Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04160 and MIT1002_04161 are separated by 261 nucleotides MIT1002_04161 and MIT1002_04162 overlap by 14 nucleotides MIT1002_04162 and MIT1002_04163 are separated by 129 nucleotides MIT1002_04163 and MIT1002_04164 are separated by 675 nucleotides MIT1002_04164 and MIT1002_04165 overlap by 4 nucleotides MIT1002_04165 and MIT1002_04166 are separated by 39 nucleotides
MIT1002_04160: MIT1002_04160 - hypothetical protein, at 27,469 to 28,086
_04160
MIT1002_04161: MIT1002_04161 - hypothetical protein, at 28,348 to 28,524
_04161
MIT1002_04162: MIT1002_04162 - hypothetical protein, at 28,511 to 28,813
_04162
MIT1002_04163: MIT1002_04163 - hypothetical protein, at 28,943 to 29,203
_04163
MIT1002_04164: MIT1002_04164 - hypothetical protein, at 29,879 to 30,001
_04164
MIT1002_04165: MIT1002_04165 - hypothetical protein, at 29,998 to 30,129
_04165
MIT1002_04166: MIT1002_04166 - Serine/threonine-protein kinase HipA, at 30,169 to 31,452
_04166
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 27.958 kb on + strand, within MIT1002_04160 at 28.007 kb on - strand, within MIT1002_04160 at 28.051 kb on - strand at 28.114 kb on + strand at 28.140 kb on - strand at 28.158 kb on - strand at 28.194 kb on - strand at 28.196 kb on + strand at 28.209 kb on - strand at 28.284 kb on - strand at 28.324 kb on + strand at 28.328 kb on - strand at 28.354 kb on - strand at 28.424 kb on + strand, within MIT1002_04161 at 28.429 kb on - strand, within MIT1002_04161 at 28.459 kb on + strand, within MIT1002_04161 at 28.460 kb on + strand, within MIT1002_04161 at 28.460 kb on + strand, within MIT1002_04161 at 28.625 kb on + strand, within MIT1002_04162 at 28.684 kb on + strand, within MIT1002_04162 at 28.699 kb on + strand, within MIT1002_04162 at 28.699 kb on - strand, within MIT1002_04162 at 28.751 kb on + strand, within MIT1002_04162 at 28.785 kb on + strand at 28.794 kb on - strand at 28.794 kb on - strand at 28.852 kb on + strand at 28.852 kb on - strand at 28.889 kb on + strand at 28.889 kb on - strand at 28.949 kb on - strand at 28.960 kb on + strand at 29.011 kb on - strand, within MIT1002_04163 at 29.096 kb on + strand, within MIT1002_04163 at 29.124 kb on + strand, within MIT1002_04163 at 29.124 kb on + strand, within MIT1002_04163 at 29.124 kb on + strand, within MIT1002_04163 at 29.132 kb on - strand, within MIT1002_04163 at 29.141 kb on + strand, within MIT1002_04163 at 29.271 kb on + strand at 29.327 kb on + strand at 29.582 kb on + strand at 29.590 kb on - strand at 29.595 kb on + strand at 29.603 kb on - strand at 29.603 kb on - strand at 29.782 kb on + strand at 29.790 kb on + strand at 29.790 kb on - strand at 29.799 kb on - strand at 29.876 kb on - strand at 29.899 kb on - strand, within MIT1002_04164 at 29.929 kb on + strand, within MIT1002_04164 at 29.954 kb on + strand, within MIT1002_04164 at 29.962 kb on - strand, within MIT1002_04164 at 30.074 kb on - strand, within MIT1002_04165 at 30.074 kb on - strand, within MIT1002_04165 at 30.097 kb on - strand, within MIT1002_04165 at 30.097 kb on - strand, within MIT1002_04165 at 30.117 kb on + strand at 30.132 kb on - strand at 30.144 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2 remove 27,958 + MIT1002_04160 0.79 +0.1 28,007 - MIT1002_04160 0.87 -0.2 28,051 - +1.1 28,114 + -1.4 28,140 - -0.2 28,158 - -0.2 28,194 - +0.4 28,196 + -1.3 28,209 - -0.2 28,284 - -0.3 28,324 + +0.2 28,328 - -0.1 28,354 - -0.2 28,424 + MIT1002_04161 0.43 +0.9 28,429 - MIT1002_04161 0.46 +0.6 28,459 + MIT1002_04161 0.63 +0.4 28,460 + MIT1002_04161 0.63 +0.2 28,460 + MIT1002_04161 0.63 +0.3 28,625 + MIT1002_04162 0.38 +1.4 28,684 + MIT1002_04162 0.57 +0.4 28,699 + MIT1002_04162 0.62 +0.3 28,699 - MIT1002_04162 0.62 +0.3 28,751 + MIT1002_04162 0.79 +0.7 28,785 + +0.8 28,794 - +0.9 28,794 - -0.3 28,852 + +0.1 28,852 - -0.1 28,889 + +0.2 28,889 - +0.3 28,949 - -0.9 28,960 + +0.8 29,011 - MIT1002_04163 0.26 +1.3 29,096 + MIT1002_04163 0.59 +0.3 29,124 + MIT1002_04163 0.69 -0.4 29,124 + MIT1002_04163 0.69 -0.4 29,124 + MIT1002_04163 0.69 +0.6 29,132 - MIT1002_04163 0.72 +0.8 29,141 + MIT1002_04163 0.76 +2.2 29,271 + -1.6 29,327 + +0.1 29,582 + +0.4 29,590 - -2.3 29,595 + -0.4 29,603 - -0.9 29,603 - +1.1 29,782 + +0.8 29,790 + +0.8 29,790 - -0.0 29,799 - -0.9 29,876 - +1.8 29,899 - MIT1002_04164 0.16 +0.5 29,929 + MIT1002_04164 0.41 -0.3 29,954 + MIT1002_04164 0.61 -1.0 29,962 - MIT1002_04164 0.67 -1.4 30,074 - MIT1002_04165 0.58 +0.4 30,074 - MIT1002_04165 0.58 -0.7 30,097 - MIT1002_04165 0.75 -1.0 30,097 - MIT1002_04165 0.75 -0.5 30,117 + -1.4 30,132 - +0.3 30,144 + +0.2
Or see this region's nucleotide sequence