Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_02147 and MIT1002_02148 are separated by 74 nucleotides MIT1002_02148 and MIT1002_02149 are separated by 128 nucleotides MIT1002_02149 and MIT1002_02150 are separated by 59 nucleotides MIT1002_02150 and MIT1002_02151 are separated by 41 nucleotides MIT1002_02151 and MIT1002_02152 are separated by 169 nucleotides
MIT1002_02147: MIT1002_02147 - putative thiol peroxidase, at 2,406,698 to 2,407,195
_02147
MIT1002_02148: MIT1002_02148 - hypothetical protein, at 2,407,270 to 2,407,962
_02148
MIT1002_02149: MIT1002_02149 - tRNA-Leu, at 2,408,091 to 2,408,177
_02149
MIT1002_02150: MIT1002_02150 - tRNA-Cys, at 2,408,237 to 2,408,310
_02150
MIT1002_02151: MIT1002_02151 - tRNA-Gly, at 2,408,352 to 2,408,427
_02151
MIT1002_02152: MIT1002_02152 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,408,597 to 2,409,169
_02152
Position (kb)
2408
2409 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2407.126 kb on - strand, within MIT1002_02147 at 2407.131 kb on - strand, within MIT1002_02147 at 2407.306 kb on - strand at 2407.364 kb on - strand, within MIT1002_02148 at 2407.376 kb on + strand, within MIT1002_02148 at 2407.395 kb on + strand, within MIT1002_02148 at 2407.395 kb on + strand, within MIT1002_02148 at 2407.398 kb on - strand, within MIT1002_02148 at 2407.423 kb on + strand, within MIT1002_02148 at 2407.624 kb on + strand, within MIT1002_02148 at 2407.632 kb on - strand, within MIT1002_02148 at 2407.944 kb on - strand at 2407.952 kb on - strand at 2408.085 kb on + strand at 2408.628 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2 remove 2,407,126 - MIT1002_02147 0.86 +0.3 2,407,131 - MIT1002_02147 0.87 -0.0 2,407,306 - +2.2 2,407,364 - MIT1002_02148 0.14 -0.5 2,407,376 + MIT1002_02148 0.15 -0.2 2,407,395 + MIT1002_02148 0.18 +0.0 2,407,395 + MIT1002_02148 0.18 -0.3 2,407,398 - MIT1002_02148 0.18 +1.0 2,407,423 + MIT1002_02148 0.22 -0.2 2,407,624 + MIT1002_02148 0.51 +0.4 2,407,632 - MIT1002_02148 0.52 -0.5 2,407,944 - +0.3 2,407,952 - +1.1 2,408,085 + +0.4 2,408,628 - -3.0
Or see this region's nucleotide sequence