Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02033

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
2,277,331	+		MIT1002_02032	0.17	+1.0
2,277,427	-		MIT1002_02032	0.26	-2.6
2,277,455	+		MIT1002_02032	0.29	-0.1
2,277,551	+		MIT1002_02032	0.38	+0.1
2,277,605	+		MIT1002_02032	0.43	+1.0
2,277,607	-		MIT1002_02032	0.43	-1.1
2,277,706	-		MIT1002_02032	0.53	-1.9
2,277,717	+		MIT1002_02032	0.54	-0.2
2,277,739	+		MIT1002_02032	0.56	-0.2
2,277,764	+		MIT1002_02032	0.58	-0.2
2,277,805	+		MIT1002_02032	0.62	-0.8
2,277,805	+		MIT1002_02032	0.62	-1.5
2,277,813	-		MIT1002_02032	0.63	+0.9
2,277,813	-		MIT1002_02032	0.63	+1.0
2,277,878	-		MIT1002_02032	0.69	+1.5
2,277,933	-		MIT1002_02032	0.74	-0.8
2,277,977	-		MIT1002_02032	0.79	-1.6
2,278,005	+		MIT1002_02032	0.81	+1.1
2,278,013	-		MIT1002_02032	0.82	-1.2
2,278,064	-		MIT1002_02032	0.87	-0.6
2,278,064	-		MIT1002_02032	0.87	-0.4
2,278,131	+				+0.3
2,278,139	-				-0.6
2,278,139	-				+0.0
2,278,139	-				-0.8
2,278,139	-				-0.6
2,278,161	+				-0.1
2,278,377	+				-0.1
2,278,481	-		MIT1002_02033	0.11	-0.9
2,278,490	+		MIT1002_02033	0.12	-2.8
2,278,519	-		MIT1002_02033	0.13	-0.7
2,278,547	+		MIT1002_02033	0.14	-0.5
2,278,697	+		MIT1002_02033	0.21	+0.9
2,278,697	+		MIT1002_02033	0.21	-0.3
2,278,705	-		MIT1002_02033	0.21	-1.4
2,278,705	-		MIT1002_02033	0.21	-0.2
2,278,705	-		MIT1002_02033	0.21	+0.8
2,278,705	-		MIT1002_02033	0.21	-0.1
2,278,742	-		MIT1002_02033	0.23	-0.8
2,278,757	-		MIT1002_02033	0.23	-0.5
2,278,759	+		MIT1002_02033	0.23	-1.6
2,278,762	+		MIT1002_02033	0.24	+0.1
2,278,762	+		MIT1002_02033	0.24	+1.1
2,278,878	+		MIT1002_02033	0.29	+0.4
2,278,946	-		MIT1002_02033	0.31	-0.9
2,278,961	-		MIT1002_02033	0.32	+0.2
2,279,084	+		MIT1002_02033	0.37	-1.2
2,279,092	-		MIT1002_02033	0.38	-1.3
2,279,092	-		MIT1002_02033	0.38	-0.1
2,279,097	+		MIT1002_02033	0.38	-0.2
2,279,113	-		MIT1002_02033	0.39	+0.2
2,279,144	-		MIT1002_02033	0.40	-2.9
2,279,225	-		MIT1002_02033	0.43	-0.9
2,279,232	+		MIT1002_02033	0.44	+0.4
2,279,240	-		MIT1002_02033	0.44	-1.2
2,279,289	+		MIT1002_02033	0.46	+0.6
2,279,330	+		MIT1002_02033	0.48	-1.1
2,279,343	-		MIT1002_02033	0.49	-0.1
2,279,535	+		MIT1002_02033	0.57	+0.6
2,279,535	+		MIT1002_02033	0.57	+0.8
2,279,539	-		MIT1002_02033	0.57	-2.0
2,279,593	+		MIT1002_02033	0.59	+0.8
2,279,644	+		MIT1002_02033	0.62	-1.2
2,279,644	+		MIT1002_02033	0.62	+1.3
2,279,644	+		MIT1002_02033	0.62	+0.3
2,279,652	-		MIT1002_02033	0.62	-0.3
2,279,652	-		MIT1002_02033	0.62	+2.2
2,279,665	+		MIT1002_02033	0.62	+1.0
2,279,669	-		MIT1002_02033	0.63	-1.2
2,279,704	+		MIT1002_02033	0.64	-0.4
2,279,712	-		MIT1002_02033	0.64	+0.4
2,279,774	+		MIT1002_02033	0.67	+0.5
2,279,855	-		MIT1002_02033	0.71	-0.5
2,279,879	-		MIT1002_02033	0.72	-1.4
2,279,883	+		MIT1002_02033	0.72	+1.2
2,279,891	-		MIT1002_02033	0.72	-1.1
2,279,913	-		MIT1002_02033	0.73	-1.6
2,279,958	-		MIT1002_02033	0.75	+0.5
2,279,963	-		MIT1002_02033	0.75	+0.0
2,279,993	+		MIT1002_02033	0.77	+0.3
2,280,008	+		MIT1002_02033	0.77	+0.0
2,280,034	+		MIT1002_02033	0.78	+0.8
2,280,044	+		MIT1002_02033	0.79	-0.6
2,280,044	+		MIT1002_02033	0.79	-1.9
2,280,044	+		MIT1002_02033	0.79	-1.6
2,280,044	+		MIT1002_02033	0.79	+0.4
2,280,047	-		MIT1002_02033	0.79	-0.5
2,280,052	-		MIT1002_02033	0.79	-0.5
2,280,054	+		MIT1002_02033	0.79	-3.6
2,280,069	-		MIT1002_02033	0.80	-1.1
2,280,122	+		MIT1002_02033	0.82	-2.6
2,280,156	+		MIT1002_02033	0.84	-1.4
2,280,170	+		MIT1002_02033	0.84	+0.3
2,280,170	+		MIT1002_02033	0.84	-0.2
2,280,171	+		MIT1002_02033	0.84	+0.0
2,280,235	+		MIT1002_02033	0.87	-0.1
2,280,235	+		MIT1002_02033	0.87	-1.2
2,280,235	+		MIT1002_02033	0.87	-0.1
2,280,242	+		MIT1002_02033	0.87	-0.1
2,280,242	+		MIT1002_02033	0.87	-0.6
2,280,243	-		MIT1002_02033	0.87	+0.8
2,280,243	-		MIT1002_02033	0.87	-0.6
2,280,348	-				-0.2
2,280,348	-				-0.1
2,280,353	-				+1.5
2,280,371	-				-0.9
2,280,375	+				-0.6
2,280,381	-				+0.1
2,280,383	-				+0.2
2,280,400	-				-1.3
2,280,747	+				-1.0
2,280,754	+				-0.7
2,280,755	-				-0.4
2,280,901	+				-0.2
2,280,961	-				-0.7
2,281,046	+				+0.4
2,281,064	-				-0.9
2,281,082	-				-0.1
2,281,143	+				-0.9
2,281,143	+				-1.6
2,281,149	-				+0.9
2,281,252	+		MIT1002_02034	0.11	-0.8
2,281,260	-		MIT1002_02034	0.11	-1.4
2,281,265	-		MIT1002_02034	0.11	-0.9
2,281,293	+		MIT1002_02034	0.12	+0.2
2,281,473	+		MIT1002_02034	0.15	-1.1