Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00468

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00467 and MIT1002_00468 are separated by 53 nucleotidesMIT1002_00468 and MIT1002_00469 are separated by 37 nucleotidesMIT1002_00469 and MIT1002_00470 overlap by 4 nucleotides MIT1002_00467: MIT1002_00467 - Argininosuccinate lyase, at 510,499 to 511,881 _00467 MIT1002_00468: MIT1002_00468 - Argininosuccinate synthase, at 511,935 to 513,146 _00468 MIT1002_00469: MIT1002_00469 - Ornithine carbamoyltransferase, at 513,184 to 514,095 _00469 MIT1002_00470: MIT1002_00470 - Acetylglutamate kinase, at 514,092 to 514,937 _00470 Position (kb) 511 512 513 514Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 510.946 kb on + strand, within MIT1002_00467at 510.995 kb on + strand, within MIT1002_00467at 511.052 kb on + strand, within MIT1002_00467at 511.084 kb on + strand, within MIT1002_00467at 511.092 kb on - strand, within MIT1002_00467at 511.154 kb on - strand, within MIT1002_00467at 511.183 kb on + strand, within MIT1002_00467at 511.189 kb on + strand, within MIT1002_00467at 511.189 kb on + strand, within MIT1002_00467at 511.191 kb on - strand, within MIT1002_00467at 511.197 kb on - strand, within MIT1002_00467at 511.197 kb on - strand, within MIT1002_00467at 511.200 kb on + strand, within MIT1002_00467at 511.216 kb on - strand, within MIT1002_00467at 511.218 kb on - strand, within MIT1002_00467at 511.236 kb on + strand, within MIT1002_00467at 511.293 kb on + strand, within MIT1002_00467at 511.294 kb on + strand, within MIT1002_00467at 511.294 kb on + strand, within MIT1002_00467at 511.294 kb on + strand, within MIT1002_00467at 511.302 kb on - strand, within MIT1002_00467at 511.311 kb on - strand, within MIT1002_00467at 511.338 kb on + strand, within MIT1002_00467at 511.347 kb on - strand, within MIT1002_00467at 511.372 kb on - strand, within MIT1002_00467at 511.378 kb on + strand, within MIT1002_00467at 511.378 kb on - strand, within MIT1002_00467at 511.383 kb on - strand, within MIT1002_00467at 511.398 kb on + strand, within MIT1002_00467at 511.408 kb on + strand, within MIT1002_00467at 511.408 kb on + strand, within MIT1002_00467at 511.416 kb on - strand, within MIT1002_00467at 511.424 kb on + strand, within MIT1002_00467at 511.425 kb on - strand, within MIT1002_00467at 511.498 kb on + strand, within MIT1002_00467at 511.512 kb on - strand, within MIT1002_00467at 511.566 kb on - strand, within MIT1002_00467at 511.583 kb on - strand, within MIT1002_00467at 511.693 kb on + strand, within MIT1002_00467at 511.698 kb on + strand, within MIT1002_00467at 511.698 kb on + strand, within MIT1002_00467at 511.737 kb on - strand, within MIT1002_00467at 511.782 kb on - strandat 511.828 kb on - strandat 511.870 kb on + strandat 511.878 kb on - strandat 511.880 kb on + strandat 511.890 kb on - strandat 511.901 kb on + strandat 511.906 kb on + strandat 511.906 kb on + strandat 511.909 kb on - strandat 511.909 kb on - strandat 511.914 kb on - strandat 511.921 kb on + strandat 511.921 kb on + strandat 511.940 kb on - strandat 511.986 kb on - strandat 512.000 kb on - strandat 512.084 kb on + strand, within MIT1002_00468at 512.104 kb on + strand, within MIT1002_00468at 512.128 kb on - strand, within MIT1002_00468at 512.160 kb on + strand, within MIT1002_00468at 512.207 kb on - strand, within MIT1002_00468at 512.207 kb on - strand, within MIT1002_00468at 512.289 kb on - strand, within MIT1002_00468at 512.355 kb on + strand, within MIT1002_00468at 512.375 kb on + strand, within MIT1002_00468at 512.375 kb on + strand, within MIT1002_00468at 512.383 kb on - strand, within MIT1002_00468at 512.383 kb on - strand, within MIT1002_00468at 512.383 kb on - strand, within MIT1002_00468at 512.383 kb on - strand, within MIT1002_00468at 512.383 kb on - strand, within MIT1002_00468at 512.489 kb on + strand, within MIT1002_00468at 512.490 kb on - strand, within MIT1002_00468at 512.494 kb on + strand, within MIT1002_00468at 512.497 kb on - strand, within MIT1002_00468at 512.499 kb on + strand, within MIT1002_00468at 512.502 kb on - strand, within MIT1002_00468at 512.529 kb on + strand, within MIT1002_00468at 512.532 kb on - strand, within MIT1002_00468at 512.537 kb on - strand, within MIT1002_00468at 512.599 kb on - strand, within MIT1002_00468at 512.710 kb on + strand, within MIT1002_00468at 512.726 kb on + strand, within MIT1002_00468at 512.726 kb on + strand, within MIT1002_00468at 512.777 kb on - strand, within MIT1002_00468at 512.835 kb on - strand, within MIT1002_00468at 512.866 kb on + strand, within MIT1002_00468at 512.879 kb on + strand, within MIT1002_00468at 512.888 kb on - strand, within MIT1002_00468at 512.888 kb on - strand, within MIT1002_00468at 512.912 kb on - strand, within MIT1002_00468at 512.922 kb on + strand, within MIT1002_00468at 512.930 kb on - strand, within MIT1002_00468at 513.016 kb on + strand, within MIT1002_00468at 513.029 kb on - strandat 513.107 kb on + strandat 513.112 kb on + strandat 513.112 kb on + strandat 513.120 kb on - strandat 513.232 kb on + strandat 513.308 kb on + strand, within MIT1002_00469at 513.326 kb on - strand, within MIT1002_00469at 513.356 kb on + strand, within MIT1002_00469at 513.356 kb on + strand, within MIT1002_00469at 513.393 kb on + strand, within MIT1002_00469at 513.401 kb on - strand, within MIT1002_00469at 513.439 kb on + strand, within MIT1002_00469at 513.439 kb on + strand, within MIT1002_00469at 513.447 kb on - strand, within MIT1002_00469at 513.447 kb on - strand, within MIT1002_00469at 513.461 kb on + strand, within MIT1002_00469at 513.461 kb on + strand, within MIT1002_00469at 513.461 kb on + strand, within MIT1002_00469at 513.469 kb on - strand, within MIT1002_00469at 513.469 kb on - strand, within MIT1002_00469at 513.552 kb on + strand, within MIT1002_00469at 513.552 kb on + strand, within MIT1002_00469at 513.552 kb on + strand, within MIT1002_00469at 513.552 kb on + strand, within MIT1002_00469at 513.560 kb on - strand, within MIT1002_00469at 513.580 kb on + strand, within MIT1002_00469at 513.620 kb on - strand, within MIT1002_00469at 513.635 kb on + strand, within MIT1002_00469at 513.646 kb on + strand, within MIT1002_00469at 513.653 kb on - strand, within MIT1002_00469at 513.654 kb on - strand, within MIT1002_00469at 513.700 kb on + strand, within MIT1002_00469at 513.806 kb on + strand, within MIT1002_00469at 513.833 kb on - strand, within MIT1002_00469at 513.881 kb on + strand, within MIT1002_00469at 513.887 kb on - strand, within MIT1002_00469at 513.887 kb on - strand, within MIT1002_00469at 513.887 kb on - strand, within MIT1002_00469at 513.928 kb on + strand, within MIT1002_00469at 513.963 kb on + strand, within MIT1002_00469at 514.068 kb on + strandat 514.075 kb on + strandat 514.075 kb on + strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.083 kb on - strandat 514.089 kb on + strandat 514.134 kb on + strandat 514.134 kb on + strandat 514.142 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
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510,946 + MIT1002_00467 0.32 -7.0
510,995 + MIT1002_00467 0.36 -4.2
511,052 + MIT1002_00467 0.40 -5.4
511,084 + MIT1002_00467 0.42 -4.0
511,092 - MIT1002_00467 0.43 -1.4
511,154 - MIT1002_00467 0.47 -3.3
511,183 + MIT1002_00467 0.49 -3.4
511,189 + MIT1002_00467 0.50 -4.7
511,189 + MIT1002_00467 0.50 -3.1
511,191 - MIT1002_00467 0.50 -4.9
511,197 - MIT1002_00467 0.50 -0.6
511,197 - MIT1002_00467 0.50 -3.2
511,200 + MIT1002_00467 0.51 -4.6
511,216 - MIT1002_00467 0.52 -2.3
511,218 - MIT1002_00467 0.52 -4.8
511,236 + MIT1002_00467 0.53 -3.0
511,293 + MIT1002_00467 0.57 -3.4
511,294 + MIT1002_00467 0.57 -5.2
511,294 + MIT1002_00467 0.57 -3.0
511,294 + MIT1002_00467 0.57 -2.7
511,302 - MIT1002_00467 0.58 -6.3
511,311 - MIT1002_00467 0.59 -2.0
511,338 + MIT1002_00467 0.61 -3.9
511,347 - MIT1002_00467 0.61 -5.1
511,372 - MIT1002_00467 0.63 -4.9
511,378 + MIT1002_00467 0.64 -4.7
511,378 - MIT1002_00467 0.64 -3.1
511,383 - MIT1002_00467 0.64 -1.4
511,398 + MIT1002_00467 0.65 -4.9
511,408 + MIT1002_00467 0.66 -3.7
511,408 + MIT1002_00467 0.66 -3.0
511,416 - MIT1002_00467 0.66 -3.4
511,424 + MIT1002_00467 0.67 -4.7
511,425 - MIT1002_00467 0.67 -5.8
511,498 + MIT1002_00467 0.72 -5.5
511,512 - MIT1002_00467 0.73 -4.7
511,566 - MIT1002_00467 0.77 -6.7
511,583 - MIT1002_00467 0.78 -4.7
511,693 + MIT1002_00467 0.86 -5.5
511,698 + MIT1002_00467 0.87 -4.3
511,698 + MIT1002_00467 0.87 -4.2
511,737 - MIT1002_00467 0.90 -7.7
511,782 - -3.1
511,828 - -6.4
511,870 + -4.5
511,878 - -4.4
511,880 + -3.0
511,890 - -0.7
511,901 + -4.3
511,906 + -2.6
511,906 + -2.6
511,909 - -0.6
511,909 - +0.8
511,914 - -0.4
511,921 + -3.3
511,921 + -5.4
511,940 - -0.4
511,986 - -4.7
512,000 - -3.8
512,084 + MIT1002_00468 0.12 -4.5
512,104 + MIT1002_00468 0.14 -4.5
512,128 - MIT1002_00468 0.16 -4.2
512,160 + MIT1002_00468 0.19 -3.3
512,207 - MIT1002_00468 0.22 -4.3
512,207 - MIT1002_00468 0.22 -6.2
512,289 - MIT1002_00468 0.29 -2.5
512,355 + MIT1002_00468 0.35 -2.5
512,375 + MIT1002_00468 0.36 -3.3
512,375 + MIT1002_00468 0.36 -2.9
512,383 - MIT1002_00468 0.37 -4.9
512,383 - MIT1002_00468 0.37 -1.8
512,383 - MIT1002_00468 0.37 -4.0
512,383 - MIT1002_00468 0.37 -3.8
512,383 - MIT1002_00468 0.37 -6.0
512,489 + MIT1002_00468 0.46 -4.3
512,490 - MIT1002_00468 0.46 -4.0
512,494 + MIT1002_00468 0.46 -1.4
512,497 - MIT1002_00468 0.46 -3.0
512,499 + MIT1002_00468 0.47 -4.2
512,502 - MIT1002_00468 0.47 -6.0
512,529 + MIT1002_00468 0.49 -3.8
512,532 - MIT1002_00468 0.49 -5.1
512,537 - MIT1002_00468 0.50 -2.6
512,599 - MIT1002_00468 0.55 -5.8
512,710 + MIT1002_00468 0.64 -3.9
512,726 + MIT1002_00468 0.65 -2.8
512,726 + MIT1002_00468 0.65 -4.0
512,777 - MIT1002_00468 0.69 -2.3
512,835 - MIT1002_00468 0.74 -4.9
512,866 + MIT1002_00468 0.77 -5.0
512,879 + MIT1002_00468 0.78 -3.9
512,888 - MIT1002_00468 0.79 -8.5
512,888 - MIT1002_00468 0.79 -4.7
512,912 - MIT1002_00468 0.81 -2.6
512,922 + MIT1002_00468 0.81 -3.7
512,930 - MIT1002_00468 0.82 -4.9
513,016 + MIT1002_00468 0.89 -3.2
513,029 - -2.8
513,107 + -5.8
513,112 + -2.9
513,112 + -4.0
513,120 - -5.5
513,232 + -5.8
513,308 + MIT1002_00469 0.14 -5.9
513,326 - MIT1002_00469 0.16 -4.7
513,356 + MIT1002_00469 0.19 -4.1
513,356 + MIT1002_00469 0.19 -6.1
513,393 + MIT1002_00469 0.23 -3.1
513,401 - MIT1002_00469 0.24 -3.9
513,439 + MIT1002_00469 0.28 -1.6
513,439 + MIT1002_00469 0.28 -4.6
513,447 - MIT1002_00469 0.29 -3.7
513,447 - MIT1002_00469 0.29 -6.6
513,461 + MIT1002_00469 0.30 -5.0
513,461 + MIT1002_00469 0.30 -5.6
513,461 + MIT1002_00469 0.30 -2.6
513,469 - MIT1002_00469 0.31 -3.8
513,469 - MIT1002_00469 0.31 -5.8
513,552 + MIT1002_00469 0.40 -4.5
513,552 + MIT1002_00469 0.40 -5.1
513,552 + MIT1002_00469 0.40 -4.8
513,552 + MIT1002_00469 0.40 -6.0
513,560 - MIT1002_00469 0.41 -4.2
513,580 + MIT1002_00469 0.43 -3.7
513,620 - MIT1002_00469 0.48 -4.7
513,635 + MIT1002_00469 0.49 -4.5
513,646 + MIT1002_00469 0.51 -4.6
513,653 - MIT1002_00469 0.51 -3.4
513,654 - MIT1002_00469 0.52 -2.7
513,700 + MIT1002_00469 0.57 -7.1
513,806 + MIT1002_00469 0.68 -4.5
513,833 - MIT1002_00469 0.71 -3.6
513,881 + MIT1002_00469 0.76 -5.0
513,887 - MIT1002_00469 0.77 -4.5
513,887 - MIT1002_00469 0.77 -4.6
513,887 - MIT1002_00469 0.77 -4.8
513,928 + MIT1002_00469 0.82 -2.7
513,963 + MIT1002_00469 0.85 -4.8
514,068 + -4.0
514,075 + -4.0
514,075 + -1.1
514,083 - -4.9
514,083 - -1.8
514,083 - -4.2
514,083 - -3.8
514,083 - -1.8
514,083 - -5.8
514,083 - -6.5
514,089 + -7.8
514,134 + -5.2
514,134 + -6.6
514,142 - +1.2

Or see this region's nucleotide sequence