Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00169 and MIT1002_00170 are separated by 130 nucleotides MIT1002_00170 and MIT1002_00171 are separated by 141 nucleotides MIT1002_00171 and MIT1002_00172 are separated by 27 nucleotides MIT1002_00172 and MIT1002_00173 overlap by 4 nucleotides
MIT1002_00169: MIT1002_00169 - Fructose-1,6-bisphosphatase class 1, at 184,996 to 185,973
_00169
MIT1002_00170: MIT1002_00170 - Inorganic pyrophosphatase, at 186,104 to 186,634
_00170
MIT1002_00171: MIT1002_00171 - hypothetical protein, at 186,776 to 187,261
_00171
MIT1002_00172: MIT1002_00172 - 4-hydroxy-tetrahydrodipicolinate synthase, at 187,289 to 188,236
_00172
MIT1002_00173: MIT1002_00173 - hypothetical protein, at 188,233 to 188,931
_00173
Position (kb) 186
187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 186.008 kb on + strand at 186.603 kb on + strand at 186.643 kb on + strand at 186.651 kb on - strand at 186.651 kb on - strand at 186.651 kb on - strand at 186.670 kb on + strand at 186.670 kb on + strand at 186.764 kb on + strand at 186.769 kb on + strand at 186.772 kb on - strand at 186.782 kb on - strand at 186.859 kb on - strand, within MIT1002_00171 at 186.905 kb on - strand, within MIT1002_00171 at 186.905 kb on - strand, within MIT1002_00171 at 186.905 kb on - strand, within MIT1002_00171 at 186.916 kb on + strand, within MIT1002_00171 at 186.923 kb on + strand, within MIT1002_00171 at 187.022 kb on + strand, within MIT1002_00171 at 187.044 kb on + strand, within MIT1002_00171 at 187.059 kb on - strand, within MIT1002_00171 at 187.059 kb on - strand, within MIT1002_00171 at 187.059 kb on - strand, within MIT1002_00171 at 187.184 kb on + strand, within MIT1002_00171 at 187.262 kb on + strand at 187.263 kb on + strand at 187.416 kb on + strand, within MIT1002_00172 at 187.416 kb on + strand, within MIT1002_00172 at 187.416 kb on + strand, within MIT1002_00172 at 187.419 kb on - strand, within MIT1002_00172 at 187.419 kb on - strand, within MIT1002_00172 at 187.423 kb on + strand, within MIT1002_00172 at 187.423 kb on + strand, within MIT1002_00172 at 187.423 kb on + strand, within MIT1002_00172 at 187.423 kb on + strand, within MIT1002_00172 at 187.423 kb on + strand, within MIT1002_00172 at 187.424 kb on - strand, within MIT1002_00172 at 187.424 kb on - strand, within MIT1002_00172 at 187.431 kb on - strand, within MIT1002_00172 at 187.431 kb on - strand, within MIT1002_00172 at 187.431 kb on - strand, within MIT1002_00172 at 187.431 kb on - strand, within MIT1002_00172 at 187.509 kb on + strand, within MIT1002_00172 at 187.535 kb on - strand, within MIT1002_00172 at 187.583 kb on - strand, within MIT1002_00172 at 187.585 kb on - strand, within MIT1002_00172 at 187.609 kb on + strand, within MIT1002_00172 at 187.664 kb on + strand, within MIT1002_00172 at 187.726 kb on - strand, within MIT1002_00172 at 187.792 kb on - strand, within MIT1002_00172 at 187.799 kb on - strand, within MIT1002_00172 at 187.827 kb on + strand, within MIT1002_00172 at 187.902 kb on - strand, within MIT1002_00172 at 187.906 kb on - strand, within MIT1002_00172 at 187.939 kb on - strand, within MIT1002_00172 at 187.950 kb on - strand, within MIT1002_00172 at 187.967 kb on + strand, within MIT1002_00172 at 187.975 kb on - strand, within MIT1002_00172 at 187.975 kb on - strand, within MIT1002_00172 at 187.992 kb on + strand, within MIT1002_00172 at 188.000 kb on - strand, within MIT1002_00172 at 188.020 kb on + strand, within MIT1002_00172 at 188.031 kb on - strand, within MIT1002_00172 at 188.110 kb on + strand, within MIT1002_00172 at 188.147 kb on - strand at 188.167 kb on + strand at 188.167 kb on + strand at 188.175 kb on - strand at 188.231 kb on + strand at 188.239 kb on - strand at 188.243 kb on + strand at 188.251 kb on - strand at 188.251 kb on - strand at 188.261 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2 remove 186,008 + -2.1 186,603 + -1.5 186,643 + -1.5 186,651 - -0.9 186,651 - -0.1 186,651 - +0.5 186,670 + -0.3 186,670 + +0.2 186,764 + +0.4 186,769 + +0.6 186,772 - +0.6 186,782 - +2.1 186,859 - MIT1002_00171 0.17 -0.1 186,905 - MIT1002_00171 0.27 +0.3 186,905 - MIT1002_00171 0.27 +0.6 186,905 - MIT1002_00171 0.27 +0.0 186,916 + MIT1002_00171 0.29 -0.2 186,923 + MIT1002_00171 0.30 -0.1 187,022 + MIT1002_00171 0.51 +0.0 187,044 + MIT1002_00171 0.55 +0.5 187,059 - MIT1002_00171 0.58 +1.3 187,059 - MIT1002_00171 0.58 +0.2 187,059 - MIT1002_00171 0.58 +0.8 187,184 + MIT1002_00171 0.84 +1.0 187,262 + +0.7 187,263 + -0.5 187,416 + MIT1002_00172 0.13 -0.0 187,416 + MIT1002_00172 0.13 +0.5 187,416 + MIT1002_00172 0.13 +0.1 187,419 - MIT1002_00172 0.14 +0.2 187,419 - MIT1002_00172 0.14 +0.4 187,423 + MIT1002_00172 0.14 +0.1 187,423 + MIT1002_00172 0.14 -0.1 187,423 + MIT1002_00172 0.14 +1.0 187,423 + MIT1002_00172 0.14 +0.6 187,423 + MIT1002_00172 0.14 +0.2 187,424 - MIT1002_00172 0.14 +0.7 187,424 - MIT1002_00172 0.14 +0.7 187,431 - MIT1002_00172 0.15 +0.7 187,431 - MIT1002_00172 0.15 +0.2 187,431 - MIT1002_00172 0.15 -0.5 187,431 - MIT1002_00172 0.15 +0.3 187,509 + MIT1002_00172 0.23 -0.8 187,535 - MIT1002_00172 0.26 -0.4 187,583 - MIT1002_00172 0.31 -0.0 187,585 - MIT1002_00172 0.31 +1.5 187,609 + MIT1002_00172 0.34 +1.2 187,664 + MIT1002_00172 0.40 +0.2 187,726 - MIT1002_00172 0.46 -0.4 187,792 - MIT1002_00172 0.53 +0.1 187,799 - MIT1002_00172 0.54 +2.5 187,827 + MIT1002_00172 0.57 -0.8 187,902 - MIT1002_00172 0.65 +0.6 187,906 - MIT1002_00172 0.65 -2.1 187,939 - MIT1002_00172 0.69 +0.3 187,950 - MIT1002_00172 0.70 +1.2 187,967 + MIT1002_00172 0.72 -3.3 187,975 - MIT1002_00172 0.72 -0.1 187,975 - MIT1002_00172 0.72 +0.1 187,992 + MIT1002_00172 0.74 -0.1 188,000 - MIT1002_00172 0.75 +0.6 188,020 + MIT1002_00172 0.77 +0.2 188,031 - MIT1002_00172 0.78 -2.4 188,110 + MIT1002_00172 0.87 -1.7 188,147 - -0.5 188,167 + +0.5 188,167 + +0.9 188,175 - -0.2 188,231 + -0.4 188,239 - -0.1 188,243 + -1.0 188,251 - +1.0 188,251 - +0.1 188,261 - +0.0
Or see this region's nucleotide sequence