Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03186

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
3,549,243	+		MIT1002_03185	0.12	-4.1
3,549,386	+		MIT1002_03185	0.26	-1.3
3,549,393	-		MIT1002_03185	0.26	-2.5
3,549,418	+		MIT1002_03185	0.29	-2.9
3,549,418	+		MIT1002_03185	0.29	-2.3
3,549,426	-		MIT1002_03185	0.29	-3.0
3,549,494	+		MIT1002_03185	0.36	-2.0
3,549,494	+		MIT1002_03185	0.36	-2.6
3,549,494	+		MIT1002_03185	0.36	-2.7
3,549,502	-		MIT1002_03185	0.36	-3.5
3,549,502	-		MIT1002_03185	0.36	-1.3
3,549,502	-		MIT1002_03185	0.36	-1.8
3,549,565	+		MIT1002_03185	0.42	-2.8
3,549,611	-		MIT1002_03185	0.46	-1.9
3,549,625	+		MIT1002_03185	0.48	-4.3
3,549,625	+		MIT1002_03185	0.48	-4.1
3,549,633	-		MIT1002_03185	0.48	-3.3
3,549,633	-		MIT1002_03185	0.48	-1.4
3,549,633	-		MIT1002_03185	0.48	-2.3
3,549,635	+		MIT1002_03185	0.49	-1.7
3,549,774	+		MIT1002_03185	0.61	-2.7
3,549,791	+		MIT1002_03185	0.63	-2.1
3,549,793	+		MIT1002_03185	0.63	-1.9
3,549,796	-		MIT1002_03185	0.63	-1.8
3,549,839	+		MIT1002_03185	0.67	-3.6
3,549,839	+		MIT1002_03185	0.67	-1.4
3,549,845	-		MIT1002_03185	0.68	-1.0
3,549,888	-		MIT1002_03185	0.72	-3.0
3,550,062	-		MIT1002_03185	0.88	-3.8
3,550,084	+		MIT1002_03185	0.90	-1.9
3,550,126	+				-0.5
3,550,129	-				-0.8
3,550,129	-				-2.0
3,550,380	+		MIT1002_03186	0.14	-2.0
3,550,390	+		MIT1002_03186	0.15	-2.3
3,550,441	+		MIT1002_03186	0.18	-4.5
3,550,441	+		MIT1002_03186	0.18	-4.0
3,550,441	+		MIT1002_03186	0.18	-3.2
3,550,441	+		MIT1002_03186	0.18	-1.1
3,550,441	+		MIT1002_03186	0.18	-3.1
3,550,441	+		MIT1002_03186	0.18	-0.7
3,550,449	-		MIT1002_03186	0.19	-3.4
3,550,515	+		MIT1002_03186	0.24	-0.8
3,550,523	+		MIT1002_03186	0.24	-2.0
3,550,531	-		MIT1002_03186	0.25	-2.3
3,550,531	-		MIT1002_03186	0.25	-3.6
3,550,558	-		MIT1002_03186	0.27	-2.5
3,550,558	-		MIT1002_03186	0.27	-2.0
3,550,590	-		MIT1002_03186	0.29	-3.6
3,550,710	-		MIT1002_03186	0.37	-2.9
3,550,748	-		MIT1002_03186	0.40	-2.7
3,550,949	+		MIT1002_03186	0.54	-3.1
3,550,997	+		MIT1002_03186	0.58	-2.1
3,550,997	+		MIT1002_03186	0.58	-2.4
3,550,997	+		MIT1002_03186	0.58	-2.9
3,550,997	+		MIT1002_03186	0.58	-4.3
3,551,005	-		MIT1002_03186	0.58	-3.0
3,551,260	-		MIT1002_03186	0.76	-2.8
3,551,311	+		MIT1002_03186	0.80	-2.8
3,551,494	+				-1.0
3,551,512	-				-2.7
3,551,541	-				-0.2
3,551,586	+				+0.5
3,551,586	+				+1.3
3,551,636	+				+1.4
3,551,658	-				-0.6
3,551,680	+				-2.2
3,551,699	+				+1.8
3,551,699	+				-0.3
3,551,704	+				+0.1
3,551,707	-				+0.2
3,551,731	-				-0.3
3,551,942	+		MIT1002_03187	0.25	+1.0
3,551,950	-		MIT1002_03187	0.26	-0.4
3,551,950	-		MIT1002_03187	0.26	+0.8
3,551,976	-		MIT1002_03187	0.28	-0.2
3,551,986	-		MIT1002_03187	0.29	+0.5
3,551,986	-		MIT1002_03187	0.29	-0.7
3,551,986	-		MIT1002_03187	0.29	+0.0
3,552,044	-		MIT1002_03187	0.34	-0.1
3,552,166	+		MIT1002_03187	0.45	-0.4
3,552,169	-		MIT1002_03187	0.45	+2.2
3,552,181	-		MIT1002_03187	0.46	-1.2
3,552,185	+		MIT1002_03187	0.46	+0.5
3,552,185	+		MIT1002_03187	0.46	+0.2
3,552,193	-		MIT1002_03187	0.47	-0.0
3,552,193	-		MIT1002_03187	0.47	+0.7
3,552,193	-		MIT1002_03187	0.47	-0.6
3,552,193	-		MIT1002_03187	0.47	-0.0
3,552,314	-		MIT1002_03187	0.58	-1.9
3,552,482	+		MIT1002_03187	0.73	+0.5
3,552,492	+		MIT1002_03187	0.73	-0.1
3,552,500	-		MIT1002_03187	0.74	+0.3
3,552,500	-		MIT1002_03187	0.74	+0.4
3,552,501	+		MIT1002_03187	0.74	+0.4
3,552,523	+		MIT1002_03187	0.76	+0.5
3,552,536	+		MIT1002_03187	0.77	+0.4
3,552,545	-		MIT1002_03187	0.78	-4.0