Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00356

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00355 and MIT1002_00356 are separated by 296 nucleotidesMIT1002_00356 and MIT1002_00357 are separated by 92 nucleotidesMIT1002_00357 and MIT1002_00358 are separated by 1 nucleotides MIT1002_00355: MIT1002_00355 - putative permease, DMT superfamily, at 382,829 to 383,722 _00355 MIT1002_00356: MIT1002_00356 - phosphoglycolate phosphatase, at 384,019 to 384,522 _00356 MIT1002_00357: MIT1002_00357 - hypothetical protein, at 384,615 to 385,502 _00357 MIT1002_00358: MIT1002_00358 - hypothetical protein, at 385,504 to 387,405 _00358 Position (kb) 384 385Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 383.123 kb on + strand, within MIT1002_00355at 383.296 kb on + strand, within MIT1002_00355at 383.301 kb on - strand, within MIT1002_00355at 383.317 kb on + strand, within MIT1002_00355at 383.325 kb on + strand, within MIT1002_00355at 383.325 kb on + strand, within MIT1002_00355at 383.339 kb on + strand, within MIT1002_00355at 383.347 kb on - strand, within MIT1002_00355at 383.350 kb on + strand, within MIT1002_00355at 383.355 kb on - strand, within MIT1002_00355at 383.389 kb on - strand, within MIT1002_00355at 383.417 kb on + strand, within MIT1002_00355at 383.423 kb on - strand, within MIT1002_00355at 383.446 kb on + strand, within MIT1002_00355at 383.461 kb on + strand, within MIT1002_00355at 383.577 kb on + strand, within MIT1002_00355at 383.585 kb on - strand, within MIT1002_00355at 383.671 kb on - strandat 383.671 kb on - strandat 383.692 kb on + strandat 383.699 kb on + strandat 383.699 kb on + strandat 383.702 kb on - strandat 383.705 kb on - strandat 383.707 kb on - strandat 383.707 kb on - strandat 383.802 kb on + strandat 383.803 kb on - strandat 383.810 kb on - strandat 383.810 kb on - strandat 383.812 kb on + strandat 383.866 kb on - strandat 383.880 kb on + strandat 383.880 kb on + strandat 383.928 kb on + strandat 383.933 kb on + strandat 383.933 kb on + strandat 384.008 kb on + strandat 384.099 kb on - strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.106 kb on + strand, within MIT1002_00356at 384.111 kb on + strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.114 kb on - strand, within MIT1002_00356at 384.133 kb on + strand, within MIT1002_00356at 384.141 kb on - strand, within MIT1002_00356at 384.151 kb on + strand, within MIT1002_00356at 384.151 kb on + strand, within MIT1002_00356at 384.151 kb on + strand, within MIT1002_00356at 384.151 kb on + strand, within MIT1002_00356at 384.151 kb on + strand, within MIT1002_00356at 384.151 kb on + strand, within MIT1002_00356at 384.151 kb on + strand, within MIT1002_00356at 384.159 kb on - strand, within MIT1002_00356at 384.159 kb on - strand, within MIT1002_00356at 384.159 kb on - strand, within MIT1002_00356at 384.159 kb on - strand, within MIT1002_00356at 384.159 kb on - strand, within MIT1002_00356at 384.159 kb on - strand, within MIT1002_00356at 384.159 kb on - strand, within MIT1002_00356at 384.159 kb on - strand, within MIT1002_00356at 384.231 kb on + strand, within MIT1002_00356at 384.276 kb on + strand, within MIT1002_00356at 384.277 kb on + strand, within MIT1002_00356at 384.323 kb on + strand, within MIT1002_00356at 384.323 kb on + strand, within MIT1002_00356at 384.323 kb on + strand, within MIT1002_00356at 384.334 kb on + strand, within MIT1002_00356at 384.342 kb on + strand, within MIT1002_00356at 384.384 kb on + strand, within MIT1002_00356at 384.392 kb on - strand, within MIT1002_00356at 384.401 kb on + strand, within MIT1002_00356at 384.430 kb on - strand, within MIT1002_00356at 384.457 kb on - strand, within MIT1002_00356at 384.526 kb on + strandat 384.579 kb on - strandat 384.650 kb on - strandat 384.661 kb on - strandat 384.661 kb on - strandat 384.682 kb on + strandat 384.695 kb on - strandat 384.788 kb on + strand, within MIT1002_00357at 384.856 kb on - strand, within MIT1002_00357at 384.858 kb on + strand, within MIT1002_00357at 384.870 kb on - strand, within MIT1002_00357at 384.908 kb on + strand, within MIT1002_00357at 384.913 kb on + strand, within MIT1002_00357at 384.913 kb on + strand, within MIT1002_00357at 384.914 kb on + strand, within MIT1002_00357at 384.914 kb on + strand, within MIT1002_00357at 384.914 kb on + strand, within MIT1002_00357at 384.914 kb on + strand, within MIT1002_00357at 384.921 kb on - strand, within MIT1002_00357at 384.921 kb on - strand, within MIT1002_00357at 384.921 kb on - strand, within MIT1002_00357at 384.921 kb on - strand, within MIT1002_00357at 384.922 kb on - strand, within MIT1002_00357at 384.922 kb on - strand, within MIT1002_00357at 384.922 kb on - strand, within MIT1002_00357at 384.922 kb on - strand, within MIT1002_00357at 384.922 kb on - strand, within MIT1002_00357at 384.929 kb on + strand, within MIT1002_00357at 384.996 kb on + strand, within MIT1002_00357at 385.030 kb on + strand, within MIT1002_00357at 385.038 kb on - strand, within MIT1002_00357at 385.102 kb on - strand, within MIT1002_00357at 385.105 kb on - strand, within MIT1002_00357at 385.138 kb on - strand, within MIT1002_00357at 385.153 kb on + strand, within MIT1002_00357at 385.161 kb on - strand, within MIT1002_00357at 385.219 kb on + strand, within MIT1002_00357at 385.261 kb on - strand, within MIT1002_00357at 385.333 kb on + strand, within MIT1002_00357at 385.333 kb on + strand, within MIT1002_00357at 385.333 kb on + strand, within MIT1002_00357at 385.333 kb on - strand, within MIT1002_00357at 385.334 kb on - strand, within MIT1002_00357at 385.341 kb on - strand, within MIT1002_00357at 385.341 kb on - strand, within MIT1002_00357at 385.341 kb on - strand, within MIT1002_00357at 385.341 kb on - strand, within MIT1002_00357at 385.341 kb on - strand, within MIT1002_00357at 385.341 kb on - strand, within MIT1002_00357at 385.358 kb on - strand, within MIT1002_00357at 385.422 kb on - strandat 385.422 kb on - strandat 385.435 kb on + strandat 385.472 kb on + strandat 385.522 kb on - strandat 385.522 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
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383,123 + MIT1002_00355 0.33 +0.0
383,296 + MIT1002_00355 0.52 +0.1
383,301 - MIT1002_00355 0.53 -0.1
383,317 + MIT1002_00355 0.55 -0.1
383,325 + MIT1002_00355 0.55 +1.3
383,325 + MIT1002_00355 0.55 +0.1
383,339 + MIT1002_00355 0.57 -0.2
383,347 - MIT1002_00355 0.58 +0.1
383,350 + MIT1002_00355 0.58 -2.0
383,355 - MIT1002_00355 0.59 -1.0
383,389 - MIT1002_00355 0.63 +0.6
383,417 + MIT1002_00355 0.66 -3.7
383,423 - MIT1002_00355 0.66 +0.2
383,446 + MIT1002_00355 0.69 -3.8
383,461 + MIT1002_00355 0.71 -0.2
383,577 + MIT1002_00355 0.84 -0.2
383,585 - MIT1002_00355 0.85 +0.1
383,671 - +0.2
383,671 - -1.7
383,692 + +0.1
383,699 + +0.7
383,699 + +0.2
383,702 - -1.4
383,705 - -0.7
383,707 - -1.3
383,707 - -0.2
383,802 + +1.0
383,803 - -0.7
383,810 - +0.9
383,810 - +0.8
383,812 + +0.6
383,866 - -0.1
383,880 + -0.5
383,880 + -0.1
383,928 + +0.7
383,933 + +0.3
383,933 + -2.4
384,008 + +1.4
384,099 - MIT1002_00356 0.16 -0.9
384,106 + MIT1002_00356 0.17 +0.7
384,106 + MIT1002_00356 0.17 -0.1
384,106 + MIT1002_00356 0.17 +0.2
384,106 + MIT1002_00356 0.17 -1.0
384,106 + MIT1002_00356 0.17 -0.7
384,106 + MIT1002_00356 0.17 -0.2
384,106 + MIT1002_00356 0.17 -0.0
384,106 + MIT1002_00356 0.17 -1.3
384,106 + MIT1002_00356 0.17 -2.4
384,106 + MIT1002_00356 0.17 -1.8
384,111 + MIT1002_00356 0.18 +0.1
384,114 - MIT1002_00356 0.19 -2.4
384,114 - MIT1002_00356 0.19 -2.4
384,114 - MIT1002_00356 0.19 -0.5
384,114 - MIT1002_00356 0.19 -0.4
384,114 - MIT1002_00356 0.19 -2.0
384,114 - MIT1002_00356 0.19 -0.0
384,114 - MIT1002_00356 0.19 +0.6
384,114 - MIT1002_00356 0.19 -0.9
384,114 - MIT1002_00356 0.19 +2.7
384,114 - MIT1002_00356 0.19 -3.6
384,133 + MIT1002_00356 0.23 -0.5
384,141 - MIT1002_00356 0.24 +0.1
384,151 + MIT1002_00356 0.26 +0.0
384,151 + MIT1002_00356 0.26 +0.3
384,151 + MIT1002_00356 0.26 +1.2
384,151 + MIT1002_00356 0.26 +0.3
384,151 + MIT1002_00356 0.26 -1.1
384,151 + MIT1002_00356 0.26 -1.0
384,151 + MIT1002_00356 0.26 -0.2
384,159 - MIT1002_00356 0.28 +0.1
384,159 - MIT1002_00356 0.28 -0.0
384,159 - MIT1002_00356 0.28 +0.1
384,159 - MIT1002_00356 0.28 -0.1
384,159 - MIT1002_00356 0.28 -1.5
384,159 - MIT1002_00356 0.28 -1.5
384,159 - MIT1002_00356 0.28 +0.2
384,159 - MIT1002_00356 0.28 +0.4
384,231 + MIT1002_00356 0.42 -0.7
384,276 + MIT1002_00356 0.51 -0.3
384,277 + MIT1002_00356 0.51 +0.3
384,323 + MIT1002_00356 0.60 -0.7
384,323 + MIT1002_00356 0.60 +0.6
384,323 + MIT1002_00356 0.60 -0.4
384,334 + MIT1002_00356 0.62 -2.6
384,342 + MIT1002_00356 0.64 +0.9
384,384 + MIT1002_00356 0.72 -1.3
384,392 - MIT1002_00356 0.74 +0.4
384,401 + MIT1002_00356 0.76 -0.1
384,430 - MIT1002_00356 0.82 -0.3
384,457 - MIT1002_00356 0.87 +1.5
384,526 + -0.6
384,579 - -0.6
384,650 - +0.2
384,661 - -0.0
384,661 - +0.5
384,682 + +0.1
384,695 - -1.3
384,788 + MIT1002_00357 0.19 -0.5
384,856 - MIT1002_00357 0.27 -0.3
384,858 + MIT1002_00357 0.27 +0.3
384,870 - MIT1002_00357 0.29 +0.8
384,908 + MIT1002_00357 0.33 -1.4
384,913 + MIT1002_00357 0.34 -0.5
384,913 + MIT1002_00357 0.34 +1.4
384,914 + MIT1002_00357 0.34 +0.3
384,914 + MIT1002_00357 0.34 -0.6
384,914 + MIT1002_00357 0.34 -0.1
384,914 + MIT1002_00357 0.34 -0.2
384,921 - MIT1002_00357 0.34 -1.4
384,921 - MIT1002_00357 0.34 +0.3
384,921 - MIT1002_00357 0.34 -0.6
384,921 - MIT1002_00357 0.34 +0.5
384,922 - MIT1002_00357 0.35 +0.5
384,922 - MIT1002_00357 0.35 -0.1
384,922 - MIT1002_00357 0.35 +0.2
384,922 - MIT1002_00357 0.35 -0.1
384,922 - MIT1002_00357 0.35 -0.8
384,929 + MIT1002_00357 0.35 -0.6
384,996 + MIT1002_00357 0.43 -0.1
385,030 + MIT1002_00357 0.47 +0.2
385,038 - MIT1002_00357 0.48 +0.3
385,102 - MIT1002_00357 0.55 +0.5
385,105 - MIT1002_00357 0.55 +0.5
385,138 - MIT1002_00357 0.59 +0.0
385,153 + MIT1002_00357 0.61 +1.3
385,161 - MIT1002_00357 0.61 +1.0
385,219 + MIT1002_00357 0.68 -0.5
385,261 - MIT1002_00357 0.73 +0.4
385,333 + MIT1002_00357 0.81 -0.4
385,333 + MIT1002_00357 0.81 +0.1
385,333 + MIT1002_00357 0.81 +0.1
385,333 - MIT1002_00357 0.81 +0.1
385,334 - MIT1002_00357 0.81 -0.4
385,341 - MIT1002_00357 0.82 -0.5
385,341 - MIT1002_00357 0.82 +0.1
385,341 - MIT1002_00357 0.82 -0.5
385,341 - MIT1002_00357 0.82 +0.7
385,341 - MIT1002_00357 0.82 -0.2
385,341 - MIT1002_00357 0.82 +0.2
385,358 - MIT1002_00357 0.84 -1.8
385,422 - +0.4
385,422 - -0.4
385,435 + +0.7
385,472 + +0.5
385,522 - -0.6
385,522 - +0.1

Or see this region's nucleotide sequence