Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04049

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
4,547,137	-		MIT1002_04048	0.48	-0.8
4,547,182	+		MIT1002_04048	0.50	-0.6
4,547,182	+		MIT1002_04048	0.50	-0.5
4,547,192	+		MIT1002_04048	0.51	-1.1
4,547,259	+		MIT1002_04048	0.55	-0.4
4,547,370	-		MIT1002_04048	0.61	+1.1
4,547,414	-		MIT1002_04048	0.63	+1.4
4,547,461	-		MIT1002_04048	0.66	-1.4
4,547,502	-		MIT1002_04048	0.68	+1.9
4,547,518	-		MIT1002_04048	0.69	+2.3
4,547,592	+		MIT1002_04048	0.73	-1.5
4,547,643	+		MIT1002_04048	0.75	-1.3
4,547,643	+		MIT1002_04048	0.75	-2.0
4,547,651	+		MIT1002_04048	0.76	-1.5
4,547,651	-		MIT1002_04048	0.76	-0.3
4,547,664	+		MIT1002_04048	0.77	-1.3
4,547,808	-		MIT1002_04048	0.84	-0.7
4,547,851	+		MIT1002_04048	0.87	+1.3
4,547,859	-		MIT1002_04048	0.87	+0.7
4,547,878	+		MIT1002_04048	0.88	+1.3
4,547,881	-		MIT1002_04048	0.88	+1.0
4,547,972	+				-0.3
4,547,984	+				-0.2
4,548,011	-				+0.1
4,548,043	-				-0.6
4,548,080	+				+0.0
4,548,089	-				-0.8
4,548,105	+				-0.9
4,548,264	-				-1.5
4,548,264	-				-0.5
4,548,274	-				-1.1
4,548,332	-				-0.4
4,548,357	-				+0.8
4,548,393	+				-0.7
4,548,399	-				-2.0
4,548,399	-				+1.3
4,548,474	-				-0.0
4,548,512	+		MIT1002_04049	0.11	-1.0
4,548,667	-		MIT1002_04049	0.15	-1.0
4,548,718	-		MIT1002_04049	0.16	+2.1
4,548,747	-		MIT1002_04049	0.17	-1.3
4,548,754	+		MIT1002_04049	0.17	-1.7
4,548,754	+		MIT1002_04049	0.17	-2.5
4,548,762	-		MIT1002_04049	0.17	+1.1
4,548,781	-		MIT1002_04049	0.18	-0.4
4,548,789	-		MIT1002_04049	0.18	+1.0
4,548,886	-		MIT1002_04049	0.21	-0.0
4,548,954	+		MIT1002_04049	0.22	+1.2
4,548,955	-		MIT1002_04049	0.22	+0.1
4,549,072	+		MIT1002_04049	0.25	+0.7
4,549,080	-		MIT1002_04049	0.26	-2.2
4,549,106	-		MIT1002_04049	0.26	-0.5
4,549,149	-		MIT1002_04049	0.27	-0.4
4,549,267	-		MIT1002_04049	0.30	-0.7
4,549,391	+		MIT1002_04049	0.34	-1.0
4,549,399	+		MIT1002_04049	0.34	-1.5
4,549,435	+		MIT1002_04049	0.35	-2.3
4,549,510	+		MIT1002_04049	0.37	-2.0
4,549,510	+		MIT1002_04049	0.37	+2.1
4,549,525	-		MIT1002_04049	0.37	-0.9
4,549,530	-		MIT1002_04049	0.37	+0.9
4,549,556	+		MIT1002_04049	0.38	+0.2
4,549,557	-		MIT1002_04049	0.38	+1.3
4,549,578	+		MIT1002_04049	0.38	+0.4
4,549,586	-		MIT1002_04049	0.39	-0.7
4,549,649	+		MIT1002_04049	0.40	+0.2
4,549,657	-		MIT1002_04049	0.40	-1.2
4,549,802	+		MIT1002_04049	0.44	+1.9
4,549,864	-		MIT1002_04049	0.46	-1.7
4,549,916	-		MIT1002_04049	0.47	+0.3
4,549,967	-		MIT1002_04049	0.48	-1.2
4,549,982	+		MIT1002_04049	0.49	-1.0
4,549,982	-		MIT1002_04049	0.49	+0.6
4,550,098	+		MIT1002_04049	0.52	-0.3
4,550,106	-		MIT1002_04049	0.52	-1.0
4,550,106	-		MIT1002_04049	0.52	+0.3
4,550,125	-		MIT1002_04049	0.53	-0.5
4,550,245	+		MIT1002_04049	0.56	-0.8
4,550,338	+		MIT1002_04049	0.58	+0.3
4,550,353	+		MIT1002_04049	0.58	-0.7
4,550,363	+		MIT1002_04049	0.59	-1.3
4,550,404	+		MIT1002_04049	0.60	+1.0
4,550,404	+		MIT1002_04049	0.60	-1.5
4,550,412	-		MIT1002_04049	0.60	-0.8
4,550,424	-		MIT1002_04049	0.60	-0.3
4,550,424	-		MIT1002_04049	0.60	-0.9
4,550,424	-		MIT1002_04049	0.60	-2.9
4,550,432	+		MIT1002_04049	0.60	-0.1
4,550,572	+		MIT1002_04049	0.64	+0.5
4,550,572	+		MIT1002_04049	0.64	-0.3
4,550,572	+		MIT1002_04049	0.64	-0.0
4,550,572	+		MIT1002_04049	0.64	-0.8
4,550,572	+		MIT1002_04049	0.64	-1.1
4,550,573	+		MIT1002_04049	0.64	-1.4
4,550,578	+		MIT1002_04049	0.64	+0.3
4,550,580	-		MIT1002_04049	0.64	+0.0
4,550,580	-		MIT1002_04049	0.64	-0.6
4,550,580	-		MIT1002_04049	0.64	-0.7
4,550,580	-		MIT1002_04049	0.64	-1.4
4,550,596	-		MIT1002_04049	0.65	+0.9
4,550,668	+		MIT1002_04049	0.67	+0.7
4,550,668	+		MIT1002_04049	0.67	+1.1
4,550,676	-		MIT1002_04049	0.67	-1.3
4,550,676	-		MIT1002_04049	0.67	+0.2
4,550,781	+		MIT1002_04049	0.69	-0.9
4,550,786	+		MIT1002_04049	0.70	-0.7
4,550,786	+		MIT1002_04049	0.70	+0.2
4,550,786	+		MIT1002_04049	0.70	-0.6
4,550,786	+		MIT1002_04049	0.70	-3.0
4,550,794	-		MIT1002_04049	0.70	-1.5
4,550,803	-		MIT1002_04049	0.70	+0.4
4,550,914	-		MIT1002_04049	0.73	+0.8
4,550,965	+		MIT1002_04049	0.74	-1.5
4,551,014	+		MIT1002_04049	0.75	-0.6
4,551,168	+		MIT1002_04049	0.79	+0.2
4,551,215	-		MIT1002_04049	0.81	+0.4
4,551,217	+		MIT1002_04049	0.81	-1.2
4,551,245	+		MIT1002_04049	0.81	-0.7
4,551,281	-		MIT1002_04049	0.82	+0.1
4,551,334	-		MIT1002_04049	0.84	+1.1
4,551,347	+		MIT1002_04049	0.84	-0.3
4,551,409	+		MIT1002_04049	0.86	-0.0
4,551,409	+		MIT1002_04049	0.86	+2.3
4,551,417	-		MIT1002_04049	0.86	+0.2
4,551,480	-		MIT1002_04049	0.88	+1.0
4,551,518	+		MIT1002_04049	0.89	-1.5
4,551,518	+		MIT1002_04049	0.89	+1.2
4,551,531	+		MIT1002_04049	0.89	+1.7
4,551,566	-		MIT1002_04049	0.90	-0.3
4,551,662	-				-0.7
4,551,675	+				-0.4
4,551,704	+				+0.3
4,551,810	+				+0.3
4,551,853	-				+0.8
4,551,886	-				-0.1
4,551,892	+				+0.6
4,551,923	+				-0.3
4,551,929	+				+0.3
4,551,937	-				+0.0
4,552,004	-				+0.5
4,552,004	-				+0.1
4,552,199	-		MIT1002_04050	0.31	-2.2
4,552,465	-		MIT1002_04050	0.74	-2.7
4,552,692	+		MIT1002_04051	0.15	-1.0
4,552,694	+		MIT1002_04051	0.15	+0.2
4,552,700	-		MIT1002_04051	0.16	-0.2
4,552,700	-		MIT1002_04051	0.16	-1.3
4,552,702	-		MIT1002_04051	0.17	+0.3
4,552,720	+		MIT1002_04051	0.20	-1.2
4,552,720	+		MIT1002_04051	0.20	+1.8
4,552,728	-		MIT1002_04051	0.22	-0.3
4,552,747	-		MIT1002_04051	0.25	+1.2
4,552,751	+		MIT1002_04051	0.26	+0.1
4,552,802	-		MIT1002_04051	0.36	+1.9
4,552,918	+		MIT1002_04051	0.59	+0.3
4,552,933	+		MIT1002_04051	0.62	-0.2
4,552,933	+		MIT1002_04051	0.62	-0.3
4,552,933	+		MIT1002_04051	0.62	+1.1
4,552,933	+		MIT1002_04051	0.62	-0.5
4,552,933	+		MIT1002_04051	0.62	+0.1
4,552,933	+		MIT1002_04051	0.62	+0.3
4,552,941	-		MIT1002_04051	0.64	-1.6
4,552,941	-		MIT1002_04051	0.64	+0.4
4,552,941	-		MIT1002_04051	0.64	+2.4
4,552,941	-		MIT1002_04051	0.64	+0.6
4,552,941	-		MIT1002_04051	0.64	+1.9