Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03779

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
4,222,581	-		MIT1002_03777	0.57	+0.0
4,222,604	-		MIT1002_03777	0.60	+0.5
4,222,604	-		MIT1002_03777	0.60	-0.0
4,222,616	-		MIT1002_03777	0.61	+0.7
4,222,625	-		MIT1002_03777	0.63	-1.4
4,222,687	+		MIT1002_03777	0.71	+1.0
4,222,729	-		MIT1002_03777	0.76	+0.3
4,222,764	+		MIT1002_03777	0.81	+0.5
4,222,764	+		MIT1002_03777	0.81	-1.0
4,222,820	+		MIT1002_03777	0.89	+0.5
4,222,848	+				+0.1
4,222,963	+				+0.7
4,222,963	+				+0.2
4,222,973	-				-0.8
4,222,986	+				-1.0
4,222,994	-				+0.2
4,223,035	+				-2.5
4,223,041	+				+1.5
4,223,057	-				-0.1
4,223,333	+		MIT1002_03778	0.73	-0.2
4,223,387	-		MIT1002_03778	0.88	-1.6
4,223,507	-				+0.8
4,223,522	-				-0.4
4,223,571	+				+1.7
4,223,586	+				-0.0
4,223,586	+				-0.8
4,223,586	+				+0.2
4,223,586	+				-0.7
4,223,586	+				+0.4
4,223,594	-				-0.0
4,223,594	-				+0.2
4,223,594	-				-0.1
4,223,619	-				+1.4
4,223,620	+				+0.3
4,223,642	+				+0.8
4,223,679	+		MIT1002_03779	0.12	+0.2
4,223,679	+		MIT1002_03779	0.12	-0.3
4,223,686	-		MIT1002_03779	0.12	+0.1
4,223,857	+		MIT1002_03779	0.24	-1.2
4,224,089	+		MIT1002_03779	0.40	-0.5
4,224,206	-		MIT1002_03779	0.48	-2.0
4,224,248	+		MIT1002_03779	0.51	+1.2
4,224,248	+		MIT1002_03779	0.51	+0.3
4,224,248	+		MIT1002_03779	0.51	-0.0
4,224,268	-		MIT1002_03779	0.53	-1.8
4,224,275	+		MIT1002_03779	0.53	-1.0
4,224,275	+		MIT1002_03779	0.53	-0.9
4,224,283	-		MIT1002_03779	0.54	-3.2
4,224,283	-		MIT1002_03779	0.54	-1.2
4,224,300	-		MIT1002_03779	0.55	-0.9
4,224,305	-		MIT1002_03779	0.55	+0.2
4,224,324	+		MIT1002_03779	0.57	+0.6
4,224,351	-		MIT1002_03779	0.58	-0.8
4,224,372	-		MIT1002_03779	0.60	+1.5
4,224,420	-		MIT1002_03779	0.63	+0.9
4,224,426	+		MIT1002_03779	0.64	-1.2
4,224,426	+		MIT1002_03779	0.64	+0.7
4,224,434	-		MIT1002_03779	0.64	+1.0
4,224,509	+		MIT1002_03779	0.70	-1.6
4,224,509	+		MIT1002_03779	0.70	-0.8
4,224,514	+		MIT1002_03779	0.70	-0.9
4,224,552	-		MIT1002_03779	0.73	-2.0
4,224,552	-		MIT1002_03779	0.73	-0.8
4,224,552	-		MIT1002_03779	0.73	-0.0
4,224,585	+		MIT1002_03779	0.75	-0.6
4,224,674	+		MIT1002_03779	0.81	-0.5
4,224,682	-		MIT1002_03779	0.82	+0.3
4,224,720	+		MIT1002_03779	0.84	-1.2
4,224,732	+		MIT1002_03779	0.85	-0.9
4,224,732	+		MIT1002_03779	0.85	-0.5
4,224,811	-				-0.8
4,224,840	-				-0.2
4,224,874	-				+0.5
4,224,894	+				-0.4
4,225,122	+				+1.2
4,225,122	+				-1.1
4,225,122	+				-0.7
4,225,127	+				-0.7
4,225,130	-				-0.3
4,225,130	-				+0.5
4,225,130	-				-0.2
4,225,130	-				-0.1
4,225,130	-				+0.2
4,225,185	-		MIT1002_03780	0.13	+0.6
4,225,269	+		MIT1002_03780	0.18	-1.6
4,225,348	+		MIT1002_03780	0.23	-0.4
4,225,348	+		MIT1002_03780	0.23	-0.6
4,225,361	-		MIT1002_03780	0.23	+0.1
4,225,413	-		MIT1002_03780	0.27	-1.8
4,225,443	-		MIT1002_03780	0.28	+0.9
4,225,588	+		MIT1002_03780	0.37	+0.7
4,225,588	+		MIT1002_03780	0.37	+0.6
4,225,596	-		MIT1002_03780	0.38	-0.0
4,225,596	-		MIT1002_03780	0.38	+0.2
4,225,596	-		MIT1002_03780	0.38	+0.0
4,225,596	-		MIT1002_03780	0.38	+0.4
4,225,596	-		MIT1002_03780	0.38	-0.2
4,225,604	+		MIT1002_03780	0.38	+0.1
4,225,604	+		MIT1002_03780	0.38	+1.9
4,225,635	-		MIT1002_03780	0.40	-1.0
4,225,637	+		MIT1002_03780	0.40	-0.1
4,225,637	+		MIT1002_03780	0.40	+0.2
4,225,645	-		MIT1002_03780	0.41	+0.2
4,225,645	-		MIT1002_03780	0.41	-1.7
4,225,703	-		MIT1002_03780	0.44	+0.7
4,225,837	+		MIT1002_03780	0.52	-0.2
4,225,837	+		MIT1002_03780	0.52	+0.9
4,225,837	+		MIT1002_03780	0.52	-0.1
4,225,837	+		MIT1002_03780	0.52	-0.3
4,225,837	+		MIT1002_03780	0.52	+0.1
4,225,837	+		MIT1002_03780	0.52	+0.3
4,225,837	+		MIT1002_03780	0.52	+0.5
4,225,837	+		MIT1002_03780	0.52	-1.3
4,225,837	+		MIT1002_03780	0.52	+0.1
4,225,837	+		MIT1002_03780	0.52	-3.1
4,225,837	+		MIT1002_03780	0.52	-0.7
4,225,837	+		MIT1002_03780	0.52	-1.0
4,225,837	+		MIT1002_03780	0.52	+0.4
4,225,845	-		MIT1002_03780	0.53	-1.7
4,225,845	-		MIT1002_03780	0.53	+0.8
4,225,845	-		MIT1002_03780	0.53	-0.6
4,225,845	-		MIT1002_03780	0.53	-0.8
4,225,845	-		MIT1002_03780	0.53	-1.2
4,225,845	-		MIT1002_03780	0.53	-0.9
4,225,845	-		MIT1002_03780	0.53	+0.2
4,225,845	-		MIT1002_03780	0.53	+0.2
4,225,860	+		MIT1002_03780	0.54	+0.6
4,225,860	+		MIT1002_03780	0.54	-0.2
4,225,864	-		MIT1002_03780	0.54	-0.8
4,225,868	-		MIT1002_03780	0.54	+0.6
4,225,870	+		MIT1002_03780	0.54	-1.3
4,225,878	-		MIT1002_03780	0.55	-0.4
4,225,878	-		MIT1002_03780	0.55	-0.3
4,225,887	-		MIT1002_03780	0.55	-1.6