Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00193

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00192 and MIT1002_00193 are separated by 179 nucleotidesMIT1002_00193 and MIT1002_00194 are separated by 78 nucleotides MIT1002_00192: MIT1002_00192 - hypothetical protein, at 209,860 to 210,813 _00192 MIT1002_00193: MIT1002_00193 - putative dienelactone hydrolase, at 210,993 to 212,279 _00193 MIT1002_00194: MIT1002_00194 - Alpha-galactosidase, at 212,358 to 214,487 _00194 Position (kb) 210 211 212 213Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 210.013 kb on - strand, within MIT1002_00192at 210.040 kb on - strand, within MIT1002_00192at 210.040 kb on - strand, within MIT1002_00192at 210.040 kb on - strand, within MIT1002_00192at 210.040 kb on - strand, within MIT1002_00192at 210.051 kb on + strand, within MIT1002_00192at 210.063 kb on + strand, within MIT1002_00192at 210.068 kb on + strand, within MIT1002_00192at 210.071 kb on - strand, within MIT1002_00192at 210.071 kb on - strand, within MIT1002_00192at 210.076 kb on - strand, within MIT1002_00192at 210.136 kb on - strand, within MIT1002_00192at 210.202 kb on + strand, within MIT1002_00192at 210.306 kb on + strand, within MIT1002_00192at 210.306 kb on + strand, within MIT1002_00192at 210.306 kb on + strand, within MIT1002_00192at 210.314 kb on - strand, within MIT1002_00192at 210.314 kb on - strand, within MIT1002_00192at 210.314 kb on - strand, within MIT1002_00192at 210.379 kb on + strand, within MIT1002_00192at 210.379 kb on - strand, within MIT1002_00192at 210.465 kb on - strand, within MIT1002_00192at 210.477 kb on - strand, within MIT1002_00192at 210.485 kb on + strand, within MIT1002_00192at 210.485 kb on + strand, within MIT1002_00192at 210.524 kb on + strand, within MIT1002_00192at 210.524 kb on + strand, within MIT1002_00192at 210.532 kb on - strand, within MIT1002_00192at 210.635 kb on + strand, within MIT1002_00192at 210.656 kb on + strand, within MIT1002_00192at 210.660 kb on - strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.670 kb on + strand, within MIT1002_00192at 210.678 kb on - strand, within MIT1002_00192at 210.678 kb on - strand, within MIT1002_00192at 210.678 kb on - strand, within MIT1002_00192at 210.678 kb on - strand, within MIT1002_00192at 210.678 kb on - strand, within MIT1002_00192at 210.678 kb on - strand, within MIT1002_00192at 210.678 kb on - strand, within MIT1002_00192at 210.701 kb on - strand, within MIT1002_00192at 210.722 kb on + strandat 210.756 kb on - strandat 210.795 kb on - strandat 211.021 kb on + strandat 211.034 kb on - strandat 211.034 kb on - strandat 211.039 kb on - strandat 211.052 kb on + strandat 211.163 kb on + strand, within MIT1002_00193at 211.259 kb on - strand, within MIT1002_00193at 211.293 kb on - strand, within MIT1002_00193at 211.293 kb on - strand, within MIT1002_00193at 211.295 kb on - strand, within MIT1002_00193at 211.310 kb on - strand, within MIT1002_00193at 211.319 kb on - strand, within MIT1002_00193at 211.336 kb on - strand, within MIT1002_00193at 211.384 kb on - strand, within MIT1002_00193at 211.421 kb on - strand, within MIT1002_00193at 211.433 kb on + strand, within MIT1002_00193at 211.435 kb on + strand, within MIT1002_00193at 211.435 kb on + strand, within MIT1002_00193at 211.548 kb on + strand, within MIT1002_00193at 211.590 kb on - strand, within MIT1002_00193at 211.592 kb on + strand, within MIT1002_00193at 211.657 kb on + strand, within MIT1002_00193at 211.749 kb on + strand, within MIT1002_00193at 211.749 kb on + strand, within MIT1002_00193at 211.757 kb on - strand, within MIT1002_00193at 211.762 kb on - strand, within MIT1002_00193at 211.780 kb on - strand, within MIT1002_00193at 211.795 kb on - strand, within MIT1002_00193at 211.831 kb on - strand, within MIT1002_00193at 211.938 kb on - strand, within MIT1002_00193at 211.938 kb on - strand, within MIT1002_00193at 211.997 kb on + strand, within MIT1002_00193at 211.997 kb on + strand, within MIT1002_00193at 212.002 kb on + strand, within MIT1002_00193at 212.010 kb on - strand, within MIT1002_00193at 212.017 kb on - strand, within MIT1002_00193at 212.072 kb on + strand, within MIT1002_00193at 212.097 kb on - strand, within MIT1002_00193at 212.147 kb on - strand, within MIT1002_00193at 212.180 kb on + strandat 212.230 kb on - strandat 212.250 kb on + strandat 212.265 kb on - strandat 212.303 kb on + strandat 212.303 kb on + strandat 212.303 kb on + strandat 212.311 kb on - strandat 212.311 kb on - strandat 212.316 kb on - strandat 212.355 kb on + strandat 212.363 kb on - strandat 212.374 kb on + strandat 212.374 kb on + strandat 212.379 kb on + strandat 212.382 kb on - strandat 212.481 kb on + strandat 212.570 kb on - strandat 212.579 kb on - strand, within MIT1002_00194at 212.593 kb on - strand, within MIT1002_00194at 212.623 kb on + strand, within MIT1002_00194at 212.767 kb on - strand, within MIT1002_00194at 212.767 kb on - strand, within MIT1002_00194at 212.775 kb on + strand, within MIT1002_00194at 212.776 kb on - strand, within MIT1002_00194at 212.776 kb on - strand, within MIT1002_00194at 212.925 kb on + strand, within MIT1002_00194at 212.950 kb on + strand, within MIT1002_00194at 212.965 kb on + strand, within MIT1002_00194at 212.994 kb on + strand, within MIT1002_00194at 213.002 kb on - strand, within MIT1002_00194at 213.040 kb on + strand, within MIT1002_00194at 213.040 kb on + strand, within MIT1002_00194at 213.040 kb on + strand, within MIT1002_00194at 213.040 kb on + strand, within MIT1002_00194at 213.040 kb on + strand, within MIT1002_00194at 213.048 kb on - strand, within MIT1002_00194at 213.053 kb on + strand, within MIT1002_00194at 213.053 kb on + strand, within MIT1002_00194at 213.061 kb on - strand, within MIT1002_00194at 213.061 kb on - strand, within MIT1002_00194at 213.061 kb on - strand, within MIT1002_00194at 213.102 kb on - strand, within MIT1002_00194at 213.108 kb on - strand, within MIT1002_00194at 213.127 kb on - strand, within MIT1002_00194at 213.140 kb on - strand, within MIT1002_00194at 213.156 kb on + strand, within MIT1002_00194at 213.177 kb on - strand, within MIT1002_00194at 213.201 kb on + strand, within MIT1002_00194at 213.210 kb on + strand, within MIT1002_00194at 213.212 kb on + strand, within MIT1002_00194at 213.212 kb on + strand, within MIT1002_00194at 213.220 kb on - strand, within MIT1002_00194at 213.220 kb on - strand, within MIT1002_00194at 213.265 kb on - strand, within MIT1002_00194

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
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210,013 - MIT1002_00192 0.16 +0.7
210,040 - MIT1002_00192 0.19 +0.2
210,040 - MIT1002_00192 0.19 -0.5
210,040 - MIT1002_00192 0.19 +0.0
210,040 - MIT1002_00192 0.19 +2.2
210,051 + MIT1002_00192 0.20 -0.4
210,063 + MIT1002_00192 0.21 -0.7
210,068 + MIT1002_00192 0.22 +1.1
210,071 - MIT1002_00192 0.22 +1.2
210,071 - MIT1002_00192 0.22 -0.3
210,076 - MIT1002_00192 0.23 +0.4
210,136 - MIT1002_00192 0.29 -1.1
210,202 + MIT1002_00192 0.36 +0.5
210,306 + MIT1002_00192 0.47 -1.2
210,306 + MIT1002_00192 0.47 +0.4
210,306 + MIT1002_00192 0.47 +1.4
210,314 - MIT1002_00192 0.48 -0.4
210,314 - MIT1002_00192 0.48 -0.3
210,314 - MIT1002_00192 0.48 -0.0
210,379 + MIT1002_00192 0.54 -1.2
210,379 - MIT1002_00192 0.54 -0.1
210,465 - MIT1002_00192 0.63 -0.6
210,477 - MIT1002_00192 0.65 -0.1
210,485 + MIT1002_00192 0.66 +1.2
210,485 + MIT1002_00192 0.66 +0.9
210,524 + MIT1002_00192 0.70 +0.6
210,524 + MIT1002_00192 0.70 +0.0
210,532 - MIT1002_00192 0.70 -0.7
210,635 + MIT1002_00192 0.81 -0.1
210,656 + MIT1002_00192 0.83 -0.3
210,660 - MIT1002_00192 0.84 -0.2
210,670 + MIT1002_00192 0.85 +0.0
210,670 + MIT1002_00192 0.85 +0.0
210,670 + MIT1002_00192 0.85 -0.4
210,670 + MIT1002_00192 0.85 +0.6
210,670 + MIT1002_00192 0.85 +0.7
210,670 + MIT1002_00192 0.85 -0.4
210,670 + MIT1002_00192 0.85 -0.4
210,670 + MIT1002_00192 0.85 +0.4
210,670 + MIT1002_00192 0.85 +0.6
210,678 - MIT1002_00192 0.86 +0.0
210,678 - MIT1002_00192 0.86 +0.8
210,678 - MIT1002_00192 0.86 +0.3
210,678 - MIT1002_00192 0.86 +0.8
210,678 - MIT1002_00192 0.86 -0.2
210,678 - MIT1002_00192 0.86 -0.6
210,678 - MIT1002_00192 0.86 -0.5
210,701 - MIT1002_00192 0.88 +0.1
210,722 + -0.5
210,756 - -0.1
210,795 - -1.0
211,021 + -0.1
211,034 - -0.8
211,034 - -0.1
211,039 - -1.1
211,052 + +0.6
211,163 + MIT1002_00193 0.13 +0.0
211,259 - MIT1002_00193 0.21 -0.3
211,293 - MIT1002_00193 0.23 -0.3
211,293 - MIT1002_00193 0.23 -0.2
211,295 - MIT1002_00193 0.23 -0.8
211,310 - MIT1002_00193 0.25 +0.2
211,319 - MIT1002_00193 0.25 +0.4
211,336 - MIT1002_00193 0.27 -0.4
211,384 - MIT1002_00193 0.30 +0.2
211,421 - MIT1002_00193 0.33 -1.5
211,433 + MIT1002_00193 0.34 +0.2
211,435 + MIT1002_00193 0.34 -0.8
211,435 + MIT1002_00193 0.34 +2.8
211,548 + MIT1002_00193 0.43 +1.2
211,590 - MIT1002_00193 0.46 -0.7
211,592 + MIT1002_00193 0.47 -0.6
211,657 + MIT1002_00193 0.52 -0.2
211,749 + MIT1002_00193 0.59 -0.1
211,749 + MIT1002_00193 0.59 +0.5
211,757 - MIT1002_00193 0.59 -0.0
211,762 - MIT1002_00193 0.60 -0.3
211,780 - MIT1002_00193 0.61 -0.5
211,795 - MIT1002_00193 0.62 -0.4
211,831 - MIT1002_00193 0.65 -0.8
211,938 - MIT1002_00193 0.73 -0.6
211,938 - MIT1002_00193 0.73 -1.2
211,997 + MIT1002_00193 0.78 +0.6
211,997 + MIT1002_00193 0.78 +1.4
212,002 + MIT1002_00193 0.78 +0.3
212,010 - MIT1002_00193 0.79 +0.3
212,017 - MIT1002_00193 0.80 -0.2
212,072 + MIT1002_00193 0.84 -0.1
212,097 - MIT1002_00193 0.86 -0.3
212,147 - MIT1002_00193 0.90 -0.3
212,180 + -0.1
212,230 - -1.3
212,250 + +0.3
212,265 - +0.5
212,303 + -0.2
212,303 + -0.2
212,303 + +0.4
212,311 - +0.2
212,311 - +1.6
212,316 - -0.2
212,355 + -5.6
212,363 - +1.1
212,374 + -0.0
212,374 + -1.4
212,379 + -1.3
212,382 - +0.7
212,481 + -1.7
212,570 - -0.3
212,579 - MIT1002_00194 0.10 -0.4
212,593 - MIT1002_00194 0.11 +0.6
212,623 + MIT1002_00194 0.12 -1.2
212,767 - MIT1002_00194 0.19 -0.4
212,767 - MIT1002_00194 0.19 +0.0
212,775 + MIT1002_00194 0.20 +0.5
212,776 - MIT1002_00194 0.20 +0.2
212,776 - MIT1002_00194 0.20 -0.0
212,925 + MIT1002_00194 0.27 -0.4
212,950 + MIT1002_00194 0.28 -0.9
212,965 + MIT1002_00194 0.28 +0.5
212,994 + MIT1002_00194 0.30 +0.4
213,002 - MIT1002_00194 0.30 -0.1
213,040 + MIT1002_00194 0.32 +0.3
213,040 + MIT1002_00194 0.32 +0.3
213,040 + MIT1002_00194 0.32 +2.6
213,040 + MIT1002_00194 0.32 +0.6
213,040 + MIT1002_00194 0.32 -1.2
213,048 - MIT1002_00194 0.32 -1.0
213,053 + MIT1002_00194 0.33 -0.7
213,053 + MIT1002_00194 0.33 +0.6
213,061 - MIT1002_00194 0.33 +0.5
213,061 - MIT1002_00194 0.33 +0.5
213,061 - MIT1002_00194 0.33 -2.6
213,102 - MIT1002_00194 0.35 -0.0
213,108 - MIT1002_00194 0.35 -0.8
213,127 - MIT1002_00194 0.36 -1.1
213,140 - MIT1002_00194 0.37 +2.2
213,156 + MIT1002_00194 0.37 +0.4
213,177 - MIT1002_00194 0.38 -1.1
213,201 + MIT1002_00194 0.40 -0.7
213,210 + MIT1002_00194 0.40 +0.6
213,212 + MIT1002_00194 0.40 +0.1
213,212 + MIT1002_00194 0.40 -0.6
213,220 - MIT1002_00194 0.40 -1.4
213,220 - MIT1002_00194 0.40 +0.4
213,265 - MIT1002_00194 0.43 -1.0

Or see this region's nucleotide sequence