_00067 and MIT1002_00068 are separated by 103 nucleotides MIT1002_00064: MIT1002_00064 - L-threonine 3-dehydrogenase, at 70,046 to 71,071 _00064 MIT1002_00065: MIT1002_00065 - Thiosulfate sulfurtransferase GlpE, at 71,071 to 71,382 _00065 MIT1002_00066: MIT1002_00066 - Rhomboid protease GlpG, at 71,524 to 72,387 _00066 MIT1002_00067: MIT1002_00067 - flagellar basal body-associated protein FliL-like protein, at 72,443 to 72,856 _00067 MIT1002_00068: MIT1002_00068 - Chorismate--pyruvate lyase, at 72,960 to 73,574 _00068 Position (kb) 71 72 73Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 70.557 kb on - strand, within MIT1002_00064at 70.605 kb on - strand, within MIT1002_00064at 70.630 kb on + strand, within MIT1002_00064at 70.644 kb on + strand, within MIT1002_00064at 70.652 kb on - strand, within MIT1002_00064at 70.803 kb on - strand, within MIT1002_00064at 70.828 kb on + strand, within MIT1002_00064at 70.839 kb on - strand, within MIT1002_00064at 70.918 kb on + strand, within MIT1002_00064at 70.967 kb on - strand, within MIT1002_00064at 71.039 kb on - strandat 71.039 kb on - strandat 71.122 kb on + strand, within MIT1002_00065at 71.130 kb on - strand, within MIT1002_00065at 71.149 kb on + strand, within MIT1002_00065at 71.149 kb on + strand, within MIT1002_00065at 71.170 kb on - strand, within MIT1002_00065at 71.175 kb on + strand, within MIT1002_00065at 71.175 kb on + strand, within MIT1002_00065at 71.254 kb on + strand, within MIT1002_00065at 71.403 kb on - strandat 71.453 kb on + strandat 71.461 kb on - strandat 71.461 kb on - strandat 71.479 kb on - strandat 71.609 kb on + strandat 71.609 kb on + strandat 71.617 kb on - strand, within MIT1002_00066at 71.617 kb on - strand, within MIT1002_00066at 71.617 kb on - strand, within MIT1002_00066at 71.617 kb on - strand, within MIT1002_00066at 71.651 kb on + strand, within MIT1002_00066at 71.659 kb on + strand, within MIT1002_00066at 71.659 kb on + strand, within MIT1002_00066at 71.703 kb on + strand, within MIT1002_00066at 71.826 kb on - strand, within MIT1002_00066at 72.019 kb on - strand, within MIT1002_00066at 72.064 kb on - strand, within MIT1002_00066at 72.127 kb on + strand, within MIT1002_00066at 72.127 kb on + strand, within MIT1002_00066at 72.127 kb on + strand, within MIT1002_00066at 72.135 kb on - strand, within MIT1002_00066at 72.135 kb on - strand, within MIT1002_00066at 72.169 kb on + strand, within MIT1002_00066at 72.177 kb on - strand, within MIT1002_00066at 72.225 kb on - strand, within MIT1002_00066at 72.271 kb on + strand, within MIT1002_00066at 72.358 kb on + strandat 72.365 kb on - strandat 72.383 kb on - strandat 72.410 kb on - strandat 72.487 kb on + strand, within MIT1002_00067at 72.570 kb on + strand, within MIT1002_00067at 72.570 kb on + strand, within MIT1002_00067at 72.623 kb on - strand, within MIT1002_00067at 72.666 kb on - strand, within MIT1002_00067at 72.666 kb on - strand, within MIT1002_00067at 72.691 kb on + strand, within MIT1002_00067at 72.779 kb on + strand, within MIT1002_00067at 72.787 kb on - strand, within MIT1002_00067at 72.787 kb on - strand, within MIT1002_00067at 72.856 kb on - strandat 73.053 kb on + strand, within MIT1002_00068at 73.125 kb on + strand, within MIT1002_00068at 73.131 kb on - strand, within MIT1002_00068at 73.133 kb on + strand, within MIT1002_00068at 73.200 kb on - strand, within MIT1002_00068at 73.229 kb on + strand, within MIT1002_00068at 73.299 kb on + strand, within MIT1002_00068at 73.307 kb on - strand, within MIT1002_00068at 73.307 kb on - strand, within MIT1002_00068at 73.344 kb on - strand, within MIT1002_00068

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 3
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70,557 - MIT1002_00064 0.50 -0.2
70,605 - MIT1002_00064 0.54 +0.1
70,630 + MIT1002_00064 0.57 -0.9
70,644 + MIT1002_00064 0.58 -0.0
70,652 - MIT1002_00064 0.59 -0.2
70,803 - MIT1002_00064 0.74 -1.0
70,828 + MIT1002_00064 0.76 -1.0
70,839 - MIT1002_00064 0.77 -1.0
70,918 + MIT1002_00064 0.85 +0.4
70,967 - MIT1002_00064 0.90 -0.3
71,039 - +1.0
71,039 - -1.6
71,122 + MIT1002_00065 0.16 -0.2
71,130 - MIT1002_00065 0.19 +0.9
71,149 + MIT1002_00065 0.25 +1.0
71,149 + MIT1002_00065 0.25 +0.3
71,170 - MIT1002_00065 0.32 -0.3
71,175 + MIT1002_00065 0.33 -1.1
71,175 + MIT1002_00065 0.33 +1.2
71,254 + MIT1002_00065 0.59 -0.4
71,403 - +0.1
71,453 + -0.3
71,461 - -0.6
71,461 - -0.7
71,479 - -0.6
71,609 + -0.1
71,609 + -2.1
71,617 - MIT1002_00066 0.11 -3.8
71,617 - MIT1002_00066 0.11 -2.3
71,617 - MIT1002_00066 0.11 -0.4
71,617 - MIT1002_00066 0.11 -3.0
71,651 + MIT1002_00066 0.15 -1.4
71,659 + MIT1002_00066 0.16 -0.1
71,659 + MIT1002_00066 0.16 -2.0
71,703 + MIT1002_00066 0.21 -2.4
71,826 - MIT1002_00066 0.35 -3.2
72,019 - MIT1002_00066 0.57 -1.9
72,064 - MIT1002_00066 0.62 -3.1
72,127 + MIT1002_00066 0.70 -1.0
72,127 + MIT1002_00066 0.70 -3.4
72,127 + MIT1002_00066 0.70 -2.0
72,135 - MIT1002_00066 0.71 -2.0
72,135 - MIT1002_00066 0.71 -2.0
72,169 + MIT1002_00066 0.75 -1.6
72,177 - MIT1002_00066 0.76 -1.5
72,225 - MIT1002_00066 0.81 -1.9
72,271 + MIT1002_00066 0.86 -2.4
72,358 + -3.0
72,365 - -0.8
72,383 - -1.8
72,410 - -2.1
72,487 + MIT1002_00067 0.11 -0.4
72,570 + MIT1002_00067 0.31 -0.9
72,570 + MIT1002_00067 0.31 +1.3
72,623 - MIT1002_00067 0.43 +0.4
72,666 - MIT1002_00067 0.54 +0.2
72,666 - MIT1002_00067 0.54 +1.4
72,691 + MIT1002_00067 0.60 -0.4
72,779 + MIT1002_00067 0.81 +0.1
72,787 - MIT1002_00067 0.83 +0.2
72,787 - MIT1002_00067 0.83 -0.9
72,856 - -0.4
73,053 + MIT1002_00068 0.15 -2.9
73,125 + MIT1002_00068 0.27 -3.5
73,131 - MIT1002_00068 0.28 -2.9
73,133 + MIT1002_00068 0.28 -1.4
73,200 - MIT1002_00068 0.39 -2.5
73,229 + MIT1002_00068 0.44 -2.9
73,299 + MIT1002_00068 0.55 -0.4
73,307 - MIT1002_00068 0.56 -2.9
73,307 - MIT1002_00068 0.56 -4.6
73,344 - MIT1002_00068 0.62 -3.0

Or see this region's nucleotide sequence