Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00115

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00114 and MIT1002_00115 are separated by 9 nucleotidesMIT1002_00115 and MIT1002_00116 overlap by 4 nucleotides MIT1002_00114: MIT1002_00114 - hypothetical protein, at 123,154 to 123,963 _00114 MIT1002_00115: MIT1002_00115 - Iron(III)-binding periplasmic protein, at 123,973 to 125,007 _00115 MIT1002_00116: MIT1002_00116 - Spermidine/putrescine transport system permease protein PotB, at 125,004 to 126,524 _00116 Position (kb) 123 124 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1at 122.988 kb on + strandat 123.047 kb on + strandat 123.214 kb on + strandat 123.298 kb on + strand, within MIT1002_00114at 123.301 kb on + strand, within MIT1002_00114at 123.306 kb on - strand, within MIT1002_00114at 123.528 kb on - strand, within MIT1002_00114at 123.827 kb on - strand, within MIT1002_00114at 123.905 kb on - strandat 123.905 kb on - strandat 123.922 kb on + strandat 123.968 kb on + strandat 123.968 kb on + strandat 124.324 kb on + strand, within MIT1002_00115at 124.332 kb on - strand, within MIT1002_00115at 124.645 kb on - strand, within MIT1002_00115at 124.687 kb on - strand, within MIT1002_00115at 125.096 kb on - strandat 125.138 kb on - strandat 125.355 kb on + strand, within MIT1002_00116at 126.004 kb on + strand, within MIT1002_00116

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
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122,988 + -0.7
123,047 + +0.4
123,214 + -2.2
123,298 + MIT1002_00114 0.18 -1.4
123,301 + MIT1002_00114 0.18 -3.4
123,306 - MIT1002_00114 0.19 -0.8
123,528 - MIT1002_00114 0.46 -2.1
123,827 - MIT1002_00114 0.83 -1.4
123,905 - -1.4
123,905 - -1.1
123,922 + -1.6
123,968 + +0.2
123,968 + -0.8
124,324 + MIT1002_00115 0.34 -2.5
124,332 - MIT1002_00115 0.35 -2.4
124,645 - MIT1002_00115 0.65 -1.9
124,687 - MIT1002_00115 0.69 -2.1
125,096 - -1.4
125,138 - -1.4
125,355 + MIT1002_00116 0.23 -1.6
126,004 + MIT1002_00116 0.66 -1.4

Or see this region's nucleotide sequence