Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03040

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
3,390,050	-		MIT1002_03039	0.44	-0.9
3,390,050	-		MIT1002_03039	0.44	+1.3
3,390,050	-		MIT1002_03039	0.44	-1.2
3,390,083	-		MIT1002_03039	0.45	-0.6
3,390,189	+		MIT1002_03039	0.51	-0.7
3,390,197	-		MIT1002_03039	0.52	-0.8
3,390,199	+		MIT1002_03039	0.52	-0.8
3,390,199	+		MIT1002_03039	0.52	-0.3
3,390,207	-		MIT1002_03039	0.52	-1.0
3,390,209	+		MIT1002_03039	0.53	-0.2
3,390,209	+		MIT1002_03039	0.53	+0.6
3,390,211	+		MIT1002_03039	0.53	-0.2
3,390,217	-		MIT1002_03039	0.53	-0.1
3,390,217	-		MIT1002_03039	0.53	+0.9
3,390,217	-		MIT1002_03039	0.53	+1.0
3,390,219	-		MIT1002_03039	0.53	-1.0
3,390,229	+		MIT1002_03039	0.54	-0.8
3,390,229	+		MIT1002_03039	0.54	-0.2
3,390,229	+		MIT1002_03039	0.54	-1.6
3,390,237	-		MIT1002_03039	0.54	+0.4
3,390,237	-		MIT1002_03039	0.54	-0.9
3,390,271	+		MIT1002_03039	0.56	+0.5
3,390,286	-		MIT1002_03039	0.57	-0.3
3,390,369	+		MIT1002_03039	0.62	+0.3
3,390,377	+		MIT1002_03039	0.62	-1.0
3,390,377	+		MIT1002_03039	0.62	-2.5
3,390,385	+		MIT1002_03039	0.63	+0.4
3,390,467	+		MIT1002_03039	0.67	+0.2
3,390,475	-		MIT1002_03039	0.68	-2.0
3,390,477	+		MIT1002_03039	0.68	+0.2
3,390,520	-		MIT1002_03039	0.70	+1.2
3,390,565	-		MIT1002_03039	0.73	-2.2
3,390,575	-		MIT1002_03039	0.73	+0.2
3,390,624	-		MIT1002_03039	0.76	+0.1
3,390,627	+		MIT1002_03039	0.76	-2.2
3,390,634	-		MIT1002_03039	0.77	+0.1
3,390,635	-		MIT1002_03039	0.77	+0.3
3,390,656	+		MIT1002_03039	0.78	+0.4
3,390,659	+		MIT1002_03039	0.78	+0.1
3,390,664	-		MIT1002_03039	0.78	-0.1
3,390,667	-		MIT1002_03039	0.79	+0.3
3,390,692	+		MIT1002_03039	0.80	+0.6
3,390,706	-		MIT1002_03039	0.81	+0.1
3,390,765	-		MIT1002_03039	0.84	-0.5
3,390,785	-		MIT1002_03039	0.85	-0.2
3,390,799	+		MIT1002_03039	0.86	-1.2
3,390,826	-		MIT1002_03039	0.88	+0.8
3,390,883	+				-0.1
3,390,889	+				-0.1
3,390,923	-				+0.7
3,390,939	-				-1.6
3,390,946	-				+0.8
3,390,992	+				+0.5
3,390,992	+				-0.6
3,391,000	-				+0.6
3,391,015	+				+0.1
3,391,169	+				-0.6
3,391,209	+		MIT1002_03040	0.11	+0.3
3,391,209	+		MIT1002_03040	0.11	-0.2
3,391,210	+		MIT1002_03040	0.11	-0.5
3,391,217	-		MIT1002_03040	0.12	+0.9
3,391,292	+		MIT1002_03040	0.17	+0.5
3,391,489	+		MIT1002_03040	0.31	-0.4
3,391,603	+		MIT1002_03040	0.39	+0.4
3,391,605	-		MIT1002_03040	0.39	+1.2
3,391,605	-		MIT1002_03040	0.39	-1.0
3,391,680	+		MIT1002_03040	0.44	+0.4
3,391,680	+		MIT1002_03040	0.44	-1.6
3,391,688	-		MIT1002_03040	0.45	+0.7
3,391,729	-		MIT1002_03040	0.48	-0.1
3,391,743	+		MIT1002_03040	0.49	-1.3
3,391,756	-		MIT1002_03040	0.50	+0.5
3,391,775	-		MIT1002_03040	0.51	-1.0
3,391,889	-		MIT1002_03040	0.59	+0.5
3,391,935	+		MIT1002_03040	0.62	-0.4
3,391,985	+		MIT1002_03040	0.66	+0.2
3,391,985	+		MIT1002_03040	0.66	-0.3
3,391,993	-		MIT1002_03040	0.66	-0.5
3,391,993	-		MIT1002_03040	0.66	-0.2
3,391,993	-		MIT1002_03040	0.66	+0.8
3,391,993	-		MIT1002_03040	0.66	+0.4
3,391,995	+		MIT1002_03040	0.66	-1.0
3,391,995	+		MIT1002_03040	0.66	-0.6
3,391,995	+		MIT1002_03040	0.66	-0.1
3,392,003	-		MIT1002_03040	0.67	+0.7
3,392,003	-		MIT1002_03040	0.67	-0.4
3,392,015	+		MIT1002_03040	0.68	-0.4
3,392,015	+		MIT1002_03040	0.68	+0.0
3,392,015	+		MIT1002_03040	0.68	-0.6
3,392,017	-		MIT1002_03040	0.68	+0.5
3,392,023	-		MIT1002_03040	0.68	+0.6
3,392,023	-		MIT1002_03040	0.68	+0.2
3,392,074	+		MIT1002_03040	0.72	+0.6
3,392,074	+		MIT1002_03040	0.72	-0.2
3,392,074	+		MIT1002_03040	0.72	-0.1
3,392,074	+		MIT1002_03040	0.72	-0.2
3,392,082	-		MIT1002_03040	0.73	+0.1
3,392,082	-		MIT1002_03040	0.73	+1.2
3,392,082	-		MIT1002_03040	0.73	-0.2
3,392,098	+		MIT1002_03040	0.74	+0.1
3,392,106	-		MIT1002_03040	0.74	+1.1
3,392,163	-		MIT1002_03040	0.78	-0.2
3,392,163	-		MIT1002_03040	0.78	-0.6
3,392,204	-		MIT1002_03040	0.81	-0.5
3,392,204	-		MIT1002_03040	0.81	-0.4
3,392,209	+		MIT1002_03040	0.82	-0.4
3,392,284	+		MIT1002_03040	0.87	+1.2
3,392,316	+		MIT1002_03040	0.89	+0.2
3,392,333	+				+0.2
3,392,333	+				-0.5
3,392,333	+				-1.1
3,392,333	+				-1.6
3,392,333	+				-0.7
3,392,333	+				-0.2
3,392,333	+				-0.9
3,392,333	+				-0.2
3,392,333	+				+0.3
3,392,341	-				+0.0
3,392,341	-				+0.2
3,392,341	-				-0.1
3,392,341	-				+0.0
3,392,341	-				-1.1
3,392,355	+				+2.0
3,392,500	+				-0.3
3,392,500	+				-1.2
3,392,500	+				-0.1
3,392,508	-				+0.9
3,392,511	+				-0.2
3,392,561	-				+0.3
3,392,561	-				+0.3
3,392,657	+				+1.3
3,392,709	+		MIT1002_03041	0.10	+1.9
3,392,709	+		MIT1002_03041	0.10	-0.6
3,392,709	+		MIT1002_03041	0.10	+1.6
3,392,709	+		MIT1002_03041	0.10	+0.2
3,392,709	+		MIT1002_03041	0.10	+0.5
3,392,803	+		MIT1002_03041	0.30	+0.1
3,392,803	+		MIT1002_03041	0.30	+1.7
3,392,811	-		MIT1002_03041	0.32	+0.4
3,392,882	+		MIT1002_03041	0.47	-0.4
3,392,882	+		MIT1002_03041	0.47	-0.6
3,392,890	-		MIT1002_03041	0.49	-2.2
3,392,890	-		MIT1002_03041	0.49	+0.1
3,392,890	-		MIT1002_03041	0.49	+0.3
3,392,902	+		MIT1002_03041	0.51	-0.7
3,392,918	+		MIT1002_03041	0.54	+0.3
3,392,924	-		MIT1002_03041	0.56	-0.8
3,392,925	+		MIT1002_03041	0.56	+0.2
3,393,100	+				-0.7
3,393,132	+				+0.0
3,393,140	-				-0.0
3,393,142	+				-0.7
3,393,142	+				+0.0
3,393,150	-				-1.6
3,393,150	-				+0.2
3,393,171	+				-1.3
3,393,172	+				-1.4
3,393,173	+				-0.3
3,393,173	+				+0.3
3,393,181	-				+0.4
3,393,188	+				-2.0
3,393,196	-				-0.1
3,393,196	-				+0.4
3,393,215	+				-0.4
3,393,247	-				+0.7
3,393,310	-				-0.1
3,393,320	-				-0.8
3,393,320	-				-0.5
3,393,330	+				-2.4
3,393,386	+				+0.7
3,393,394	-				+0.1
3,393,400	+				+1.3
3,393,426	-				-1.2
3,393,426	-				-1.1
3,393,426	-				+0.0
3,393,433	-				+0.3