Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00774 and MIT1002_00775 are separated by 72 nucleotides MIT1002_00775 and MIT1002_00776 are separated by 60 nucleotides MIT1002_00776 and MIT1002_00777 are separated by 64 nucleotides MIT1002_00777 and MIT1002_00778 are separated by 171 nucleotides
MIT1002_00774: MIT1002_00774 - Aconitate hydratase 2, at 855,450 to 858,062
_00774
MIT1002_00775: MIT1002_00775 - hypothetical protein, at 858,135 to 858,584
_00775
MIT1002_00776: MIT1002_00776 - Lysine-sensitive aspartokinase 3, at 858,645 to 859,994
_00776
MIT1002_00777: MIT1002_00777 - SOUL heme-binding protein, at 860,059 to 860,697
_00777
MIT1002_00778: MIT1002_00778 - hypothetical protein, at 860,869 to 862,893
_00778
Position (kb) 858
859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 857.659 kb on + strand, within MIT1002_00774 at 857.725 kb on + strand, within MIT1002_00774 at 857.762 kb on + strand, within MIT1002_00774 at 857.782 kb on + strand, within MIT1002_00774 at 857.800 kb on - strand, within MIT1002_00774 at 857.916 kb on + strand at 857.916 kb on + strand at 857.922 kb on - strand at 857.922 kb on - strand at 858.011 kb on + strand at 858.057 kb on + strand at 858.091 kb on + strand at 858.091 kb on + strand at 858.091 kb on + strand at 858.091 kb on + strand at 858.091 kb on + strand at 858.099 kb on - strand at 858.099 kb on - strand at 858.099 kb on - strand at 858.099 kb on - strand at 858.168 kb on + strand at 858.174 kb on + strand at 858.174 kb on + strand at 858.174 kb on + strand at 858.174 kb on + strand at 858.174 kb on + strand at 858.174 kb on + strand at 858.174 kb on + strand at 858.174 kb on + strand at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.182 kb on - strand, within MIT1002_00775 at 858.289 kb on + strand, within MIT1002_00775 at 858.289 kb on + strand, within MIT1002_00775 at 858.297 kb on - strand, within MIT1002_00775 at 858.297 kb on - strand, within MIT1002_00775 at 858.297 kb on - strand, within MIT1002_00775 at 858.297 kb on - strand, within MIT1002_00775 at 858.297 kb on - strand, within MIT1002_00775 at 858.310 kb on + strand, within MIT1002_00775 at 858.310 kb on + strand, within MIT1002_00775 at 858.318 kb on - strand, within MIT1002_00775 at 858.339 kb on - strand, within MIT1002_00775 at 858.374 kb on + strand, within MIT1002_00775 at 858.475 kb on + strand, within MIT1002_00775 at 858.475 kb on + strand, within MIT1002_00775 at 858.475 kb on + strand, within MIT1002_00775 at 858.483 kb on - strand, within MIT1002_00775 at 858.483 kb on - strand, within MIT1002_00775 at 858.524 kb on - strand, within MIT1002_00775 at 858.705 kb on + strand at 858.751 kb on + strand at 858.758 kb on + strand at 858.761 kb on - strand at 858.782 kb on - strand, within MIT1002_00776 at 858.816 kb on - strand, within MIT1002_00776 at 858.816 kb on - strand, within MIT1002_00776 at 858.992 kb on + strand, within MIT1002_00776 at 859.007 kb on + strand, within MIT1002_00776 at 859.017 kb on + strand, within MIT1002_00776 at 859.025 kb on + strand, within MIT1002_00776 at 859.030 kb on + strand, within MIT1002_00776 at 859.066 kb on + strand, within MIT1002_00776 at 859.199 kb on - strand, within MIT1002_00776 at 859.236 kb on - strand, within MIT1002_00776 at 859.323 kb on + strand, within MIT1002_00776 at 859.325 kb on + strand, within MIT1002_00776 at 859.328 kb on + strand, within MIT1002_00776 at 859.328 kb on + strand, within MIT1002_00776 at 859.328 kb on + strand, within MIT1002_00776 at 859.328 kb on + strand, within MIT1002_00776 at 859.336 kb on - strand, within MIT1002_00776 at 859.336 kb on - strand, within MIT1002_00776 at 859.371 kb on + strand, within MIT1002_00776 at 859.444 kb on + strand, within MIT1002_00776 at 859.510 kb on - strand, within MIT1002_00776 at 859.518 kb on + strand, within MIT1002_00776 at 859.526 kb on - strand, within MIT1002_00776 at 859.539 kb on + strand, within MIT1002_00776 at 859.539 kb on + strand, within MIT1002_00776 at 859.539 kb on + strand, within MIT1002_00776 at 859.539 kb on + strand, within MIT1002_00776 at 859.545 kb on - strand, within MIT1002_00776 at 859.547 kb on - strand, within MIT1002_00776 at 859.552 kb on + strand, within MIT1002_00776 at 859.671 kb on - strand, within MIT1002_00776 at 859.671 kb on - strand, within MIT1002_00776 at 859.716 kb on + strand, within MIT1002_00776 at 859.716 kb on + strand, within MIT1002_00776 at 859.724 kb on + strand, within MIT1002_00776 at 859.813 kb on + strand, within MIT1002_00776 at 860.004 kb on - strand at 860.012 kb on - strand at 860.012 kb on - strand at 860.039 kb on - strand at 860.099 kb on - strand at 860.125 kb on + strand, within MIT1002_00777 at 860.133 kb on - strand, within MIT1002_00777 at 860.133 kb on - strand, within MIT1002_00777 at 860.133 kb on - strand, within MIT1002_00777 at 860.133 kb on - strand, within MIT1002_00777 at 860.145 kb on - strand, within MIT1002_00777 at 860.153 kb on - strand, within MIT1002_00777 at 860.192 kb on + strand, within MIT1002_00777 at 860.376 kb on - strand, within MIT1002_00777 at 860.432 kb on - strand, within MIT1002_00777 at 860.461 kb on + strand, within MIT1002_00777 at 860.469 kb on - strand, within MIT1002_00777 at 860.531 kb on - strand, within MIT1002_00777 at 860.532 kb on - strand, within MIT1002_00777 at 860.583 kb on - strand, within MIT1002_00777 at 860.583 kb on - strand, within MIT1002_00777 at 860.630 kb on + strand, within MIT1002_00777 at 860.667 kb on + strand at 860.756 kb on + strand at 860.764 kb on - strand at 860.764 kb on - strand at 860.764 kb on - strand at 860.766 kb on + strand at 860.774 kb on - strand at 860.774 kb on - strand at 860.774 kb on - strand at 860.774 kb on - strand at 860.797 kb on - strand at 860.797 kb on - strand at 860.797 kb on - strand at 860.805 kb on + strand at 860.844 kb on + strand at 860.873 kb on + strand at 860.873 kb on + strand at 860.904 kb on - strand at 860.910 kb on - strand at 860.922 kb on + strand at 860.942 kb on - strand at 860.965 kb on - strand at 860.972 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2 remove 857,659 + MIT1002_00774 0.85 -0.4 857,725 + MIT1002_00774 0.87 -0.1 857,762 + MIT1002_00774 0.88 +0.3 857,782 + MIT1002_00774 0.89 +1.6 857,800 - MIT1002_00774 0.90 +0.4 857,916 + +1.6 857,916 + -0.3 857,922 - +0.1 857,922 - +0.1 858,011 + +1.3 858,057 + +0.4 858,091 + +2.1 858,091 + +0.9 858,091 + -2.2 858,091 + +0.4 858,091 + -0.9 858,099 - +0.5 858,099 - -2.4 858,099 - -0.1 858,099 - +0.0 858,168 + -2.2 858,174 + +1.3 858,174 + +0.8 858,174 + -1.5 858,174 + -0.4 858,174 + -0.3 858,174 + -0.4 858,174 + -1.2 858,174 + +0.3 858,182 - MIT1002_00775 0.10 -1.3 858,182 - MIT1002_00775 0.10 -1.7 858,182 - MIT1002_00775 0.10 -1.4 858,182 - MIT1002_00775 0.10 -0.3 858,182 - MIT1002_00775 0.10 -0.0 858,182 - MIT1002_00775 0.10 -0.4 858,182 - MIT1002_00775 0.10 -0.7 858,182 - MIT1002_00775 0.10 -2.3 858,182 - MIT1002_00775 0.10 +0.0 858,182 - MIT1002_00775 0.10 -1.4 858,289 + MIT1002_00775 0.34 -0.6 858,289 + MIT1002_00775 0.34 +0.0 858,297 - MIT1002_00775 0.36 -1.7 858,297 - MIT1002_00775 0.36 -0.2 858,297 - MIT1002_00775 0.36 -0.9 858,297 - MIT1002_00775 0.36 -2.0 858,297 - MIT1002_00775 0.36 -0.3 858,310 + MIT1002_00775 0.39 -0.2 858,310 + MIT1002_00775 0.39 -1.1 858,318 - MIT1002_00775 0.41 -0.1 858,339 - MIT1002_00775 0.45 -0.5 858,374 + MIT1002_00775 0.53 -0.4 858,475 + MIT1002_00775 0.76 +1.3 858,475 + MIT1002_00775 0.76 +0.5 858,475 + MIT1002_00775 0.76 +1.1 858,483 - MIT1002_00775 0.77 -1.2 858,483 - MIT1002_00775 0.77 +0.5 858,524 - MIT1002_00775 0.86 -0.2 858,705 + -1.4 858,751 + +0.7 858,758 + +0.6 858,761 - +0.3 858,782 - MIT1002_00776 0.10 -1.0 858,816 - MIT1002_00776 0.13 -0.6 858,816 - MIT1002_00776 0.13 -0.9 858,992 + MIT1002_00776 0.26 -1.0 859,007 + MIT1002_00776 0.27 -0.6 859,017 + MIT1002_00776 0.28 -1.8 859,025 + MIT1002_00776 0.28 -3.0 859,030 + MIT1002_00776 0.29 +0.2 859,066 + MIT1002_00776 0.31 +0.3 859,199 - MIT1002_00776 0.41 -2.3 859,236 - MIT1002_00776 0.44 -0.2 859,323 + MIT1002_00776 0.50 -1.5 859,325 + MIT1002_00776 0.50 -1.8 859,328 + MIT1002_00776 0.51 -0.8 859,328 + MIT1002_00776 0.51 -2.0 859,328 + MIT1002_00776 0.51 -0.4 859,328 + MIT1002_00776 0.51 -1.4 859,336 - MIT1002_00776 0.51 +0.1 859,336 - MIT1002_00776 0.51 -0.3 859,371 + MIT1002_00776 0.54 -0.7 859,444 + MIT1002_00776 0.59 -0.5 859,510 - MIT1002_00776 0.64 -0.7 859,518 + MIT1002_00776 0.65 -1.2 859,526 - MIT1002_00776 0.65 -2.0 859,539 + MIT1002_00776 0.66 -1.1 859,539 + MIT1002_00776 0.66 -0.6 859,539 + MIT1002_00776 0.66 -2.3 859,539 + MIT1002_00776 0.66 -0.2 859,545 - MIT1002_00776 0.67 -1.4 859,547 - MIT1002_00776 0.67 +1.2 859,552 + MIT1002_00776 0.67 -1.5 859,671 - MIT1002_00776 0.76 -0.2 859,671 - MIT1002_00776 0.76 +0.5 859,716 + MIT1002_00776 0.79 -1.5 859,716 + MIT1002_00776 0.79 -0.0 859,724 + MIT1002_00776 0.80 +0.4 859,813 + MIT1002_00776 0.87 +0.4 860,004 - +0.6 860,012 - +0.3 860,012 - +0.1 860,039 - +0.7 860,099 - -1.7 860,125 + MIT1002_00777 0.10 +0.7 860,133 - MIT1002_00777 0.12 -0.3 860,133 - MIT1002_00777 0.12 -1.3 860,133 - MIT1002_00777 0.12 +0.1 860,133 - MIT1002_00777 0.12 -0.0 860,145 - MIT1002_00777 0.13 -0.1 860,153 - MIT1002_00777 0.15 +1.2 860,192 + MIT1002_00777 0.21 +0.7 860,376 - MIT1002_00777 0.50 +0.6 860,432 - MIT1002_00777 0.58 +0.4 860,461 + MIT1002_00777 0.63 +0.5 860,469 - MIT1002_00777 0.64 +0.0 860,531 - MIT1002_00777 0.74 -0.1 860,532 - MIT1002_00777 0.74 +0.0 860,583 - MIT1002_00777 0.82 -0.6 860,583 - MIT1002_00777 0.82 +1.1 860,630 + MIT1002_00777 0.89 -0.8 860,667 + +1.4 860,756 + +1.3 860,764 - +1.1 860,764 - +0.5 860,764 - +0.3 860,766 + -0.4 860,774 - -0.4 860,774 - +1.0 860,774 - -1.6 860,774 - -0.1 860,797 - +1.6 860,797 - -0.2 860,797 - -0.3 860,805 + -2.9 860,844 + -1.0 860,873 + +0.2 860,873 + +0.3 860,904 - +0.1 860,910 - -0.5 860,922 + -0.4 860,942 - +0.4 860,965 - +1.3 860,972 + -0.7
Or see this region's nucleotide sequence