Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00789

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00788 and MIT1002_00789 are separated by 78 nucleotidesMIT1002_00789 and MIT1002_00790 are separated by 55 nucleotides MIT1002_00788: MIT1002_00788 - Single-stranded-DNA-specific exonuclease RecJ, at 873,331 to 875,052 _00788 MIT1002_00789: MIT1002_00789 - hypothetical protein, at 875,131 to 875,412 _00789 MIT1002_00790: MIT1002_00790 - Recombination protein O, at 875,468 to 876,181 _00790 Position (kb) 875 876Strain fitness (log2 ratio) -2 -1 0 1 2at 874.158 kb on - strand, within MIT1002_00788at 874.158 kb on - strand, within MIT1002_00788at 874.173 kb on - strand, within MIT1002_00788at 874.184 kb on + strand, within MIT1002_00788at 874.184 kb on + strand, within MIT1002_00788at 874.192 kb on - strand, within MIT1002_00788at 874.192 kb on - strand, within MIT1002_00788at 874.368 kb on + strand, within MIT1002_00788at 874.376 kb on - strand, within MIT1002_00788at 874.389 kb on - strand, within MIT1002_00788at 874.420 kb on - strand, within MIT1002_00788at 874.446 kb on - strand, within MIT1002_00788at 874.506 kb on + strand, within MIT1002_00788at 874.514 kb on - strand, within MIT1002_00788at 874.577 kb on + strand, within MIT1002_00788at 874.577 kb on + strand, within MIT1002_00788at 874.577 kb on + strand, within MIT1002_00788at 874.577 kb on + strand, within MIT1002_00788at 874.580 kb on - strand, within MIT1002_00788at 874.585 kb on - strand, within MIT1002_00788at 874.585 kb on - strand, within MIT1002_00788at 874.621 kb on + strand, within MIT1002_00788at 874.645 kb on - strand, within MIT1002_00788at 874.698 kb on + strand, within MIT1002_00788at 874.752 kb on + strand, within MIT1002_00788at 874.760 kb on - strand, within MIT1002_00788at 874.776 kb on - strand, within MIT1002_00788at 874.794 kb on - strand, within MIT1002_00788at 874.802 kb on + strand, within MIT1002_00788at 874.810 kb on - strand, within MIT1002_00788at 874.848 kb on + strand, within MIT1002_00788at 874.903 kb on - strandat 874.956 kb on + strandat 875.070 kb on - strandat 875.082 kb on + strandat 875.221 kb on + strand, within MIT1002_00789at 875.229 kb on - strand, within MIT1002_00789at 875.257 kb on - strand, within MIT1002_00789at 875.264 kb on + strand, within MIT1002_00789at 875.272 kb on - strand, within MIT1002_00789at 875.272 kb on - strand, within MIT1002_00789at 875.318 kb on - strand, within MIT1002_00789at 875.454 kb on - strandat 875.460 kb on + strandat 875.490 kb on + strandat 875.490 kb on + strandat 875.490 kb on + strandat 875.498 kb on - strandat 875.498 kb on - strandat 875.498 kb on - strandat 875.507 kb on + strandat 875.511 kb on + strandat 875.517 kb on - strandat 875.617 kb on + strand, within MIT1002_00790at 875.699 kb on - strand, within MIT1002_00790at 875.703 kb on + strand, within MIT1002_00790at 875.711 kb on - strand, within MIT1002_00790at 875.711 kb on - strand, within MIT1002_00790at 875.723 kb on + strand, within MIT1002_00790at 875.723 kb on + strand, within MIT1002_00790at 875.728 kb on + strand, within MIT1002_00790at 875.731 kb on - strand, within MIT1002_00790at 875.742 kb on + strand, within MIT1002_00790at 875.787 kb on + strand, within MIT1002_00790at 875.804 kb on + strand, within MIT1002_00790at 875.844 kb on + strand, within MIT1002_00790at 875.844 kb on + strand, within MIT1002_00790at 875.852 kb on - strand, within MIT1002_00790at 875.852 kb on - strand, within MIT1002_00790at 875.864 kb on - strand, within MIT1002_00790at 875.864 kb on - strand, within MIT1002_00790at 875.902 kb on + strand, within MIT1002_00790at 875.937 kb on - strand, within MIT1002_00790at 875.941 kb on + strand, within MIT1002_00790at 875.972 kb on + strand, within MIT1002_00790at 876.020 kb on + strand, within MIT1002_00790at 876.069 kb on - strand, within MIT1002_00790at 876.074 kb on - strand, within MIT1002_00790at 876.115 kb on + strandat 876.123 kb on - strandat 876.131 kb on + strandat 876.160 kb on + strandat 876.354 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
remove
874,158 - MIT1002_00788 0.48 -0.9
874,158 - MIT1002_00788 0.48 -0.5
874,173 - MIT1002_00788 0.49 -1.7
874,184 + MIT1002_00788 0.50 +0.2
874,184 + MIT1002_00788 0.50 +0.4
874,192 - MIT1002_00788 0.50 -1.7
874,192 - MIT1002_00788 0.50 -1.8
874,368 + MIT1002_00788 0.60 +0.8
874,376 - MIT1002_00788 0.61 -0.3
874,389 - MIT1002_00788 0.61 +0.6
874,420 - MIT1002_00788 0.63 +0.1
874,446 - MIT1002_00788 0.65 +0.6
874,506 + MIT1002_00788 0.68 -0.3
874,514 - MIT1002_00788 0.69 -0.3
874,577 + MIT1002_00788 0.72 -0.4
874,577 + MIT1002_00788 0.72 +0.9
874,577 + MIT1002_00788 0.72 -0.7
874,577 + MIT1002_00788 0.72 -1.4
874,580 - MIT1002_00788 0.73 +0.1
874,585 - MIT1002_00788 0.73 +1.0
874,585 - MIT1002_00788 0.73 -1.7
874,621 + MIT1002_00788 0.75 -0.2
874,645 - MIT1002_00788 0.76 -0.5
874,698 + MIT1002_00788 0.79 +1.1
874,752 + MIT1002_00788 0.83 -0.1
874,760 - MIT1002_00788 0.83 -0.6
874,776 - MIT1002_00788 0.84 -0.2
874,794 - MIT1002_00788 0.85 +0.6
874,802 + MIT1002_00788 0.85 +1.4
874,810 - MIT1002_00788 0.86 -2.0
874,848 + MIT1002_00788 0.88 +1.1
874,903 - +0.4
874,956 + +0.5
875,070 - +1.9
875,082 + +0.8
875,221 + MIT1002_00789 0.32 +0.1
875,229 - MIT1002_00789 0.35 +0.2
875,257 - MIT1002_00789 0.45 +0.3
875,264 + MIT1002_00789 0.47 +1.4
875,272 - MIT1002_00789 0.50 +1.0
875,272 - MIT1002_00789 0.50 +0.6
875,318 - MIT1002_00789 0.66 -0.4
875,454 - +0.8
875,460 + +0.4
875,490 + +0.8
875,490 + +1.5
875,490 + -1.7
875,498 - -1.0
875,498 - +0.2
875,498 - -0.0
875,507 + -0.0
875,511 + -0.7
875,517 - +0.5
875,617 + MIT1002_00790 0.21 +0.3
875,699 - MIT1002_00790 0.32 +0.5
875,703 + MIT1002_00790 0.33 -0.8
875,711 - MIT1002_00790 0.34 +1.5
875,711 - MIT1002_00790 0.34 -0.9
875,723 + MIT1002_00790 0.36 -0.4
875,723 + MIT1002_00790 0.36 +0.5
875,728 + MIT1002_00790 0.36 -0.0
875,731 - MIT1002_00790 0.37 +0.2
875,742 + MIT1002_00790 0.38 +0.4
875,787 + MIT1002_00790 0.45 +0.4
875,804 + MIT1002_00790 0.47 +1.1
875,844 + MIT1002_00790 0.53 -0.6
875,844 + MIT1002_00790 0.53 -0.3
875,852 - MIT1002_00790 0.54 -0.0
875,852 - MIT1002_00790 0.54 -0.2
875,864 - MIT1002_00790 0.55 -0.6
875,864 - MIT1002_00790 0.55 -0.6
875,902 + MIT1002_00790 0.61 +0.2
875,937 - MIT1002_00790 0.66 -0.0
875,941 + MIT1002_00790 0.66 -1.9
875,972 + MIT1002_00790 0.71 -1.0
876,020 + MIT1002_00790 0.77 +1.1
876,069 - MIT1002_00790 0.84 +0.2
876,074 - MIT1002_00790 0.85 +0.9
876,115 + -0.9
876,123 - -0.2
876,131 + +0.4
876,160 + +0.1
876,354 + +0.2

Or see this region's nucleotide sequence