Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02973

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
3,309,762	+		MIT1002_02971	0.85	-2.0
3,309,770	-		MIT1002_02971	0.85	-3.0
3,309,775	-		MIT1002_02971	0.86	-3.8
3,309,848	-		MIT1002_02971	0.88	-3.7
3,309,848	-		MIT1002_02971	0.88	-3.6
3,309,867	-		MIT1002_02971	0.89	-2.0
3,309,867	-		MIT1002_02971	0.89	-3.5
3,309,968	+				-1.0
3,310,011	-				-3.1
3,310,021	-				-2.7
3,310,033	+				-3.7
3,310,054	-				-1.3
3,310,059	+				+0.7
3,310,067	-				-3.7
3,310,116	-				-2.0
3,310,133	-				-2.2
3,310,163	+				-3.6
3,310,171	-				-1.5
3,310,199	+				-1.0
3,310,217	-				-0.9
3,310,222	+				-2.5
3,310,230	-				-1.1
3,310,361	+		MIT1002_02972	0.12	-2.5
3,310,415	+		MIT1002_02972	0.25	-5.4
3,310,425	+		MIT1002_02972	0.28	-2.3
3,310,433	-		MIT1002_02972	0.30	-3.9
3,310,453	-		MIT1002_02972	0.35	-2.4
3,310,456	-		MIT1002_02972	0.36	-1.3
3,310,644	-		MIT1002_02972	0.84	-3.7
3,310,652	-		MIT1002_02972	0.86	-2.8
3,310,652	-		MIT1002_02972	0.86	-1.8
3,310,689	+				-2.4
3,310,868	-		MIT1002_02973	0.13	-1.6
3,310,874	-		MIT1002_02973	0.13	-2.5
3,310,879	-		MIT1002_02973	0.14	-2.5
3,311,023	+		MIT1002_02973	0.27	-3.0
3,311,110	+		MIT1002_02973	0.35	-1.0
3,311,145	+		MIT1002_02973	0.38	-3.9
3,311,145	+		MIT1002_02973	0.38	-3.1
3,311,145	+		MIT1002_02973	0.38	-3.3
3,311,153	-		MIT1002_02973	0.39	-3.3
3,311,153	-		MIT1002_02973	0.39	-4.8
3,311,205	+		MIT1002_02973	0.44	-3.2
3,311,242	+		MIT1002_02973	0.47	-1.0
3,311,242	+		MIT1002_02973	0.47	-0.6
3,311,255	-		MIT1002_02973	0.48	-3.1
3,311,263	+		MIT1002_02973	0.49	-3.0
3,311,271	-		MIT1002_02973	0.50	-2.5
3,311,276	-		MIT1002_02973	0.50	-1.3
3,311,327	+		MIT1002_02973	0.55	-3.2
3,311,327	+		MIT1002_02973	0.55	-1.6
3,311,332	+		MIT1002_02973	0.56	-3.6
3,311,332	+		MIT1002_02973	0.56	-1.0
3,311,332	+		MIT1002_02973	0.56	-3.9
3,311,332	+		MIT1002_02973	0.56	-3.0
3,311,332	+		MIT1002_02973	0.56	-3.7
3,311,332	+		MIT1002_02973	0.56	-3.4
3,311,335	-		MIT1002_02973	0.56	-3.6
3,311,412	+		MIT1002_02973	0.63	-0.9
3,311,412	+		MIT1002_02973	0.63	-2.3
3,311,412	+		MIT1002_02973	0.63	+1.0
3,311,412	+		MIT1002_02973	0.63	-3.7
3,311,496	+		MIT1002_02973	0.71	-4.4
3,311,503	+		MIT1002_02973	0.71	-1.7
3,311,557	+		MIT1002_02973	0.76	-3.9
3,311,557	+		MIT1002_02973	0.76	-4.5
3,311,557	+		MIT1002_02973	0.76	-4.3
3,311,557	+		MIT1002_02973	0.76	-4.3
3,311,557	+		MIT1002_02973	0.76	-1.0
3,311,565	-		MIT1002_02973	0.77	-0.9
3,311,565	-		MIT1002_02973	0.77	-2.1
3,311,565	-		MIT1002_02973	0.77	-1.3
3,311,608	+		MIT1002_02973	0.81	-2.9
3,311,608	+		MIT1002_02973	0.81	-0.7
3,311,621	+		MIT1002_02973	0.82	-1.2
3,311,661	-		MIT1002_02973	0.86	-2.4
3,311,665	-		MIT1002_02973	0.86	-1.3
3,311,704	-				-1.6
3,311,740	-				-2.1
3,311,809	-				-2.9
3,312,075	+		MIT1002_02974	0.14	-0.1
3,312,094	-		MIT1002_02974	0.16	-0.3
3,312,123	+		MIT1002_02974	0.20	-1.3
3,312,204	+		MIT1002_02974	0.29	+0.1
3,312,204	+		MIT1002_02974	0.29	+0.0
3,312,204	+		MIT1002_02974	0.29	-0.2
3,312,212	-		MIT1002_02974	0.30	-1.2
3,312,212	-		MIT1002_02974	0.30	-0.1
3,312,218	+		MIT1002_02974	0.31	+0.2
3,312,218	-		MIT1002_02974	0.31	+0.1
3,312,218	-		MIT1002_02974	0.31	+1.2
3,312,218	-		MIT1002_02974	0.31	-0.7
3,312,237	+		MIT1002_02974	0.33	+0.0
3,312,286	-		MIT1002_02974	0.39	-0.7
3,312,301	+		MIT1002_02974	0.41	-0.7
3,312,301	+		MIT1002_02974	0.41	-0.5
3,312,309	-		MIT1002_02974	0.42	-0.7
3,312,314	-		MIT1002_02974	0.42	+1.4
3,312,335	+		MIT1002_02974	0.45	-1.4
3,312,343	-		MIT1002_02974	0.46	+1.1
3,312,417	+		MIT1002_02974	0.55	+0.7
3,312,467	+		MIT1002_02974	0.60	+0.6
3,312,515	+		MIT1002_02974	0.66	-0.4
3,312,545	-		MIT1002_02974	0.70	-0.7
3,312,626	+		MIT1002_02974	0.79	+1.5
3,312,635	-		MIT1002_02974	0.80	-0.1
3,312,635	-		MIT1002_02974	0.80	+0.5
3,312,635	-		MIT1002_02974	0.80	+0.5
3,312,712	+		MIT1002_02974	0.89	-0.6
3,312,712	+		MIT1002_02974	0.89	-1.3
3,312,720	-				-0.3