Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00090

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00089 and MIT1002_00090 are separated by 2 nucleotidesMIT1002_00090 and MIT1002_00091 are separated by 98 nucleotides MIT1002_00089: MIT1002_00089 - putative ATPase, at 96,038 to 97,423 _00089 MIT1002_00090: MIT1002_00090 - hypothetical protein, at 97,426 to 98,538 _00090 MIT1002_00091: MIT1002_00091 - hypothetical protein, at 98,637 to 99,863 _00091 Position (kb) 97 98 99Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 96.510 kb on - strand, within MIT1002_00089at 96.531 kb on - strand, within MIT1002_00089at 96.544 kb on + strand, within MIT1002_00089at 96.544 kb on + strand, within MIT1002_00089at 96.544 kb on + strand, within MIT1002_00089at 96.544 kb on + strand, within MIT1002_00089at 96.544 kb on + strand, within MIT1002_00089at 96.552 kb on - strand, within MIT1002_00089at 96.552 kb on - strand, within MIT1002_00089at 96.552 kb on - strand, within MIT1002_00089at 96.631 kb on - strand, within MIT1002_00089at 96.676 kb on + strand, within MIT1002_00089at 96.688 kb on + strand, within MIT1002_00089at 96.690 kb on - strand, within MIT1002_00089at 96.735 kb on + strand, within MIT1002_00089at 96.757 kb on - strand, within MIT1002_00089at 96.843 kb on - strand, within MIT1002_00089at 96.857 kb on - strand, within MIT1002_00089at 96.915 kb on + strand, within MIT1002_00089at 96.921 kb on + strand, within MIT1002_00089at 96.921 kb on + strand, within MIT1002_00089at 96.948 kb on - strand, within MIT1002_00089at 96.983 kb on + strand, within MIT1002_00089at 97.083 kb on + strand, within MIT1002_00089at 97.083 kb on + strand, within MIT1002_00089at 97.147 kb on + strand, within MIT1002_00089at 97.227 kb on - strand, within MIT1002_00089at 97.257 kb on + strand, within MIT1002_00089at 97.262 kb on - strand, within MIT1002_00089at 97.288 kb on - strandat 97.309 kb on + strandat 97.334 kb on - strandat 97.350 kb on + strandat 97.408 kb on + strandat 97.408 kb on + strandat 97.408 kb on + strandat 97.408 kb on + strandat 97.416 kb on - strandat 97.416 kb on - strandat 97.418 kb on + strandat 97.438 kb on + strandat 97.445 kb on - strandat 97.457 kb on + strandat 97.483 kb on - strandat 97.522 kb on + strandat 97.575 kb on + strand, within MIT1002_00090at 97.629 kb on - strand, within MIT1002_00090at 97.630 kb on - strand, within MIT1002_00090at 97.638 kb on + strand, within MIT1002_00090at 97.646 kb on - strand, within MIT1002_00090at 97.707 kb on + strand, within MIT1002_00090at 97.707 kb on + strand, within MIT1002_00090at 97.707 kb on + strand, within MIT1002_00090at 97.715 kb on - strand, within MIT1002_00090at 97.715 kb on - strand, within MIT1002_00090at 97.732 kb on - strand, within MIT1002_00090at 97.819 kb on + strand, within MIT1002_00090at 97.950 kb on + strand, within MIT1002_00090at 97.978 kb on - strand, within MIT1002_00090at 98.042 kb on + strand, within MIT1002_00090at 98.050 kb on - strand, within MIT1002_00090at 98.076 kb on + strand, within MIT1002_00090at 98.076 kb on + strand, within MIT1002_00090at 98.076 kb on + strand, within MIT1002_00090at 98.084 kb on - strand, within MIT1002_00090at 98.084 kb on - strand, within MIT1002_00090at 98.084 kb on - strand, within MIT1002_00090at 98.093 kb on + strand, within MIT1002_00090at 98.102 kb on + strand, within MIT1002_00090at 98.135 kb on + strand, within MIT1002_00090at 98.144 kb on + strand, within MIT1002_00090at 98.169 kb on + strand, within MIT1002_00090at 98.169 kb on + strand, within MIT1002_00090at 98.177 kb on - strand, within MIT1002_00090at 98.582 kb on + strandat 98.582 kb on + strandat 98.582 kb on + strandat 98.590 kb on - strandat 98.590 kb on - strandat 98.614 kb on - strandat 98.616 kb on + strandat 98.622 kb on - strandat 98.624 kb on - strandat 98.655 kb on + strandat 98.671 kb on + strandat 98.676 kb on + strandat 98.729 kb on + strandat 98.745 kb on + strandat 98.745 kb on + strandat 98.745 kb on + strandat 98.745 kb on + strandat 98.746 kb on - strandat 98.753 kb on - strandat 98.753 kb on - strandat 98.753 kb on - strandat 98.753 kb on - strandat 98.766 kb on + strand, within MIT1002_00091at 98.774 kb on - strand, within MIT1002_00091at 98.774 kb on - strand, within MIT1002_00091at 98.782 kb on + strand, within MIT1002_00091at 98.791 kb on + strand, within MIT1002_00091at 98.804 kb on + strand, within MIT1002_00091at 98.812 kb on - strand, within MIT1002_00091at 98.812 kb on - strand, within MIT1002_00091at 98.812 kb on - strand, within MIT1002_00091at 98.821 kb on + strand, within MIT1002_00091at 98.827 kb on - strand, within MIT1002_00091at 98.837 kb on - strand, within MIT1002_00091at 98.906 kb on + strand, within MIT1002_00091at 98.906 kb on + strand, within MIT1002_00091at 98.906 kb on + strand, within MIT1002_00091at 98.906 kb on + strand, within MIT1002_00091at 98.911 kb on + strand, within MIT1002_00091at 98.914 kb on - strand, within MIT1002_00091at 98.914 kb on - strand, within MIT1002_00091at 98.914 kb on - strand, within MIT1002_00091at 98.914 kb on - strand, within MIT1002_00091at 98.914 kb on - strand, within MIT1002_00091at 98.914 kb on - strand, within MIT1002_00091at 98.916 kb on + strand, within MIT1002_00091at 98.916 kb on + strand, within MIT1002_00091at 98.916 kb on + strand, within MIT1002_00091at 98.920 kb on - strand, within MIT1002_00091at 98.929 kb on - strand, within MIT1002_00091at 98.929 kb on - strand, within MIT1002_00091at 98.936 kb on + strand, within MIT1002_00091at 98.936 kb on + strand, within MIT1002_00091at 98.972 kb on + strand, within MIT1002_00091at 99.035 kb on - strand, within MIT1002_00091at 99.075 kb on + strand, within MIT1002_00091at 99.076 kb on + strand, within MIT1002_00091at 99.083 kb on - strand, within MIT1002_00091at 99.084 kb on - strand, within MIT1002_00091at 99.098 kb on + strand, within MIT1002_00091at 99.180 kb on + strand, within MIT1002_00091at 99.215 kb on + strand, within MIT1002_00091at 99.222 kb on + strand, within MIT1002_00091at 99.223 kb on + strand, within MIT1002_00091at 99.223 kb on + strand, within MIT1002_00091at 99.252 kb on - strand, within MIT1002_00091at 99.348 kb on - strand, within MIT1002_00091at 99.367 kb on + strand, within MIT1002_00091at 99.377 kb on + strand, within MIT1002_00091at 99.414 kb on - strand, within MIT1002_00091at 99.419 kb on - strand, within MIT1002_00091at 99.451 kb on - strand, within MIT1002_00091at 99.461 kb on - strand, within MIT1002_00091at 99.461 kb on - strand, within MIT1002_00091at 99.483 kb on + strand, within MIT1002_00091

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2
remove
96,510 - MIT1002_00089 0.34 -0.4
96,531 - MIT1002_00089 0.36 -0.2
96,544 + MIT1002_00089 0.37 +0.9
96,544 + MIT1002_00089 0.37 -0.7
96,544 + MIT1002_00089 0.37 +1.4
96,544 + MIT1002_00089 0.37 +0.4
96,544 + MIT1002_00089 0.37 +0.7
96,552 - MIT1002_00089 0.37 +2.0
96,552 - MIT1002_00089 0.37 +1.0
96,552 - MIT1002_00089 0.37 -0.2
96,631 - MIT1002_00089 0.43 -0.8
96,676 + MIT1002_00089 0.46 +0.1
96,688 + MIT1002_00089 0.47 -0.1
96,690 - MIT1002_00089 0.47 -1.4
96,735 + MIT1002_00089 0.50 +1.2
96,757 - MIT1002_00089 0.52 +0.1
96,843 - MIT1002_00089 0.58 +0.4
96,857 - MIT1002_00089 0.59 +0.8
96,915 + MIT1002_00089 0.63 -0.1
96,921 + MIT1002_00089 0.64 -0.4
96,921 + MIT1002_00089 0.64 -1.2
96,948 - MIT1002_00089 0.66 -0.8
96,983 + MIT1002_00089 0.68 +0.7
97,083 + MIT1002_00089 0.75 +0.0
97,083 + MIT1002_00089 0.75 +0.1
97,147 + MIT1002_00089 0.80 -0.2
97,227 - MIT1002_00089 0.86 +0.8
97,257 + MIT1002_00089 0.88 +0.1
97,262 - MIT1002_00089 0.88 +1.4
97,288 - +0.4
97,309 + -0.3
97,334 - +0.4
97,350 + -2.6
97,408 + -0.1
97,408 + +1.3
97,408 + -0.3
97,408 + -1.2
97,416 - +0.6
97,416 - -3.5
97,418 + +0.9
97,438 + +0.3
97,445 - +0.8
97,457 + -0.8
97,483 - +0.6
97,522 + +0.5
97,575 + MIT1002_00090 0.13 +0.1
97,629 - MIT1002_00090 0.18 -0.5
97,630 - MIT1002_00090 0.18 -0.0
97,638 + MIT1002_00090 0.19 -1.8
97,646 - MIT1002_00090 0.20 +0.4
97,707 + MIT1002_00090 0.25 +0.2
97,707 + MIT1002_00090 0.25 -1.9
97,707 + MIT1002_00090 0.25 +0.7
97,715 - MIT1002_00090 0.26 -0.2
97,715 - MIT1002_00090 0.26 -0.3
97,732 - MIT1002_00090 0.27 +0.2
97,819 + MIT1002_00090 0.35 -0.0
97,950 + MIT1002_00090 0.47 -0.2
97,978 - MIT1002_00090 0.50 -0.4
98,042 + MIT1002_00090 0.55 -0.9
98,050 - MIT1002_00090 0.56 +0.6
98,076 + MIT1002_00090 0.58 +0.6
98,076 + MIT1002_00090 0.58 -0.3
98,076 + MIT1002_00090 0.58 -3.5
98,084 - MIT1002_00090 0.59 -0.1
98,084 - MIT1002_00090 0.59 -0.6
98,084 - MIT1002_00090 0.59 -0.7
98,093 + MIT1002_00090 0.60 -0.2
98,102 + MIT1002_00090 0.61 -0.5
98,135 + MIT1002_00090 0.64 -2.9
98,144 + MIT1002_00090 0.65 -0.4
98,169 + MIT1002_00090 0.67 +1.0
98,169 + MIT1002_00090 0.67 +0.2
98,177 - MIT1002_00090 0.67 +0.1
98,582 + -0.8
98,582 + +0.9
98,582 + -0.0
98,590 - -0.0
98,590 - +0.6
98,614 - +0.1
98,616 + +1.5
98,622 - +0.3
98,624 - +0.1
98,655 + +0.6
98,671 + -0.1
98,676 + -1.8
98,729 + +0.5
98,745 + +0.9
98,745 + -0.9
98,745 + -0.5
98,745 + -0.1
98,746 - -0.4
98,753 - -0.2
98,753 - +0.2
98,753 - +0.4
98,753 - +0.2
98,766 + MIT1002_00091 0.11 -0.3
98,774 - MIT1002_00091 0.11 +1.3
98,774 - MIT1002_00091 0.11 -0.4
98,782 + MIT1002_00091 0.12 -0.3
98,791 + MIT1002_00091 0.13 -0.5
98,804 + MIT1002_00091 0.14 +0.6
98,812 - MIT1002_00091 0.14 +0.6
98,812 - MIT1002_00091 0.14 -0.4
98,812 - MIT1002_00091 0.14 +0.4
98,821 + MIT1002_00091 0.15 -0.2
98,827 - MIT1002_00091 0.15 -0.2
98,837 - MIT1002_00091 0.16 +0.8
98,906 + MIT1002_00091 0.22 -1.9
98,906 + MIT1002_00091 0.22 -0.3
98,906 + MIT1002_00091 0.22 +0.0
98,906 + MIT1002_00091 0.22 -0.6
98,911 + MIT1002_00091 0.22 -0.1
98,914 - MIT1002_00091 0.23 +0.5
98,914 - MIT1002_00091 0.23 -1.0
98,914 - MIT1002_00091 0.23 +0.3
98,914 - MIT1002_00091 0.23 +0.3
98,914 - MIT1002_00091 0.23 +0.0
98,914 - MIT1002_00091 0.23 -0.1
98,916 + MIT1002_00091 0.23 -0.0
98,916 + MIT1002_00091 0.23 -0.9
98,916 + MIT1002_00091 0.23 -0.2
98,920 - MIT1002_00091 0.23 -0.1
98,929 - MIT1002_00091 0.24 -1.0
98,929 - MIT1002_00091 0.24 +0.3
98,936 + MIT1002_00091 0.24 -0.4
98,936 + MIT1002_00091 0.24 -2.4
98,972 + MIT1002_00091 0.27 -1.2
99,035 - MIT1002_00091 0.32 -0.4
99,075 + MIT1002_00091 0.36 -0.6
99,076 + MIT1002_00091 0.36 -2.5
99,083 - MIT1002_00091 0.36 +0.8
99,084 - MIT1002_00091 0.36 -0.6
99,098 + MIT1002_00091 0.38 -1.4
99,180 + MIT1002_00091 0.44 -1.4
99,215 + MIT1002_00091 0.47 -0.2
99,222 + MIT1002_00091 0.48 +0.6
99,223 + MIT1002_00091 0.48 -0.8
99,223 + MIT1002_00091 0.48 +0.7
99,252 - MIT1002_00091 0.50 +1.4
99,348 - MIT1002_00091 0.58 +0.6
99,367 + MIT1002_00091 0.59 +0.5
99,377 + MIT1002_00091 0.60 +0.0
99,414 - MIT1002_00091 0.63 -1.2
99,419 - MIT1002_00091 0.64 -0.8
99,451 - MIT1002_00091 0.66 -1.0
99,461 - MIT1002_00091 0.67 -0.2
99,461 - MIT1002_00091 0.67 -0.3
99,483 + MIT1002_00091 0.69 -0.1

Or see this region's nucleotide sequence