Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03965

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
4,448,740	+		MIT1002_03964	0.16	-0.4
4,448,815	-		MIT1002_03964	0.24	+0.9
4,448,843	+		MIT1002_03964	0.27	+1.3
4,448,851	-		MIT1002_03964	0.28	-0.1
4,448,888	+		MIT1002_03964	0.32	-0.4
4,448,896	-		MIT1002_03964	0.33	-0.2
4,448,907	+		MIT1002_03964	0.34	-0.4
4,449,086	-		MIT1002_03964	0.53	-0.9
4,449,141	+		MIT1002_03964	0.59	-0.7
4,449,214	+		MIT1002_03964	0.67	+0.1
4,449,221	+		MIT1002_03964	0.67	+0.2
4,449,223	+		MIT1002_03964	0.68	-0.9
4,449,224	+		MIT1002_03964	0.68	-0.6
4,449,227	-		MIT1002_03964	0.68	+0.1
4,449,275	+		MIT1002_03964	0.73	+0.5
4,449,366	+		MIT1002_03964	0.83	+0.5
4,449,374	-		MIT1002_03964	0.84	+1.2
4,449,374	-		MIT1002_03964	0.84	-0.6
4,449,407	-		MIT1002_03964	0.87	+0.4
4,449,422	+		MIT1002_03964	0.89	-0.8
4,449,437	-				+0.6
4,449,441	+				-0.2
4,449,478	+				+1.0
4,449,569	+				+0.3
4,449,616	+				-0.7
4,449,792	-		MIT1002_03965	0.16	-2.4
4,449,832	-		MIT1002_03965	0.20	+0.3
4,449,841	+		MIT1002_03965	0.21	-1.8
4,449,917	+		MIT1002_03965	0.30	-2.4
4,449,947	-		MIT1002_03965	0.33	-2.8
4,449,951	+		MIT1002_03965	0.33	-2.6
4,449,986	+		MIT1002_03965	0.37	-2.4
4,449,986	+		MIT1002_03965	0.37	+0.0
4,449,986	+		MIT1002_03965	0.37	-3.7
4,449,986	+		MIT1002_03965	0.37	-2.2
4,449,986	+		MIT1002_03965	0.37	-1.4
4,449,986	+		MIT1002_03965	0.37	-1.7
4,449,986	+		MIT1002_03965	0.37	-1.5
4,449,986	+		MIT1002_03965	0.37	+0.2
4,449,986	+		MIT1002_03965	0.37	-1.4
4,449,986	+		MIT1002_03965	0.37	-0.4
4,449,986	+		MIT1002_03965	0.37	-3.1
4,449,986	+		MIT1002_03965	0.37	-3.9
4,449,986	+		MIT1002_03965	0.37	-2.7
4,449,994	-		MIT1002_03965	0.38	-1.7
4,449,994	-		MIT1002_03965	0.38	-1.7
4,449,994	-		MIT1002_03965	0.38	-1.8
4,449,994	-		MIT1002_03965	0.38	-2.4
4,449,994	-		MIT1002_03965	0.38	-2.2
4,449,994	-		MIT1002_03965	0.38	-3.6
4,449,994	-		MIT1002_03965	0.38	-2.3
4,449,995	-		MIT1002_03965	0.38	-2.7
4,449,995	-		MIT1002_03965	0.38	+0.8
4,450,039	+		MIT1002_03965	0.43	-2.0
4,450,149	+		MIT1002_03965	0.55	-1.3
4,450,157	-		MIT1002_03965	0.56	-2.1
4,450,188	+		MIT1002_03965	0.59	-3.7
4,450,191	-		MIT1002_03965	0.60	-1.1
4,450,193	+		MIT1002_03965	0.60	+0.1
4,450,201	-		MIT1002_03965	0.61	-1.8
4,450,287	+		MIT1002_03965	0.70	-1.1
4,450,294	-		MIT1002_03965	0.71	-1.9
4,450,294	-		MIT1002_03965	0.71	-2.2
4,450,331	+		MIT1002_03965	0.75	-3.7
4,450,339	-		MIT1002_03965	0.76	+0.4
4,450,379	-		MIT1002_03965	0.81	-2.6
4,450,427	-		MIT1002_03965	0.86	-2.1
4,450,427	-		MIT1002_03965	0.86	-3.2
4,450,432	+		MIT1002_03965	0.86	-2.0
4,450,435	-		MIT1002_03965	0.87	-1.7
4,450,470	+				-1.7
4,450,478	-				-0.0
4,450,480	-				-3.7
4,450,509	+				+0.2
4,450,563	-				-0.5
4,450,609	+				-0.2
4,450,615	-				+0.6
4,450,762	+				-0.7
4,450,770	-				+0.2
4,450,841	-		MIT1002_03966	0.12	+0.7
4,450,863	+		MIT1002_03966	0.13	-0.0
4,450,863	+		MIT1002_03966	0.13	+1.0
4,450,876	-		MIT1002_03966	0.15	-0.4
4,450,934	+		MIT1002_03966	0.20	-0.3
4,450,942	-		MIT1002_03966	0.20	-0.0
4,450,966	-		MIT1002_03966	0.22	-0.2
4,451,010	+		MIT1002_03966	0.26	+0.3
4,451,083	-		MIT1002_03966	0.33	-0.5
4,451,112	+		MIT1002_03966	0.35	-1.3
4,451,120	-		MIT1002_03966	0.36	+2.0
4,451,173	-		MIT1002_03966	0.40	-0.2
4,451,241	-		MIT1002_03966	0.46	+0.3
4,451,292	-		MIT1002_03966	0.51	-1.1
4,451,301	+		MIT1002_03966	0.52	+0.7
4,451,304	-		MIT1002_03966	0.52	-0.9
4,451,307	-		MIT1002_03966	0.52	-1.0
4,451,329	-		MIT1002_03966	0.54	+0.9
4,451,416	+		MIT1002_03966	0.62	+0.8
4,451,441	+		MIT1002_03966	0.64	-0.3
4,451,449	-		MIT1002_03966	0.65	-3.0
4,451,449	-		MIT1002_03966	0.65	-0.8
4,451,449	-		MIT1002_03966	0.65	-0.1
4,451,449	-		MIT1002_03966	0.65	-0.7
4,451,483	+		MIT1002_03966	0.68	+0.4
4,451,515	-		MIT1002_03966	0.70	-0.9