Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03901

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
4,370,409	+		MIT1002_03900	0.35	-0.4
4,370,436	+		MIT1002_03900	0.37	-0.6
4,370,447	+		MIT1002_03900	0.38	-0.4
4,370,503	+		MIT1002_03900	0.42	-0.7
4,370,505	-		MIT1002_03900	0.42	+0.1
4,370,516	-		MIT1002_03900	0.43	+0.2
4,370,516	-		MIT1002_03900	0.43	-1.6
4,370,518	+		MIT1002_03900	0.43	+0.1
4,370,547	+		MIT1002_03900	0.45	-0.0
4,370,648	-		MIT1002_03900	0.52	-0.6
4,370,720	-		MIT1002_03900	0.57	-0.2
4,370,728	-		MIT1002_03900	0.58	-0.3
4,370,756	-		MIT1002_03900	0.59	-0.1
4,370,758	-		MIT1002_03900	0.60	-0.6
4,370,802	-		MIT1002_03900	0.63	-0.5
4,370,931	-		MIT1002_03900	0.72	-0.5
4,370,952	+		MIT1002_03900	0.73	+0.0
4,370,999	+		MIT1002_03900	0.77	-0.1
4,371,068	+		MIT1002_03900	0.81	+0.3
4,371,068	+		MIT1002_03900	0.81	-1.1
4,371,068	+		MIT1002_03900	0.81	+1.8
4,371,068	+		MIT1002_03900	0.81	+0.1
4,371,181	-		MIT1002_03900	0.89	-2.4
4,371,183	+		MIT1002_03900	0.90	-0.3
4,371,193	+				-0.8
4,371,193	+				-0.8
4,371,193	+				-1.3
4,371,201	-				-2.5
4,371,201	-				+1.4
4,371,217	+				-0.2
4,371,217	+				+0.4
4,371,217	+				+1.0
4,371,217	+				-1.4
4,371,217	+				-1.5
4,371,225	-				+0.7
4,371,225	-				-0.9
4,371,225	-				+1.1
4,371,356	+				-0.9
4,371,356	+				+0.1
4,371,356	+				+0.3
4,371,356	+				-4.4
4,371,356	+				+0.2
4,371,356	+				-0.2
4,371,364	-				-0.5
4,371,364	-				-0.1
4,371,365	-				+0.3
4,371,387	+				-0.3
4,371,402	-				-1.6
4,371,436	+				-1.4
4,371,463	+		MIT1002_03901	0.13	-2.4
4,371,466	-		MIT1002_03901	0.13	-0.7
4,371,471	-		MIT1002_03901	0.14	-0.7
4,371,474	-		MIT1002_03901	0.14	+0.8
4,371,500	+		MIT1002_03901	0.17	+0.0
4,371,513	-		MIT1002_03901	0.19	+0.5
4,371,525	-		MIT1002_03901	0.20	+0.2
4,371,612	+		MIT1002_03901	0.30	+1.2
4,371,673	+		MIT1002_03901	0.37	+0.5
4,371,708	+		MIT1002_03901	0.41	+0.1
4,371,708	+		MIT1002_03901	0.41	-0.2
4,371,716	-		MIT1002_03901	0.41	+1.1
4,371,716	-		MIT1002_03901	0.41	+1.6
4,371,756	+		MIT1002_03901	0.46	+0.8
4,371,756	+		MIT1002_03901	0.46	-0.1
4,371,756	+		MIT1002_03901	0.46	+0.0
4,371,759	-		MIT1002_03901	0.46	+0.7
4,371,877	-		MIT1002_03901	0.60	-1.2
4,371,922	+		MIT1002_03901	0.65	+0.4
4,371,925	+		MIT1002_03901	0.65	-0.4
4,372,191	-				+0.6
4,372,281	-				-0.3
4,372,282	+				+0.3
4,372,283	+				+0.6
4,372,329	+		MIT1002_03902	0.11	-1.3
4,372,337	-		MIT1002_03902	0.13	+0.1
4,372,383	+		MIT1002_03902	0.21	-0.4
4,372,398	+		MIT1002_03902	0.24	-0.7
4,372,433	+		MIT1002_03902	0.30	+0.0
4,372,441	-		MIT1002_03902	0.32	+0.8
4,372,498	+		MIT1002_03902	0.42	-0.8
4,372,645	+		MIT1002_03902	0.69	+1.0
4,372,682	+		MIT1002_03902	0.76	+0.3
4,372,692	+		MIT1002_03902	0.77	+0.1
4,372,692	+		MIT1002_03902	0.77	-1.9
4,372,692	+		MIT1002_03902	0.77	-2.1
4,372,692	+		MIT1002_03902	0.77	+0.8
4,372,700	-		MIT1002_03902	0.79	+1.4
4,372,735	-		MIT1002_03902	0.85	+0.8
4,372,743	+		MIT1002_03902	0.87	+0.5
4,372,758	-		MIT1002_03902	0.89	+0.7
4,372,782	+				+1.4
4,372,782	+				+0.3
4,372,782	+				-1.7
4,372,782	+				+0.4
4,372,790	-				+0.8
4,372,790	-				+0.3
4,372,790	-				-1.1
4,372,790	-				+0.5
4,372,790	-				-0.5
4,372,790	-				+0.6
4,372,814	+				+0.7
4,372,868	-				+0.5
4,372,985	+		MIT1002_03903	0.11	+0.2
4,373,034	+		MIT1002_03903	0.14	+1.6
4,373,035	-		MIT1002_03903	0.14	-0.3
4,373,088	-		MIT1002_03903	0.18	-0.4
4,373,174	+		MIT1002_03903	0.24	-2.0
4,373,183	+		MIT1002_03903	0.24	+0.0