Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03516

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
3,928,008	-		MIT1002_03514	0.67	+0.2
3,928,102	+		MIT1002_03514	0.76	+0.3
3,928,110	-		MIT1002_03514	0.77	-1.8
3,928,168	+		MIT1002_03514	0.83	+0.6
3,928,169	+		MIT1002_03514	0.83	-0.6
3,928,169	+		MIT1002_03514	0.83	+0.5
3,928,177	-		MIT1002_03514	0.84	+0.6
3,928,206	+		MIT1002_03514	0.87	+0.1
3,928,290	+				+0.2
3,928,350	-				+0.2
3,928,419	-		MIT1002_03515	0.19	-1.5
3,928,502	+		MIT1002_03515	0.32	-0.7
3,928,568	+		MIT1002_03515	0.42	-0.9
3,928,667	-		MIT1002_03515	0.57	+0.4
3,928,819	-		MIT1002_03515	0.81	-0.3
3,928,830	+		MIT1002_03515	0.82	-0.0
3,928,830	+		MIT1002_03515	0.82	-1.0
3,928,830	+		MIT1002_03515	0.82	-1.1
3,928,864	-		MIT1002_03515	0.88	-1.8
3,928,934	+				-2.8
3,929,014	+				-1.6
3,929,030	-				-5.9
3,929,093	+				-6.5
3,929,197	+		MIT1002_03516	0.12	-1.8
3,929,246	+		MIT1002_03516	0.15	-5.2
3,929,253	+		MIT1002_03516	0.15	-5.0
3,929,283	+		MIT1002_03516	0.17	-5.2
3,929,291	-		MIT1002_03516	0.17	-5.8
3,929,324	+		MIT1002_03516	0.19	-5.3
3,929,420	+		MIT1002_03516	0.24	-5.9
3,929,435	-		MIT1002_03516	0.24	-4.7
3,929,435	-		MIT1002_03516	0.24	-5.1
3,929,494	-		MIT1002_03516	0.27	-3.2
3,929,496	+		MIT1002_03516	0.27	-6.4
3,929,535	-		MIT1002_03516	0.29	-2.4
3,929,549	+		MIT1002_03516	0.30	-2.6
3,929,556	+		MIT1002_03516	0.31	-5.7
3,929,569	-		MIT1002_03516	0.31	-4.3
3,929,607	+		MIT1002_03516	0.33	-3.1
3,929,615	-		MIT1002_03516	0.34	-4.1
3,929,615	-		MIT1002_03516	0.34	-5.2
3,929,711	+		MIT1002_03516	0.39	-2.5
3,929,746	+		MIT1002_03516	0.40	-4.9
3,929,779	+		MIT1002_03516	0.42	-2.5
3,929,959	+		MIT1002_03516	0.51	-2.7
3,929,959	+		MIT1002_03516	0.51	-1.1
3,929,984	+		MIT1002_03516	0.53	-1.6
3,930,037	+		MIT1002_03516	0.55	-3.9
3,930,054	+		MIT1002_03516	0.56	-4.3
3,930,082	+		MIT1002_03516	0.58	-4.5
3,930,088	-		MIT1002_03516	0.58	-2.1
3,930,090	-		MIT1002_03516	0.58	-3.5
3,930,100	+		MIT1002_03516	0.59	-3.3
3,930,109	+		MIT1002_03516	0.59	-2.5
3,930,124	+		MIT1002_03516	0.60	-3.3
3,930,125	-		MIT1002_03516	0.60	-4.7
3,930,133	-		MIT1002_03516	0.60	-4.5
3,930,159	+		MIT1002_03516	0.62	-5.6
3,930,167	-		MIT1002_03516	0.62	-5.4
3,930,177	-		MIT1002_03516	0.62	-4.1
3,930,201	+		MIT1002_03516	0.64	-4.1
3,930,205	-		MIT1002_03516	0.64	-3.7
3,930,226	-		MIT1002_03516	0.65	-5.1
3,930,346	+		MIT1002_03516	0.71	-3.9
3,930,455	+		MIT1002_03516	0.77	-4.5
3,930,463	-		MIT1002_03516	0.77	-5.3
3,930,464	+		MIT1002_03516	0.77	-4.6
3,930,472	-		MIT1002_03516	0.78	-2.1
3,930,559	+		MIT1002_03516	0.82	-3.3
3,930,776	+				-6.0
3,930,777	+				-1.4
3,930,797	-				-1.4
3,930,797	-				-2.4
3,930,797	-				-3.7
3,930,797	-				-1.8
3,930,797	-				-2.6
3,930,797	-				-3.1
3,930,797	-				-3.9
3,930,797	-				-4.2
3,930,798	+				-3.9
3,930,816	-				-1.1
3,930,856	-				-3.2
3,931,004	-				-1.0
3,931,011	+				-0.4
3,931,042	+				-0.7
3,931,042	+				+0.7
3,931,184	+				-3.6
3,931,194	+				-0.4
3,931,202	-				-0.8
3,931,308	-		MIT1002_03517	0.13	-1.2
3,931,308	-		MIT1002_03517	0.13	-1.1
3,931,398	+		MIT1002_03517	0.21	+0.2
3,931,398	+		MIT1002_03517	0.21	-0.0
3,931,398	+		MIT1002_03517	0.21	-2.2
3,931,398	+		MIT1002_03517	0.21	-0.8
3,931,406	-		MIT1002_03517	0.22	-0.1
3,931,406	-		MIT1002_03517	0.22	-1.6
3,931,518	+		MIT1002_03517	0.31	-2.6
3,931,518	+		MIT1002_03517	0.31	-1.1
3,931,518	+		MIT1002_03517	0.31	-2.3
3,931,518	+		MIT1002_03517	0.31	-2.1
3,931,518	+		MIT1002_03517	0.31	-1.5
3,931,518	+		MIT1002_03517	0.31	-1.7
3,931,518	+		MIT1002_03517	0.31	-1.2
3,931,518	+		MIT1002_03517	0.31	-3.2
3,931,518	+		MIT1002_03517	0.31	-0.6
3,931,518	+		MIT1002_03517	0.31	-1.4
3,931,518	+		MIT1002_03517	0.31	-1.5
3,931,518	+		MIT1002_03517	0.31	-1.5
3,931,518	+		MIT1002_03517	0.31	-0.3
3,931,518	+		MIT1002_03517	0.31	-2.3
3,931,518	+		MIT1002_03517	0.31	-1.6
3,931,518	+		MIT1002_03517	0.31	-0.3
3,931,518	+		MIT1002_03517	0.31	-1.1
3,931,518	+		MIT1002_03517	0.31	-4.7
3,931,526	-		MIT1002_03517	0.32	-2.9
3,931,526	-		MIT1002_03517	0.32	-2.8
3,931,526	-		MIT1002_03517	0.32	-2.3
3,931,526	-		MIT1002_03517	0.32	+0.2
3,931,526	-		MIT1002_03517	0.32	-2.4
3,931,526	-		MIT1002_03517	0.32	-1.4
3,931,526	-		MIT1002_03517	0.32	-2.4
3,931,526	-		MIT1002_03517	0.32	+0.4
3,931,526	-		MIT1002_03517	0.32	+0.7
3,931,526	-		MIT1002_03517	0.32	-2.1
3,931,526	-		MIT1002_03517	0.32	+0.0
3,931,526	-		MIT1002_03517	0.32	-1.1
3,931,526	-		MIT1002_03517	0.32	-1.4
3,931,526	-		MIT1002_03517	0.32	-0.5
3,931,526	-		MIT1002_03517	0.32	-0.9
3,931,560	+		MIT1002_03517	0.35	-2.6
3,931,588	+		MIT1002_03517	0.37	-0.8
3,931,596	-		MIT1002_03517	0.38	-1.0
3,931,659	-		MIT1002_03517	0.43	+1.3
3,931,666	+		MIT1002_03517	0.44	-0.6
3,931,666	+		MIT1002_03517	0.44	-1.4
3,931,683	-		MIT1002_03517	0.46	-1.0
3,931,732	-		MIT1002_03517	0.50	-2.1
3,931,742	-		MIT1002_03517	0.51	+0.8
3,931,770	-		MIT1002_03517	0.53	-0.8
3,931,782	-		MIT1002_03517	0.54	-0.6
3,931,800	-		MIT1002_03517	0.56	-1.2
3,931,892	+		MIT1002_03517	0.63	-0.8