Experiment: Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS44640 and QEN71_RS44645 are separated by 722 nucleotides QEN71_RS44645 and QEN71_RS44650 are separated by 78 nucleotides QEN71_RS44650 and QEN71_RS44655 are separated by 134 nucleotides
QEN71_RS44640: QEN71_RS44640 - transposase, at 394,033 to 394,503
_RS44640
QEN71_RS44645: QEN71_RS44645 - IS5/IS1182 family transposase, at 395,226 to 395,362
_RS44645
QEN71_RS44650: QEN71_RS44650 - IS5 family transposase, at 395,441 to 396,247
_RS44650
QEN71_RS44655: QEN71_RS44655 - transposase, at 396,382 to 397,014
_RS44655
Position (kb) 395
396
397 Strain fitness (log2 ratio) -2
-1
0
1
2 at 394.446 kb on + strand, within QEN71_RS44640 at 394.446 kb on + strand, within QEN71_RS44640 at 394.528 kb on + strand at 394.528 kb on + strand at 394.528 kb on + strand at 394.529 kb on - strand at 394.529 kb on - strand at 394.529 kb on - strand at 394.546 kb on - strand at 394.554 kb on + strand at 394.573 kb on + strand at 394.574 kb on - strand at 394.660 kb on + strand at 394.661 kb on - strand at 394.759 kb on - strand at 394.853 kb on + strand at 394.853 kb on + strand at 394.853 kb on + strand at 394.853 kb on + strand at 394.854 kb on - strand at 394.854 kb on - strand at 394.854 kb on - strand at 394.916 kb on + strand at 394.916 kb on + strand at 394.924 kb on + strand at 394.924 kb on + strand at 394.924 kb on + strand at 394.925 kb on - strand at 394.925 kb on - strand at 394.925 kb on - strand at 394.925 kb on - strand at 394.925 kb on - strand at 394.925 kb on - strand at 394.925 kb on - strand at 394.926 kb on + strand at 394.935 kb on + strand at 394.967 kb on + strand at 394.968 kb on - strand at 394.968 kb on - strand at 395.029 kb on + strand at 395.029 kb on + strand at 395.030 kb on - strand at 395.076 kb on - strand at 395.085 kb on + strand at 395.085 kb on + strand at 395.096 kb on + strand at 395.096 kb on + strand at 395.096 kb on + strand at 395.096 kb on + strand at 395.096 kb on + strand at 395.103 kb on + strand at 395.103 kb on + strand at 395.194 kb on + strand at 395.195 kb on - strand at 395.208 kb on + strand at 395.209 kb on - strand at 395.209 kb on - strand at 395.335 kb on + strand, within QEN71_RS44645 at 395.335 kb on + strand, within QEN71_RS44645 at 395.336 kb on - strand, within QEN71_RS44645 at 395.377 kb on + strand at 396.208 kb on + strand at 396.208 kb on + strand at 396.208 kb on + strand at 396.255 kb on + strand at 396.256 kb on - strand at 396.313 kb on + strand at 396.313 kb on + strand at 396.313 kb on + strand at 396.314 kb on - strand at 396.315 kb on + strand at 396.315 kb on + strand at 396.315 kb on + strand at 396.316 kb on - strand at 396.316 kb on - strand at 396.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 394,446 + QEN71_RS44640 0.88 -0.3 394,446 + QEN71_RS44640 0.88 -0.4 394,528 + -1.8 394,528 + -0.2 394,528 + -0.4 394,529 - +0.7 394,529 - -0.0 394,529 - +0.4 394,546 - -1.0 394,554 + -0.4 394,573 + +0.2 394,574 - -0.4 394,660 + -0.3 394,661 - +0.1 394,759 - -0.8 394,853 + +0.1 394,853 + -1.6 394,853 + -0.9 394,853 + -0.6 394,854 - +0.9 394,854 - +2.6 394,854 - -0.5 394,916 + -0.2 394,916 + +1.6 394,924 + +0.8 394,924 + -0.4 394,924 + +0.0 394,925 - -1.1 394,925 - -1.3 394,925 - +0.2 394,925 - -0.4 394,925 - +0.6 394,925 - +1.5 394,925 - +0.7 394,926 + -2.3 394,935 + +0.3 394,967 + -0.0 394,968 - -0.2 394,968 - -0.9 395,029 + +0.2 395,029 + -0.3 395,030 - -0.5 395,076 - -0.9 395,085 + +0.4 395,085 + -0.1 395,096 + +0.7 395,096 + +1.0 395,096 + -1.7 395,096 + +1.4 395,096 + -0.4 395,103 + +0.2 395,103 + +1.6 395,194 + -0.2 395,195 - -0.7 395,208 + -0.3 395,209 - -1.2 395,209 - +0.5 395,335 + QEN71_RS44645 0.80 +0.9 395,335 + QEN71_RS44645 0.80 -1.1 395,336 - QEN71_RS44645 0.80 +1.1 395,377 + +0.2 396,208 + -2.2 396,208 + -0.5 396,208 + -0.2 396,255 + -1.4 396,256 - -0.4 396,313 + +0.6 396,313 + -0.2 396,313 + -0.6 396,314 - +0.4 396,315 + +0.3 396,315 + -0.3 396,315 + +0.3 396,316 - -0.4 396,316 - -1.0 396,316 - +0.2
Or see this region's nucleotide sequence