Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04134

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04134 and MIT1002_04135 are separated by 29 nucleotides MIT1002_04134: MIT1002_04134 - Sporulation initiation inhibitor protein soj, at 1 to 927 _04134 MIT1002_04135: MIT1002_04135 - ParB/RepB/Spo0J family partition protein, at 957 to 2,048 _04135 Position (kb) 0 1Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 0.008 kb on + strandat 0.008 kb on + strandat 0.008 kb on + strandat 0.034 kb on - strandat 0.051 kb on + strandat 0.051 kb on + strandat 0.054 kb on + strandat 0.059 kb on - strandat 0.061 kb on + strandat 0.074 kb on - strandat 0.100 kb on - strand, within MIT1002_04134at 0.116 kb on + strand, within MIT1002_04134at 0.117 kb on - strand, within MIT1002_04134at 0.119 kb on - strand, within MIT1002_04134at 0.129 kb on + strand, within MIT1002_04134at 0.129 kb on - strand, within MIT1002_04134at 0.151 kb on + strand, within MIT1002_04134at 0.172 kb on - strand, within MIT1002_04134at 0.177 kb on - strand, within MIT1002_04134at 0.227 kb on + strand, within MIT1002_04134at 0.235 kb on + strand, within MIT1002_04134at 0.235 kb on + strand, within MIT1002_04134at 0.237 kb on + strand, within MIT1002_04134at 0.266 kb on + strand, within MIT1002_04134at 0.278 kb on - strand, within MIT1002_04134at 0.304 kb on + strand, within MIT1002_04134at 0.319 kb on + strand, within MIT1002_04134at 0.345 kb on - strand, within MIT1002_04134at 0.345 kb on - strand, within MIT1002_04134at 0.352 kb on + strand, within MIT1002_04134at 0.360 kb on + strand, within MIT1002_04134at 0.370 kb on + strand, within MIT1002_04134at 0.371 kb on + strand, within MIT1002_04134at 0.371 kb on + strand, within MIT1002_04134at 0.373 kb on + strand, within MIT1002_04134at 0.373 kb on + strand, within MIT1002_04134at 0.374 kb on + strand, within MIT1002_04134at 0.383 kb on + strand, within MIT1002_04134at 0.391 kb on - strand, within MIT1002_04134at 0.411 kb on - strand, within MIT1002_04134at 0.433 kb on + strand, within MIT1002_04134at 0.433 kb on + strand, within MIT1002_04134at 0.462 kb on + strand, within MIT1002_04134at 0.474 kb on + strand, within MIT1002_04134at 0.475 kb on + strand, within MIT1002_04134at 0.482 kb on - strand, within MIT1002_04134at 0.482 kb on - strand, within MIT1002_04134at 0.483 kb on - strand, within MIT1002_04134at 0.494 kb on + strand, within MIT1002_04134at 0.529 kb on + strand, within MIT1002_04134at 0.529 kb on + strand, within MIT1002_04134at 0.537 kb on - strand, within MIT1002_04134at 0.542 kb on + strand, within MIT1002_04134at 0.542 kb on + strand, within MIT1002_04134at 0.542 kb on + strand, within MIT1002_04134at 0.570 kb on + strand, within MIT1002_04134at 0.570 kb on + strand, within MIT1002_04134at 0.590 kb on + strand, within MIT1002_04134at 0.595 kb on + strand, within MIT1002_04134at 0.599 kb on + strand, within MIT1002_04134at 0.611 kb on + strand, within MIT1002_04134at 0.611 kb on + strand, within MIT1002_04134at 0.614 kb on + strand, within MIT1002_04134at 0.614 kb on + strand, within MIT1002_04134at 0.617 kb on - strand, within MIT1002_04134at 0.619 kb on + strand, within MIT1002_04134at 0.622 kb on - strand, within MIT1002_04134at 0.622 kb on - strand, within MIT1002_04134at 0.633 kb on + strand, within MIT1002_04134at 0.633 kb on + strand, within MIT1002_04134at 0.633 kb on + strand, within MIT1002_04134at 0.633 kb on + strand, within MIT1002_04134at 0.665 kb on + strand, within MIT1002_04134at 0.673 kb on - strand, within MIT1002_04134at 0.673 kb on - strand, within MIT1002_04134at 0.682 kb on + strand, within MIT1002_04134at 0.795 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.797 kb on + strand, within MIT1002_04134at 0.803 kb on + strand, within MIT1002_04134at 0.805 kb on - strand, within MIT1002_04134at 0.805 kb on - strand, within MIT1002_04134at 0.805 kb on - strand, within MIT1002_04134at 0.816 kb on + strand, within MIT1002_04134at 0.816 kb on + strand, within MIT1002_04134at 0.821 kb on + strand, within MIT1002_04134at 0.823 kb on - strand, within MIT1002_04134at 0.824 kb on - strand, within MIT1002_04134at 0.824 kb on - strand, within MIT1002_04134at 0.847 kb on + strandat 0.894 kb on + strandat 0.899 kb on + strandat 0.899 kb on + strandat 0.902 kb on - strandat 0.907 kb on - strandat 0.912 kb on - strandat 0.921 kb on + strandat 0.946 kb on - strandat 0.949 kb on + strandat 0.955 kb on - strandat 0.959 kb on + strandat 0.960 kb on - strandat 0.967 kb on - strandat 1.005 kb on - strandat 1.068 kb on - strand, within MIT1002_04135at 1.082 kb on + strand, within MIT1002_04135at 1.090 kb on - strand, within MIT1002_04135at 1.090 kb on - strand, within MIT1002_04135at 1.144 kb on - strand, within MIT1002_04135at 1.156 kb on + strand, within MIT1002_04135at 1.157 kb on - strand, within MIT1002_04135at 1.159 kb on + strand, within MIT1002_04135at 1.165 kb on - strand, within MIT1002_04135at 1.165 kb on - strand, within MIT1002_04135at 1.165 kb on - strand, within MIT1002_04135at 1.165 kb on - strand, within MIT1002_04135at 1.188 kb on + strand, within MIT1002_04135at 1.207 kb on + strand, within MIT1002_04135at 1.278 kb on + strand, within MIT1002_04135at 1.280 kb on + strand, within MIT1002_04135at 1.280 kb on + strand, within MIT1002_04135at 1.280 kb on + strand, within MIT1002_04135at 1.280 kb on + strand, within MIT1002_04135at 1.280 kb on + strand, within MIT1002_04135at 1.280 kb on + strand, within MIT1002_04135at 1.280 kb on + strand, within MIT1002_04135at 1.280 kb on + strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.288 kb on - strand, within MIT1002_04135at 1.300 kb on + strand, within MIT1002_04135at 1.308 kb on - strand, within MIT1002_04135at 1.310 kb on + strand, within MIT1002_04135at 1.313 kb on - strand, within MIT1002_04135at 1.318 kb on - strand, within MIT1002_04135at 1.318 kb on - strand, within MIT1002_04135at 1.318 kb on - strand, within MIT1002_04135at 1.318 kb on - strand, within MIT1002_04135at 1.322 kb on + strand, within MIT1002_04135at 1.330 kb on + strand, within MIT1002_04135at 1.330 kb on + strand, within MIT1002_04135at 1.336 kb on + strand, within MIT1002_04135at 1.340 kb on - strand, within MIT1002_04135at 1.414 kb on - strand, within MIT1002_04135at 1.415 kb on + strand, within MIT1002_04135at 1.529 kb on + strand, within MIT1002_04135at 1.564 kb on - strand, within MIT1002_04135at 1.570 kb on - strand, within MIT1002_04135at 1.613 kb on + strand, within MIT1002_04135at 1.613 kb on + strand, within MIT1002_04135at 1.613 kb on + strand, within MIT1002_04135at 1.613 kb on - strand, within MIT1002_04135at 1.624 kb on + strand, within MIT1002_04135at 1.626 kb on - strand, within MIT1002_04135at 1.626 kb on - strand, within MIT1002_04135at 1.626 kb on - strand, within MIT1002_04135at 1.632 kb on - strand, within MIT1002_04135at 1.706 kb on + strand, within MIT1002_04135at 1.709 kb on - strand, within MIT1002_04135at 1.723 kb on + strand, within MIT1002_04135at 1.744 kb on - strand, within MIT1002_04135at 1.744 kb on - strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.757 kb on + strand, within MIT1002_04135at 1.765 kb on + strand, within MIT1002_04135at 1.765 kb on - strand, within MIT1002_04135at 1.765 kb on - strand, within MIT1002_04135at 1.765 kb on - strand, within MIT1002_04135at 1.765 kb on - strand, within MIT1002_04135at 1.765 kb on - strand, within MIT1002_04135at 1.801 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.810 kb on + strand, within MIT1002_04135at 1.818 kb on - strand, within MIT1002_04135at 1.818 kb on - strand, within MIT1002_04135at 1.818 kb on - strand, within MIT1002_04135at 1.826 kb on - strand, within MIT1002_04135at 1.860 kb on - strand, within MIT1002_04135at 1.892 kb on - strand, within MIT1002_04135

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
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8 + -2.3
8 + -2.0
8 + -2.8
34 - -0.8
51 + -1.6
51 + -4.8
54 + -1.2
59 - -2.8
61 + -4.7
74 - -2.6
100 - MIT1002_04134 0.11 -2.2
116 + MIT1002_04134 0.12 -2.6
117 - MIT1002_04134 0.13 -1.6
119 - MIT1002_04134 0.13 -0.6
129 + MIT1002_04134 0.14 -2.6
129 - MIT1002_04134 0.14 -0.9
151 + MIT1002_04134 0.16 -3.4
172 - MIT1002_04134 0.18 -2.0
177 - MIT1002_04134 0.19 -2.4
227 + MIT1002_04134 0.24 +2.0
235 + MIT1002_04134 0.25 -1.4
235 + MIT1002_04134 0.25 -2.5
237 + MIT1002_04134 0.25 -2.1
266 + MIT1002_04134 0.29 -2.0
278 - MIT1002_04134 0.30 -0.7
304 + MIT1002_04134 0.33 -1.4
319 + MIT1002_04134 0.34 -2.1
345 - MIT1002_04134 0.37 -1.2
345 - MIT1002_04134 0.37 -1.4
352 + MIT1002_04134 0.38 -3.4
360 + MIT1002_04134 0.39 -4.0
370 + MIT1002_04134 0.40 -3.4
371 + MIT1002_04134 0.40 -2.0
371 + MIT1002_04134 0.40 -0.4
373 + MIT1002_04134 0.40 +0.8
373 + MIT1002_04134 0.40 -1.7
374 + MIT1002_04134 0.40 -2.1
383 + MIT1002_04134 0.41 -1.7
391 - MIT1002_04134 0.42 -0.9
411 - MIT1002_04134 0.44 -3.4
433 + MIT1002_04134 0.47 -5.4
433 + MIT1002_04134 0.47 -4.1
462 + MIT1002_04134 0.50 -3.8
474 + MIT1002_04134 0.51 -4.6
475 + MIT1002_04134 0.51 -2.3
482 - MIT1002_04134 0.52 -3.9
482 - MIT1002_04134 0.52 -2.0
483 - MIT1002_04134 0.52 -2.9
494 + MIT1002_04134 0.53 -2.4
529 + MIT1002_04134 0.57 -3.8
529 + MIT1002_04134 0.57 -3.0
537 - MIT1002_04134 0.58 -4.2
542 + MIT1002_04134 0.58 -2.6
542 + MIT1002_04134 0.58 -3.1
542 + MIT1002_04134 0.58 -2.8
570 + MIT1002_04134 0.61 -2.1
570 + MIT1002_04134 0.61 -0.6
590 + MIT1002_04134 0.64 -2.0
595 + MIT1002_04134 0.64 -1.8
599 + MIT1002_04134 0.65 -1.0
611 + MIT1002_04134 0.66 -1.4
611 + MIT1002_04134 0.66 -2.2
614 + MIT1002_04134 0.66 -1.4
614 + MIT1002_04134 0.66 -2.0
617 - MIT1002_04134 0.66 -2.1
619 + MIT1002_04134 0.67 -2.3
622 - MIT1002_04134 0.67 -0.1
622 - MIT1002_04134 0.67 +0.5
633 + MIT1002_04134 0.68 -2.3
633 + MIT1002_04134 0.68 -2.1
633 + MIT1002_04134 0.68 -3.0
633 + MIT1002_04134 0.68 -2.5
665 + MIT1002_04134 0.72 -3.1
673 - MIT1002_04134 0.72 -1.7
673 - MIT1002_04134 0.72 -1.4
682 + MIT1002_04134 0.73 -4.2
795 + MIT1002_04134 0.86 -3.1
797 + MIT1002_04134 0.86 -2.0
797 + MIT1002_04134 0.86 -1.0
797 + MIT1002_04134 0.86 -3.7
797 + MIT1002_04134 0.86 -1.9
797 + MIT1002_04134 0.86 -3.6
797 + MIT1002_04134 0.86 -2.1
797 + MIT1002_04134 0.86 -1.4
797 + MIT1002_04134 0.86 -3.4
797 + MIT1002_04134 0.86 +0.1
797 + MIT1002_04134 0.86 -4.5
797 + MIT1002_04134 0.86 -1.2
797 + MIT1002_04134 0.86 -1.4
797 + MIT1002_04134 0.86 -2.9
803 + MIT1002_04134 0.87 -1.3
805 - MIT1002_04134 0.87 -2.5
805 - MIT1002_04134 0.87 +0.7
805 - MIT1002_04134 0.87 -2.0
816 + MIT1002_04134 0.88 -2.1
816 + MIT1002_04134 0.88 -4.0
821 + MIT1002_04134 0.88 -3.7
823 - MIT1002_04134 0.89 -1.7
824 - MIT1002_04134 0.89 -2.1
824 - MIT1002_04134 0.89 -2.2
847 + -0.3
894 + -1.1
899 + -4.0
899 + -2.7
902 - -1.0
907 - +0.0
912 - -3.4
921 + -0.7
946 - -1.9
949 + -1.1
955 - -2.7
959 + -2.9
960 - -1.3
967 - -3.5
1,005 - -4.6
1,068 - MIT1002_04135 0.10 -1.2
1,082 + MIT1002_04135 0.11 -2.7
1,090 - MIT1002_04135 0.12 -2.3
1,090 - MIT1002_04135 0.12 +0.0
1,144 - MIT1002_04135 0.17 -1.8
1,156 + MIT1002_04135 0.18 -2.7
1,157 - MIT1002_04135 0.18 -2.2
1,159 + MIT1002_04135 0.18 -1.0
1,165 - MIT1002_04135 0.19 -2.2
1,165 - MIT1002_04135 0.19 -2.3
1,165 - MIT1002_04135 0.19 -1.5
1,165 - MIT1002_04135 0.19 -1.2
1,188 + MIT1002_04135 0.21 -4.3
1,207 + MIT1002_04135 0.23 +1.0
1,278 + MIT1002_04135 0.29 -3.1
1,280 + MIT1002_04135 0.30 +0.0
1,280 + MIT1002_04135 0.30 -2.6
1,280 + MIT1002_04135 0.30 -0.7
1,280 + MIT1002_04135 0.30 -2.0
1,280 + MIT1002_04135 0.30 -1.8
1,280 + MIT1002_04135 0.30 -3.3
1,280 + MIT1002_04135 0.30 -1.0
1,280 + MIT1002_04135 0.30 -1.8
1,288 - MIT1002_04135 0.30 -2.2
1,288 - MIT1002_04135 0.30 -1.6
1,288 - MIT1002_04135 0.30 -3.8
1,288 - MIT1002_04135 0.30 -2.1
1,288 - MIT1002_04135 0.30 -1.4
1,288 - MIT1002_04135 0.30 -2.3
1,288 - MIT1002_04135 0.30 -2.0
1,288 - MIT1002_04135 0.30 -1.5
1,288 - MIT1002_04135 0.30 -2.0
1,300 + MIT1002_04135 0.31 -2.7
1,308 - MIT1002_04135 0.32 +2.1
1,310 + MIT1002_04135 0.32 -1.4
1,313 - MIT1002_04135 0.33 -2.6
1,318 - MIT1002_04135 0.33 -2.7
1,318 - MIT1002_04135 0.33 -3.8
1,318 - MIT1002_04135 0.33 -1.6
1,318 - MIT1002_04135 0.33 -1.8
1,322 + MIT1002_04135 0.33 -3.2
1,330 + MIT1002_04135 0.34 -1.3
1,330 + MIT1002_04135 0.34 -1.0
1,336 + MIT1002_04135 0.35 -1.8
1,340 - MIT1002_04135 0.35 -2.7
1,414 - MIT1002_04135 0.42 -1.0
1,415 + MIT1002_04135 0.42 -2.0
1,529 + MIT1002_04135 0.52 -1.4
1,564 - MIT1002_04135 0.56 -0.1
1,570 - MIT1002_04135 0.56 -2.4
1,613 + MIT1002_04135 0.60 -1.2
1,613 + MIT1002_04135 0.60 -2.7
1,613 + MIT1002_04135 0.60 -1.2
1,613 - MIT1002_04135 0.60 -2.4
1,624 + MIT1002_04135 0.61 -2.7
1,626 - MIT1002_04135 0.61 -1.6
1,626 - MIT1002_04135 0.61 -4.3
1,626 - MIT1002_04135 0.61 -2.8
1,632 - MIT1002_04135 0.62 -1.9
1,706 + MIT1002_04135 0.69 -2.0
1,709 - MIT1002_04135 0.69 -2.0
1,723 + MIT1002_04135 0.70 -2.0
1,744 - MIT1002_04135 0.72 -1.3
1,744 - MIT1002_04135 0.72 -3.5
1,757 + MIT1002_04135 0.73 -0.8
1,757 + MIT1002_04135 0.73 -1.5
1,757 + MIT1002_04135 0.73 -0.8
1,757 + MIT1002_04135 0.73 -2.2
1,757 + MIT1002_04135 0.73 -1.3
1,757 + MIT1002_04135 0.73 -1.8
1,757 + MIT1002_04135 0.73 -3.0
1,757 + MIT1002_04135 0.73 -4.5
1,757 + MIT1002_04135 0.73 -2.8
1,757 + MIT1002_04135 0.73 -2.6
1,757 + MIT1002_04135 0.73 -0.5
1,765 + MIT1002_04135 0.74 -1.8
1,765 - MIT1002_04135 0.74 -1.1
1,765 - MIT1002_04135 0.74 -0.4
1,765 - MIT1002_04135 0.74 -2.7
1,765 - MIT1002_04135 0.74 -0.4
1,765 - MIT1002_04135 0.74 +0.3
1,801 + MIT1002_04135 0.77 -2.0
1,810 + MIT1002_04135 0.78 -4.2
1,810 + MIT1002_04135 0.78 -1.0
1,810 + MIT1002_04135 0.78 -2.3
1,810 + MIT1002_04135 0.78 -0.0
1,810 + MIT1002_04135 0.78 -2.0
1,810 + MIT1002_04135 0.78 -1.8
1,810 + MIT1002_04135 0.78 -3.7
1,810 + MIT1002_04135 0.78 -1.5
1,810 + MIT1002_04135 0.78 -0.7
1,810 + MIT1002_04135 0.78 -3.3
1,818 - MIT1002_04135 0.79 -2.6
1,818 - MIT1002_04135 0.79 -3.0
1,818 - MIT1002_04135 0.79 -4.3
1,826 - MIT1002_04135 0.80 -1.4
1,860 - MIT1002_04135 0.83 +0.2
1,892 - MIT1002_04135 0.86 -3.0

Or see this region's nucleotide sequence