Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00543

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00542 and MIT1002_00543 are separated by 18 nucleotidesMIT1002_00543 and MIT1002_00544 are separated by 190 nucleotides MIT1002_00542: MIT1002_00542 - hypothetical protein, at 591,088 to 592,590 _00542 MIT1002_00543: MIT1002_00543 - N-acetylmuramic acid 6-phosphate etherase, at 592,609 to 593,622 _00543 MIT1002_00544: MIT1002_00544 - Alanine racemase, at 593,813 to 594,889 _00544 Position (kb) 592 593 594Strain fitness (log2 ratio) -2 -1 0 1 2at 591.624 kb on + strand, within MIT1002_00542at 591.636 kb on + strand, within MIT1002_00542at 591.662 kb on - strand, within MIT1002_00542at 591.697 kb on - strand, within MIT1002_00542at 591.697 kb on - strand, within MIT1002_00542at 591.704 kb on - strand, within MIT1002_00542at 591.720 kb on + strand, within MIT1002_00542at 591.779 kb on - strand, within MIT1002_00542at 591.781 kb on - strand, within MIT1002_00542at 591.789 kb on - strand, within MIT1002_00542at 591.842 kb on - strand, within MIT1002_00542at 591.864 kb on + strand, within MIT1002_00542at 591.872 kb on - strand, within MIT1002_00542at 591.882 kb on - strand, within MIT1002_00542at 591.967 kb on - strand, within MIT1002_00542at 591.981 kb on + strand, within MIT1002_00542at 591.989 kb on - strand, within MIT1002_00542at 592.006 kb on + strand, within MIT1002_00542at 592.038 kb on - strand, within MIT1002_00542at 592.057 kb on - strand, within MIT1002_00542at 592.128 kb on + strand, within MIT1002_00542at 592.143 kb on + strand, within MIT1002_00542at 592.151 kb on - strand, within MIT1002_00542at 592.151 kb on - strand, within MIT1002_00542at 592.151 kb on - strand, within MIT1002_00542at 592.161 kb on - strand, within MIT1002_00542at 592.196 kb on + strand, within MIT1002_00542at 592.228 kb on - strand, within MIT1002_00542at 592.253 kb on - strand, within MIT1002_00542at 592.253 kb on - strand, within MIT1002_00542at 592.253 kb on - strand, within MIT1002_00542at 592.269 kb on + strand, within MIT1002_00542at 592.342 kb on - strand, within MIT1002_00542at 592.365 kb on - strand, within MIT1002_00542at 592.380 kb on + strand, within MIT1002_00542at 592.395 kb on - strand, within MIT1002_00542at 592.413 kb on + strand, within MIT1002_00542at 592.430 kb on - strand, within MIT1002_00542at 592.506 kb on + strandat 592.592 kb on + strandat 592.600 kb on - strandat 592.642 kb on - strandat 592.861 kb on - strand, within MIT1002_00543at 592.913 kb on + strand, within MIT1002_00543at 592.955 kb on - strand, within MIT1002_00543at 592.966 kb on + strand, within MIT1002_00543at 593.068 kb on + strand, within MIT1002_00543at 593.084 kb on - strand, within MIT1002_00543at 593.084 kb on - strand, within MIT1002_00543at 593.084 kb on - strand, within MIT1002_00543at 593.084 kb on - strand, within MIT1002_00543at 593.084 kb on - strand, within MIT1002_00543at 593.084 kb on - strand, within MIT1002_00543at 593.108 kb on + strand, within MIT1002_00543at 593.118 kb on + strand, within MIT1002_00543at 593.126 kb on - strand, within MIT1002_00543at 593.126 kb on - strand, within MIT1002_00543at 593.139 kb on + strand, within MIT1002_00543at 593.157 kb on - strand, within MIT1002_00543at 593.175 kb on + strand, within MIT1002_00543at 593.227 kb on - strand, within MIT1002_00543at 593.252 kb on + strand, within MIT1002_00543at 593.538 kb on - strandat 593.550 kb on + strandat 593.592 kb on + strandat 593.661 kb on + strandat 593.668 kb on + strandat 593.669 kb on - strandat 593.676 kb on - strandat 593.731 kb on - strandat 593.736 kb on + strandat 593.736 kb on + strandat 594.613 kb on + strand, within MIT1002_00544

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
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591,624 + MIT1002_00542 0.36 +0.3
591,636 + MIT1002_00542 0.36 +0.2
591,662 - MIT1002_00542 0.38 -1.7
591,697 - MIT1002_00542 0.41 -0.0
591,697 - MIT1002_00542 0.41 +1.1
591,704 - MIT1002_00542 0.41 -0.9
591,720 + MIT1002_00542 0.42 -0.1
591,779 - MIT1002_00542 0.46 +0.2
591,781 - MIT1002_00542 0.46 -2.0
591,789 - MIT1002_00542 0.47 +0.8
591,842 - MIT1002_00542 0.50 +0.4
591,864 + MIT1002_00542 0.52 +0.1
591,872 - MIT1002_00542 0.52 +0.4
591,882 - MIT1002_00542 0.53 +0.0
591,967 - MIT1002_00542 0.58 +0.0
591,981 + MIT1002_00542 0.59 -0.2
591,989 - MIT1002_00542 0.60 +0.4
592,006 + MIT1002_00542 0.61 -1.5
592,038 - MIT1002_00542 0.63 -2.5
592,057 - MIT1002_00542 0.64 -1.0
592,128 + MIT1002_00542 0.69 +0.2
592,143 + MIT1002_00542 0.70 +1.5
592,151 - MIT1002_00542 0.71 +0.8
592,151 - MIT1002_00542 0.71 -0.8
592,151 - MIT1002_00542 0.71 +1.3
592,161 - MIT1002_00542 0.71 -2.5
592,196 + MIT1002_00542 0.74 -1.3
592,228 - MIT1002_00542 0.76 +0.1
592,253 - MIT1002_00542 0.78 -0.8
592,253 - MIT1002_00542 0.78 +1.6
592,253 - MIT1002_00542 0.78 +2.6
592,269 + MIT1002_00542 0.79 -0.3
592,342 - MIT1002_00542 0.83 -0.1
592,365 - MIT1002_00542 0.85 +0.2
592,380 + MIT1002_00542 0.86 -0.8
592,395 - MIT1002_00542 0.87 +0.2
592,413 + MIT1002_00542 0.88 -0.5
592,430 - MIT1002_00542 0.89 +1.2
592,506 + -0.8
592,592 + -0.1
592,600 - -1.3
592,642 - +0.9
592,861 - MIT1002_00543 0.25 -2.2
592,913 + MIT1002_00543 0.30 -1.2
592,955 - MIT1002_00543 0.34 -0.4
592,966 + MIT1002_00543 0.35 -0.6
593,068 + MIT1002_00543 0.45 -0.1
593,084 - MIT1002_00543 0.47 -0.5
593,084 - MIT1002_00543 0.47 -0.6
593,084 - MIT1002_00543 0.47 -0.6
593,084 - MIT1002_00543 0.47 -0.2
593,084 - MIT1002_00543 0.47 -0.3
593,084 - MIT1002_00543 0.47 +0.3
593,108 + MIT1002_00543 0.49 +0.1
593,118 + MIT1002_00543 0.50 -0.4
593,126 - MIT1002_00543 0.51 -0.4
593,126 - MIT1002_00543 0.51 -0.4
593,139 + MIT1002_00543 0.52 -1.8
593,157 - MIT1002_00543 0.54 +0.6
593,175 + MIT1002_00543 0.56 -1.1
593,227 - MIT1002_00543 0.61 +0.0
593,252 + MIT1002_00543 0.63 -1.9
593,538 - +0.8
593,550 + -0.5
593,592 + -0.4
593,661 + -0.5
593,668 + -0.8
593,669 - -0.3
593,676 - -1.1
593,731 - +1.3
593,736 + +0.7
593,736 + -0.2
594,613 + MIT1002_00544 0.74 -1.4

Or see this region's nucleotide sequence