Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02014

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
2,254,129	+				+0.1
2,254,160	-				-3.8
2,254,170	-				-2.2
2,254,170	-				-2.2
2,254,219	+		MIT1002_02013	0.10	-3.4
2,254,227	-		MIT1002_02013	0.11	-1.5
2,254,231	+		MIT1002_02013	0.11	-2.8
2,254,341	+		MIT1002_02013	0.22	-2.1
2,254,341	+		MIT1002_02013	0.22	-3.5
2,254,349	-		MIT1002_02013	0.23	-0.3
2,254,352	-		MIT1002_02013	0.24	-2.1
2,254,415	+		MIT1002_02013	0.30	-1.1
2,254,475	+		MIT1002_02013	0.36	-1.7
2,254,531	-		MIT1002_02013	0.42	-3.4
2,254,547	+		MIT1002_02013	0.44	-1.8
2,254,547	+		MIT1002_02013	0.44	-1.0
2,254,547	+		MIT1002_02013	0.44	-2.3
2,254,550	-		MIT1002_02013	0.44	-2.9
2,254,555	-		MIT1002_02013	0.44	-1.3
2,254,565	-		MIT1002_02013	0.45	-3.3
2,254,566	+		MIT1002_02013	0.46	+0.0
2,254,590	-		MIT1002_02013	0.48	-1.8
2,254,590	-		MIT1002_02013	0.48	-1.9
2,254,597	-		MIT1002_02013	0.49	-2.4
2,254,647	-		MIT1002_02013	0.54	-3.8
2,254,673	-		MIT1002_02013	0.56	-1.2
2,254,796	+		MIT1002_02013	0.69	-2.5
2,254,836	+		MIT1002_02013	0.73	-0.4
2,254,846	-		MIT1002_02013	0.74	-3.3
2,254,862	+		MIT1002_02013	0.76	-3.8
2,254,921	-		MIT1002_02013	0.82	-2.9
2,254,997	+		MIT1002_02013	0.90	-2.6
2,255,012	-				-1.5
2,255,072	+				-0.2
2,255,095	-				-2.1
2,255,100	-				-3.2
2,255,152	+				-1.8
2,255,158	-				-2.2
2,255,177	-				-3.4
2,255,201	-				-3.0
2,255,237	-				-1.4
2,255,336	-		MIT1002_02014	0.13	-3.1
2,255,352	-		MIT1002_02014	0.14	-3.1
2,255,360	+		MIT1002_02014	0.14	-2.7
2,255,501	+		MIT1002_02014	0.23	-1.5
2,255,631	+		MIT1002_02014	0.30	-1.5
2,255,708	+		MIT1002_02014	0.35	-1.3
2,255,716	-		MIT1002_02014	0.35	-1.5
2,255,775	-		MIT1002_02014	0.39	-2.8
2,255,891	-		MIT1002_02014	0.46	-1.2
2,255,897	-		MIT1002_02014	0.46	-1.9
2,255,897	-		MIT1002_02014	0.46	-2.7
2,255,991	-		MIT1002_02014	0.51	-2.3
2,256,053	+		MIT1002_02014	0.55	-2.8
2,256,062	-		MIT1002_02014	0.56	-1.2
2,256,088	+		MIT1002_02014	0.57	-1.4
2,256,109	-		MIT1002_02014	0.58	-4.1
2,256,109	-		MIT1002_02014	0.58	-0.1
2,256,173	+		MIT1002_02014	0.62	-2.7
2,256,183	+		MIT1002_02014	0.63	-2.7
2,256,191	+		MIT1002_02014	0.63	-0.8
2,256,191	-		MIT1002_02014	0.63	-1.3
2,256,191	-		MIT1002_02014	0.63	-3.3
2,256,218	+		MIT1002_02014	0.65	-1.8
2,256,245	+		MIT1002_02014	0.66	-1.2
2,256,307	-		MIT1002_02014	0.70	-2.7
2,256,338	+		MIT1002_02014	0.72	-2.8
2,256,387	+		MIT1002_02014	0.75	-1.8
2,256,506	+		MIT1002_02014	0.82	-2.5
2,256,506	+		MIT1002_02014	0.82	-3.8
2,256,506	+		MIT1002_02014	0.82	-2.2
2,256,506	+		MIT1002_02014	0.82	-2.1
2,256,514	-		MIT1002_02014	0.82	-3.4
2,256,514	-		MIT1002_02014	0.82	-4.0
2,256,514	-		MIT1002_02014	0.82	-2.8
2,256,514	-		MIT1002_02014	0.82	-3.4
2,256,514	-		MIT1002_02014	0.82	-3.5
2,256,514	-		MIT1002_02014	0.82	-4.1
2,256,536	+		MIT1002_02014	0.84	-2.5
2,256,536	+		MIT1002_02014	0.84	-2.1
2,256,544	-		MIT1002_02014	0.84	-0.5
2,256,544	-		MIT1002_02014	0.84	-2.0
2,256,544	-		MIT1002_02014	0.84	-1.0
2,256,544	-		MIT1002_02014	0.84	-2.6
2,256,544	-		MIT1002_02014	0.84	-5.2
2,256,659	-				-1.7
2,256,673	-				-3.1
2,256,722	+				-2.5
2,256,904	-				+0.6
2,256,971	+				-0.1
2,256,983	+				-0.8
2,256,991	-				+1.1
2,257,009	-				-0.6
2,257,099	+		MIT1002_02015	0.15	-0.8
2,257,102	-		MIT1002_02015	0.16	-0.6
2,257,146	+		MIT1002_02015	0.21	-1.1
2,257,186	+		MIT1002_02015	0.25	+0.6
2,257,362	-		MIT1002_02015	0.45	-0.8
2,257,431	+		MIT1002_02015	0.53	-3.2
2,257,466	+		MIT1002_02015	0.57	-1.2
2,257,508	-		MIT1002_02015	0.62	-0.5
2,257,516	-		MIT1002_02015	0.63	-1.3
2,257,641	-		MIT1002_02015	0.77	+0.3
2,257,700	-		MIT1002_02015	0.84	-1.4