Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00249

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00247 and MIT1002_00248 are separated by 194 nucleotidesMIT1002_00248 and MIT1002_00249 are separated by 418 nucleotidesMIT1002_00249 and MIT1002_00250 overlap by 1 nucleotides MIT1002_00247: MIT1002_00247 - Transcriptional regulatory protein CusR, at 275,237 to 275,920 _00247 MIT1002_00248: MIT1002_00248 - hypothetical protein, at 276,115 to 276,249 _00248 MIT1002_00249: MIT1002_00249 - Protein of unknown function, DUF, at 276,668 to 277,177 _00249 MIT1002_00250: MIT1002_00250 - type I secretion outer membrane protein, TolC family, at 277,177 to 278,541 _00250 Position (kb) 276 277 278Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 275.754 kb on - strand, within MIT1002_00247at 275.769 kb on - strand, within MIT1002_00247at 275.769 kb on - strand, within MIT1002_00247at 275.816 kb on + strand, within MIT1002_00247at 275.829 kb on - strand, within MIT1002_00247at 275.865 kb on - strandat 275.927 kb on + strandat 275.959 kb on + strandat 275.959 kb on + strandat 275.959 kb on + strandat 275.967 kb on - strandat 275.969 kb on + strandat 275.969 kb on + strandat 275.969 kb on + strandat 275.969 kb on + strandat 275.977 kb on - strandat 276.048 kb on + strandat 276.048 kb on + strandat 276.056 kb on - strandat 276.056 kb on - strandat 276.056 kb on - strandat 276.319 kb on + strandat 276.379 kb on + strandat 276.486 kb on - strandat 276.494 kb on - strandat 276.496 kb on + strandat 276.496 kb on + strandat 276.501 kb on + strandat 276.501 kb on + strandat 276.501 kb on + strandat 276.504 kb on - strandat 276.509 kb on - strandat 276.509 kb on - strandat 276.509 kb on - strandat 276.509 kb on - strandat 276.509 kb on - strandat 276.509 kb on - strandat 276.554 kb on - strandat 276.554 kb on - strandat 276.564 kb on - strandat 276.590 kb on - strandat 276.598 kb on + strandat 276.604 kb on + strandat 276.612 kb on - strandat 276.635 kb on - strandat 276.697 kb on + strandat 276.737 kb on - strand, within MIT1002_00249at 276.760 kb on - strand, within MIT1002_00249at 276.770 kb on - strand, within MIT1002_00249at 276.794 kb on - strand, within MIT1002_00249at 276.819 kb on - strand, within MIT1002_00249at 276.819 kb on - strand, within MIT1002_00249at 276.831 kb on + strand, within MIT1002_00249at 276.925 kb on + strand, within MIT1002_00249at 276.974 kb on + strand, within MIT1002_00249at 277.036 kb on - strand, within MIT1002_00249at 277.098 kb on - strand, within MIT1002_00249at 277.133 kb on + strandat 277.141 kb on - strandat 277.156 kb on + strandat 277.158 kb on + strandat 277.158 kb on - strandat 277.313 kb on + strandat 277.316 kb on - strand, within MIT1002_00250at 277.339 kb on - strand, within MIT1002_00250at 277.344 kb on - strand, within MIT1002_00250at 277.349 kb on - strand, within MIT1002_00250at 277.349 kb on - strand, within MIT1002_00250at 277.349 kb on - strand, within MIT1002_00250at 277.434 kb on + strand, within MIT1002_00250at 277.434 kb on + strand, within MIT1002_00250at 277.454 kb on - strand, within MIT1002_00250at 277.523 kb on + strand, within MIT1002_00250at 277.531 kb on - strand, within MIT1002_00250at 277.534 kb on + strand, within MIT1002_00250at 277.534 kb on + strand, within MIT1002_00250at 277.536 kb on - strand, within MIT1002_00250at 277.539 kb on + strand, within MIT1002_00250at 277.539 kb on + strand, within MIT1002_00250at 277.539 kb on + strand, within MIT1002_00250at 277.539 kb on + strand, within MIT1002_00250at 277.539 kb on + strand, within MIT1002_00250at 277.547 kb on - strand, within MIT1002_00250at 277.547 kb on - strand, within MIT1002_00250at 277.616 kb on + strand, within MIT1002_00250at 277.616 kb on + strand, within MIT1002_00250at 277.616 kb on + strand, within MIT1002_00250at 277.616 kb on + strand, within MIT1002_00250at 277.624 kb on - strand, within MIT1002_00250at 277.664 kb on - strand, within MIT1002_00250at 277.690 kb on + strand, within MIT1002_00250at 277.919 kb on - strand, within MIT1002_00250at 278.029 kb on - strand, within MIT1002_00250at 278.069 kb on - strand, within MIT1002_00250at 278.076 kb on + strand, within MIT1002_00250at 278.088 kb on + strand, within MIT1002_00250

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
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275,754 - MIT1002_00247 0.76 +0.6
275,769 - MIT1002_00247 0.78 +0.5
275,769 - MIT1002_00247 0.78 +0.3
275,816 + MIT1002_00247 0.85 +0.4
275,829 - MIT1002_00247 0.87 +0.8
275,865 - -0.3
275,927 + +1.8
275,959 + +0.1
275,959 + -1.1
275,959 + -0.0
275,967 - +0.1
275,969 + -1.0
275,969 + -0.1
275,969 + +0.6
275,969 + -1.9
275,977 - +0.2
276,048 + -0.2
276,048 + -1.8
276,056 - -0.3
276,056 - -0.9
276,056 - -0.8
276,319 + +0.7
276,379 + -0.5
276,486 - -0.8
276,494 - -0.6
276,496 + +0.5
276,496 + -0.8
276,501 + -2.5
276,501 + -0.7
276,501 + +0.4
276,504 - -0.8
276,509 - +0.0
276,509 - -0.6
276,509 - +0.9
276,509 - -1.8
276,509 - -0.8
276,509 - -0.7
276,554 - +0.2
276,554 - -1.2
276,564 - +0.1
276,590 - -1.1
276,598 + +0.3
276,604 + +0.4
276,612 - +0.1
276,635 - -0.6
276,697 + -2.0
276,737 - MIT1002_00249 0.14 -0.6
276,760 - MIT1002_00249 0.18 -2.0
276,770 - MIT1002_00249 0.20 -0.3
276,794 - MIT1002_00249 0.25 -3.0
276,819 - MIT1002_00249 0.30 +0.3
276,819 - MIT1002_00249 0.30 -0.6
276,831 + MIT1002_00249 0.32 -0.3
276,925 + MIT1002_00249 0.50 +0.3
276,974 + MIT1002_00249 0.60 -0.7
277,036 - MIT1002_00249 0.72 -1.3
277,098 - MIT1002_00249 0.84 -3.3
277,133 + -0.4
277,141 - +1.0
277,156 + -1.3
277,158 + +2.2
277,158 - -0.3
277,313 + -0.1
277,316 - MIT1002_00250 0.10 -0.1
277,339 - MIT1002_00250 0.12 +0.4
277,344 - MIT1002_00250 0.12 -3.2
277,349 - MIT1002_00250 0.13 -1.0
277,349 - MIT1002_00250 0.13 -2.3
277,349 - MIT1002_00250 0.13 +0.3
277,434 + MIT1002_00250 0.19 +0.5
277,434 + MIT1002_00250 0.19 -0.1
277,454 - MIT1002_00250 0.20 +1.3
277,523 + MIT1002_00250 0.25 +0.6
277,531 - MIT1002_00250 0.26 +0.2
277,534 + MIT1002_00250 0.26 +0.2
277,534 + MIT1002_00250 0.26 -1.7
277,536 - MIT1002_00250 0.26 -0.1
277,539 + MIT1002_00250 0.27 +0.7
277,539 + MIT1002_00250 0.27 +0.1
277,539 + MIT1002_00250 0.27 -1.4
277,539 + MIT1002_00250 0.27 -0.3
277,539 + MIT1002_00250 0.27 -0.3
277,547 - MIT1002_00250 0.27 -0.8
277,547 - MIT1002_00250 0.27 +0.1
277,616 + MIT1002_00250 0.32 +0.2
277,616 + MIT1002_00250 0.32 -1.3
277,616 + MIT1002_00250 0.32 +0.8
277,616 + MIT1002_00250 0.32 -0.3
277,624 - MIT1002_00250 0.33 -0.6
277,664 - MIT1002_00250 0.36 +1.0
277,690 + MIT1002_00250 0.38 -0.0
277,919 - MIT1002_00250 0.54 +1.1
278,029 - MIT1002_00250 0.62 +0.6
278,069 - MIT1002_00250 0.65 -0.6
278,076 + MIT1002_00250 0.66 +0.9
278,088 + MIT1002_00250 0.67 +0.4

Or see this region's nucleotide sequence